FvH4_2g37040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015342
Physical Location & Seq
Reverse (-)
27040888 .. 27042807
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37040.t1

Sequence Viewer

Length: 1245 bp
ATGAGGCAGAGTCGATCCTCAAAGCAAGAGACTGATCAGTTGATGGAAATAGATGACCTTAGTAAGCTCAAAGAGGAACCTCATCATCTATCTGGTGCTTATATCCGTAGCCTAGTGAAACAACTCACCTCTTCAAGAACCAAAGACACCATGAACTCCAAAGACCTCCTTGACTGTGGCACCAAATTCAGGGAAGGATTTAGTGAAACCCAAATTACACAGCAACCCCAACAACCTCAACAGCACAAAAAACAAGTAAGGAGGAGACTCCACACCAGTAGACCTTACCAAGAAAGGCTCTTAAACATGGCTGAGGCTAGGAAGGAGATTGTCACTGCTCTGAAGTTTCATAGAGCGGCTATGAAACAAGCCAGTGAACAACAGCAACAACATCAGGAACAAGAACAACAGCCGCAATCGCAAGAAATGCTGCCTCAACCCCACCCCTGTTCGGAGCCAGAGGGAAGGATTAAATCTAGGAGAAATCCTAGAATTTACCCATCAAATTCAACCAATTATCTCGAAACTCTGCCTTATTCATCCAATTTTTCTCATCAATATCCCTCTGTTCCTAATCAATTTTTCTGGAGTTCTGCTTCCAGAATTCCTCCTCCACCTCTTTATGAAAACTTCGATTTCACAGCTCTTCCAAGCCAGACCCTCGGCCTCAATCTCAATTTTCAAGATTTCAACAATATAAGCACTACCCTTTACCACAACAGCAACAGCCCCCCAGTTTACTCAACTTCAGGGTCAGTCTCATTCTCAGCCTCAGCCTCATCTCCATCATCATCTTCTTCCCCAAGTCTTTCTATTGCCACTGATCATGAACTTCCTGGTTCATCAGCCGGAATATCACACATGGAAATGGAGGCCCCTGCAGTAGCTGATGCTGAAGACTCTGGTATCACCACTAGCGGTGGAGATGGATTGCATGCAGCAATGGATGATGAGGAGATGGCGGAGATCAGATCAATTGGAGAGCAGCATCAGATGGAATGGAATGACACCATGAATTTGGTAACTTCAGCATGGTGGTTCAAGTTTTTGAAGGCTGAAGATGATGATGGATACAACCTTCCATTTGATGAAGTCCTGGAGTTTCCAGCCTGGTCGAGTGCAAATGAGGGCAGCTTTCAACAACATTTGAATGATTACTACTCAGCAGACTATTTTCAAGATCCTGCCTTGCCTTGCATGGACATTGGAGAATTTGAAGGTTTCGATGGTGAATGGCTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

46.84

Weight (kDa)

