Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000278.1

Orthogroup ID

OG0006441

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1217

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000278.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgactggagatggtgtcaacgatgctcctgctttgaaaaaagcagacattggaattgccgtagctgatgctactgatgctgctagaggtgcttcagatattgttctgactgaacctggattaagtgtgataataagcgcagtacttacaagccgggccatatttcagaggatgaagaactatactatctacgccgtttcaattaccatacgtatagtgtttggctttatgctcatcgctttgatatggcagtttgactttgcacccttcatggtattgatcattgctatactaaatgatggaacgatcatgacaatatccaaggaccgagtgaaaccatctccaatgccagacagctggaaactgaaagaaatttttgctactggcattgttcttggaggttacatggccttgatgacagtagtgtttttttggttgatgacagatacagacttcttctcggagacgtttggtgtgcgatctttgaggaatagcgatagtgaaatgatggcagcgttatacttacaagtgagtattattagccaagcccttatctttgtcacaaggtcccgaggattttcctttgctgatcgccctggacttctcttgcttggagctttcatcattgctcaattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

212

Amino Acids

23.21

Weight (kDa)

5.4

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24520 AT2G24520 AT2G24520 AT2G24520
fragaria_vesca	FvH4_2g36880 FvH4_2g36880 FvH4_2g36880
malus_domestica	MD08G1130200.v1.1 MD15G1108400.v1.1
prunus_persica	Prupe.1G460700_v2.0.a1 Prupe.1G460700_v2.0.a1
pyrus_communis	pycom03g01500 pycom08g10940
rosa_chinensis	RchiOBHm_Chr6g0304901
rosa_laevigata	RLG00000010940
rosa_multiflora	Rmu_co8372769.1_g000001 Rmu_ssc0000278.1_g000001 Rmu_ssc0000278.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163360
rosa_rugosa	Rorug06G0336100 Rorug06G0336100
rosa_samantha	Rh6AG447400 Rh6BG454100 Rh6CG460900 Rh6DG447900
rosa_wichuraiana	Rw6G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	37, 201
AjnI	CCWGG	2 cut(s)	115, 595
AluBI	AGCT	3 cut(s)	65, 357, 617
AluI	AGCT	3 cut(s)	65, 357, 617
Alw26I	GTCTC	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	570
AoxI	GGCC	2 cut(s)	156, 408
ApeKI	GCWGC	2 cut(s)	80, 512
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	3 cut(s)	156, 325, 567
AsuC2I	CCSGG	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	570
AvaII	GGWCC	2 cut(s)	325, 567
BbvI	GCAGC	2 cut(s)	67, 524
BccI	CCATC	4 cut(s)	5, 293, 346, 502
BceAI	ACGGC	2 cut(s)	44, 179
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	2 cut(s)	117, 597
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	81, 513
BlsI	GCNGC	2 cut(s)	82, 514
BmcAI	AGTACT	1 cut(s)	144
Bme1390I	CCNGG	3 cut(s)	117, 155, 597
Bme18I	GGWCC	2 cut(s)	325, 567
BmeT110I	CYCGRG	1 cut(s)	570
BmgT120I	GGNCC	3 cut(s)	156, 325, 567
BmiI	GGNNCC	1 cut(s)	569
BmrFI	CCNGG	3 cut(s)	117, 155, 597
BmsI	GCATC	3 cut(s)	13, 58, 67
BpmI	CTGGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	321, 571, 595
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse1I	ACTGG	2 cut(s)	10, 388
Bse3DI	GCAATG	2 cut(s)	282, 624
BseBI	CCWGG	2 cut(s)	117, 597
BseDI	CCNNGG	3 cut(s)	321, 571, 595
BseGI	GGATG	1 cut(s)	177
BseMI	GCAATG	2 cut(s)	282, 624
BseNI	ACTGG	2 cut(s)	10, 388
BseXI	GCAGC	2 cut(s)	67, 524
BshFI	GGCC	2 cut(s)	158, 410
BsiHKCI	CYCGRG	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	158, 410
BsoBI	CYCGRG	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	279, 306, 479, 589
BspANI	GGCC	2 cut(s)	158, 410
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	282, 624
BsrI	ACTGG	2 cut(s)	10, 388
BssECI	CCNNGG	3 cut(s)	321, 571, 595
BssMI	GATC	4 cut(s)	279, 306, 479, 589
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	117, 597
Bst4CI	ACNGT	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	282, 309, 482, 592
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	4 cut(s)	279, 306, 479, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 89
BstNI	CCWGG	2 cut(s)	117, 597
BstSCI	CCNGG	3 cut(s)	115, 153, 595
BstSNI	TACGTA	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	67, 524
BstXI	CCANNNNNNTGG	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	158, 410
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	177
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	156, 325, 567
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	3 cut(s)	271, 310, 406
CviJI	RGCY	9 cut(s)	65, 153, 158, 225, 357, 410, 543, 548, 617
CviKI_1	RGCY	9 cut(s)	65, 153, 158, 225, 357, 410, 543, 548, 617
CviQI	GTAC	1 cut(s)	143
DpnI	GATC	4 cut(s)	281, 308, 481, 591
DpnII	GATC	4 cut(s)	279, 306, 479, 589
Eco105I	TACGTA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	325, 567
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	115, 595
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	3 cut(s)	274, 313, 409
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	3 cut(s)	270, 309, 405
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	81, 513
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	81, 513
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	81, 513
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	158, 410
HapII	CCGG	1 cut(s)	154
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	274, 313, 409
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	97, 108, 168, 463
Hpy188III	TCNNGA	2 cut(s)	310, 570
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	211, 467
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 89
HpySE526I	ACGT	2 cut(s)	211, 467
Hsp92II	CATG	3 cut(s)	274, 313, 409
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	279, 306, 479, 589
LmnI	GCTCC	2 cut(s)	31, 614
LpnPI	CCDG	9 cut(s)	42, 102, 129, 167, 343, 363, 369, 582, 609
Lsp1109I	GCAGC	2 cut(s)	67, 524
LweI	GCATC	3 cut(s)	13, 58, 67
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	211, 467
MaeIII	GTNAC	2 cut(s)	401, 559
MalI	GATC	4 cut(s)	281, 308, 481, 591
MboI	GATC	4 cut(s)	279, 306, 479, 589
MboII	GAAGA	2 cut(s)	187, 448
MfeI	CAATTG	1 cut(s)	632
MluCI	AATT	4 cut(s)	54, 201, 372, 632
MnlI	CCTC	5 cut(s)	80, 162, 392, 480, 566
MseI	TTAA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	357
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	3 cut(s)	117, 155, 597
MunI	CAATTG	1 cut(s)	632
MvaI	CCWGG	2 cut(s)	117, 597
MwoI	GCNNNNNNNGC	2 cut(s)	77, 89
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	279, 306, 479, 589
NlaIII	CATG	3 cut(s)	274, 313, 409
NlaIV	GGNNCC	1 cut(s)	569
NmuCI	GTSAC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	82, 514
Ppu21I	YACGTR	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	115, 595
PspGI	CCWGG	2 cut(s)	115, 595
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	3 cut(s)	156, 325, 567
PspPPI	RGGWCCY	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	357
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	2 cut(s)	81, 513
Sau3AI	GATC	4 cut(s)	279, 306, 479, 589
Sau96I	GGNCC	3 cut(s)	156, 325, 567
ScaI	AGTACT	1 cut(s)	144
ScrFI	CCNGG	3 cut(s)	117, 155, 597
SetI	ASST	9 cut(s)	67, 91, 118, 214, 359, 403, 470, 569, 619
SfaNI	GCATC	3 cut(s)	13, 58, 67
SinI	GGWCC	2 cut(s)	325, 567
SnaBI	TACGTA	1 cut(s)	212
Sse9I	AATT	4 cut(s)	54, 201, 372, 632
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	115, 153, 595
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	2 cut(s)	214, 470
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	4 cut(s)	54, 201, 372, 632
TatI	WGTACW	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	2 cut(s)	80, 512
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	188, 259, 610
VpaK11BI	GGWCC	2 cut(s)	325, 567
XapI	RAATTY	1 cut(s)	372
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.