4.93

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21280 AT5G21280
fragaria_vesca FvH4_2g37040
malus_domestica MD08G1046900.v1.1 MD15G1047100.v1.1
prunus_persica Prupe.1G401300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304741
rosa_laevigata RLG00000010954
rosa_multiflora Rmu_ssc0000139.1_g000010
rosa_roxburghii Rroxscaffold_7G00163540
rosa_rugosa Rorug06G0334100
rosa_samantha Rh6AG446000 Rh6BG455600 Rh6CG459400 Rh6DG446300
rosa_wichuraiana Rw6G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 280
AciI CCGC 4 cut(s) 356, 413, 918, 962
AclWI GGATC 2 cut(s) 9, 1175
AcsI RAATTY 6 cut(s) 185, 492, 505, 603, 1015, 1211
AcuI CTGAAG 5 cut(s) 362, 732, 915, 1011, 1077
AfiI CCNNNNNNNGG 2 cut(s) 189, 451
AjnI CCWGG 3 cut(s) 835, 1095, 1109
AluBI AGCT 5 cut(s) 67, 644, 887, 1134, 1241
AluI AGCT 5 cut(s) 67, 644, 887, 1134, 1241
Alw26I GTCTC 3 cut(s) 23, 259, 763
AlwI GGATC 2 cut(s) 9, 1175
AlwNI CAGNNNCTG 1 cut(s) 887
AoxI GGCC 2 cut(s) 664, 873
ApeKI GCWGC 4 cut(s) 430, 938, 985, 1131
ApoI RAATTY 6 cut(s) 185, 492, 505, 603, 1015, 1211
AspS9I GGNCC 1 cut(s) 874
AsuHPI GGTGA 3 cut(s) 118, 901, 1241
AsuNHI GCTAGC 1 cut(s) 1237
BaeI ACNNNNGTAYC 2 cut(s) 889, 922
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 903
BbvCI CCTCAGC 2 cut(s) 312, 772
BbvI GCAGC 4 cut(s) 417, 950, 997, 1143
BccI CCATC 8 cut(s) 37, 508, 793, 920, 952, 988, 1061, 1220
BciT130I CCWGG 3 cut(s) 837, 1097, 1111
BciVI GTATCC 1 cut(s) 1064
BclI TGATCA 2 cut(s) 34, 823
BcoDI GTCTC 3 cut(s) 23, 259, 763
BfaI CTAG 6 cut(s) 113, 318, 477, 489, 915, 1238
BfmI CTRYAG 1 cut(s) 879
BfuI GTATCC 1 cut(s) 1064
BisI GCNGC 6 cut(s) 357, 413, 431, 939, 986, 1132
BlsI GCNGC 6 cut(s) 358, 414, 432, 940, 987, 1133
Bme1390I CCNGG 3 cut(s) 837, 1097, 1111
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 4 cut(s) 78, 181, 456, 876
BmrFI CCNGG 3 cut(s) 837, 1097, 1111
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 2 cut(s) 880, 997
BmtI GCTAGC 1 cut(s) 1241
BmuI ACTGGG 1 cut(s) 728
BpiI GAAGAC 1 cut(s) 903
BpmI CTGGAG 2 cut(s) 607, 1118
Bpu10I CCTNAGC 2 cut(s) 312, 772
BsaJI CCNNGG 1 cut(s) 661
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 451
Bse1I ACTGG 3 cut(s) 276, 372, 734
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 3 cut(s) 837, 1097, 1111
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 2 cut(s) 539, 952
BseLI CCNNNNNNNGG 2 cut(s) 189, 451
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 4 cut(s) 303, 780, 786, 1176
BseNI ACTGG 3 cut(s) 276, 372, 734
BseRI GAGGAG 3 cut(s) 277, 600, 968
BseXI GCAGC 4 cut(s) 417, 950, 997, 1143
BshFI GGCC 2 cut(s) 666, 875
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 849
BslI CCNNNNNNNGG 2 cut(s) 189, 451
BsmAI GTCTC 3 cut(s) 23, 259, 763
BsnI GGCC 2 cut(s) 666, 875
Bsp143I GATC 6 cut(s) 14, 34, 823, 966, 971, 1180
BspACI CCGC 4 cut(s) 356, 413, 918, 962
BspANI GGCC 2 cut(s) 666, 875
BspCNI CTCAG 4 cut(s) 304, 779, 785, 1175
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 4 cut(s) 78, 181, 456, 876
BspMAI CTGCAG 1 cut(s) 883
BspOI GCTAGC 1 cut(s) 1241
BspPI GGATC 2 cut(s) 9, 1175
BspQI GCTCTTC 1 cut(s) 651
BspT107I GGYRCC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 3 cut(s) 276, 372, 734
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 6 cut(s) 14, 34, 823, 966, 971, 1180
Bst2UI CCWGG 3 cut(s) 837, 1097, 1111
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 136, 651
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 936, 1239
BstDEI CTNAG 5 cut(s) 59, 312, 766, 772, 1162
BstF5I GGATG 2 cut(s) 539, 952
BstKTI GATC 6 cut(s) 17, 37, 826, 969, 974, 1183
BstMAI GTCTC 3 cut(s) 23, 259, 763
BstMBI GATC 6 cut(s) 14, 34, 823, 966, 971, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 418, 427
BstNI CCWGG 3 cut(s) 837, 1097, 1111
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 3 cut(s) 835, 1095, 1109
BstSFI CTRYAG 1 cut(s) 879
BstV1I GCAGC 4 cut(s) 417, 950, 997, 1143
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 1 cut(s) 1180
BstXI CCANNNNNNTGG 1 cut(s) 1018
BstYI RGATCY 1 cut(s) 1180
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 2 cut(s) 666, 875
BtsCI GGATG 2 cut(s) 539, 952
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 333, 379, 819
Cac8I GCNNGC 2 cut(s) 936, 1239
CaiI CAGNNNCTG 1 cut(s) 887
CciI TCATGA 1 cut(s) 826
Cfr13I GGNCC 1 cut(s) 874
CviAII CATG 8 cut(s) 151, 307, 827, 862, 935, 1012, 1032, 1198
DdeI CTNAG 5 cut(s) 59, 312, 766, 772, 1162
DpnI GATC 6 cut(s) 16, 36, 825, 968, 973, 1182
DpnII GATC 6 cut(s) 14, 34, 823, 966, 971, 1180
Eam1104I CTCTTC 2 cut(s) 136, 651
EarI CTCTTC 2 cut(s) 136, 651
EciI GGCGGA 1 cut(s) 977
Eco57I CTGAAG 5 cut(s) 362, 732, 915, 1011, 1077
EcoO109I RGGNCCY 1 cut(s) 874
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 3 cut(s) 835, 1095, 1109
FaeI CATG 8 cut(s) 154, 310, 830, 865, 938, 1015, 1035, 1201
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 8 cut(s) 150, 306, 826, 861, 934, 1011, 1031, 1197
FbaI TGATCA 2 cut(s) 34, 823
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 6 cut(s) 357, 413, 431, 939, 986, 1132
FokI GGATG 2 cut(s) 526, 959
Fsp4HI GCNGC 6 cut(s) 357, 413, 431, 939, 986, 1132
FspBI CTAG 6 cut(s) 113, 318, 477, 489, 915, 1238
GluI GCNGC 6 cut(s) 357, 413, 431, 939, 986, 1132
GsuI CTGGAG 2 cut(s) 607, 1118
HaeIII GGCC 2 cut(s) 666, 875
HapII CCGG 1 cut(s) 849
Hin1II CATG 8 cut(s) 154, 310, 830, 865, 938, 1015, 1035, 1201
HinfI GANTC 3 cut(s) 10, 267, 899
HpaII CCGG 1 cut(s) 849
HphI GGTGA 3 cut(s) 118, 901, 1241
Hpy166II GTNNAC 3 cut(s) 281, 377, 739
Hpy188I TCNGA 4 cut(s) 342, 454, 971, 993
Hpy188III TCNNGA 8 cut(s) 135, 395, 521, 586, 600, 683, 827, 1178
Hpy8I GTNNAC 3 cut(s) 281, 377, 739
HpyAV CCTTC 6 cut(s) 188, 316, 459, 1045, 1088, 1211
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 5 cut(s) 881, 934, 938, 1121, 1197
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 427
HpyF3I CTNAG 5 cut(s) 59, 312, 766, 772, 1162
Hsp92II CATG 8 cut(s) 154, 310, 830, 865, 938, 1015, 1035, 1201
Ksp22I TGATCA 2 cut(s) 34, 823
Kzo9I GATC 6 cut(s) 14, 34, 823, 966, 971, 1180
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 1 cut(s) 454
Lsp1109I GCAGC 4 cut(s) 417, 950, 997, 1143
LweI GCATC 2 cut(s) 880, 997
MaeI CTAG 6 cut(s) 113, 318, 477, 489, 915, 1238
MaeIII GTNAC 2 cut(s) 331, 1021
MalI GATC 6 cut(s) 16, 36, 825, 968, 973, 1182
MbiI CCGCTC 1 cut(s) 356
MboI GATC 6 cut(s) 14, 34, 823, 966, 971, 1180
MboII GAAGA 6 cut(s) 123, 638, 786, 789, 908, 1070
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 1 cut(s) 1180
MlyI GAGTC 3 cut(s) 19, 261, 893
MseI TTAA 2 cut(s) 302, 471
MslI CAYNNNNRTG 2 cut(s) 866, 1149
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 3 cut(s) 837, 1097, 1111
MunI CAATTG 1 cut(s) 975
MvaI CCWGG 3 cut(s) 837, 1097, 1111
MwoI GCNNNNNNNGC 2 cut(s) 418, 427
NdeII GATC 6 cut(s) 14, 34, 823, 966, 971, 1180
NheI GCTAGC 1 cut(s) 1237
NlaIII CATG 8 cut(s) 154, 310, 830, 865, 938, 1015, 1035, 1201
NlaIV GGNNCC 4 cut(s) 78, 181, 456, 876
NmeAIII GCCGAG 1 cut(s) 642
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 938
PaeI GCATGC 1 cut(s) 938
PagI TCATGA 1 cut(s) 826
PciSI GCTCTTC 1 cut(s) 651
PfoI TCCNGGA 1 cut(s) 1095
PkrI GCNGC 6 cut(s) 358, 414, 432, 940, 987, 1133
PleI GAGTC 3 cut(s) 18, 261, 893
PpsI GAGTC 3 cut(s) 18, 261, 893
Psp6I CCWGG 3 cut(s) 835, 1095, 1109
PspGI CCWGG 3 cut(s) 835, 1095, 1109
PspN4I GGNNCC 4 cut(s) 78, 181, 456, 876
PspPI GGNCC 1 cut(s) 874
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 1 cut(s) 1180
RseI CAYNNNNRTG 2 cut(s) 866, 1149
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 2 cut(s) 302, 471
SatI GCNGC 6 cut(s) 357, 413, 431, 939, 986, 1132
Sau3AI GATC 6 cut(s) 14, 34, 823, 966, 971, 1180
Sau96I GGNCC 1 cut(s) 874
SchI GAGTC 3 cut(s) 19, 261, 893
ScrFI CCNGG 3 cut(s) 837, 1097, 1111
SfaNI GCATC 2 cut(s) 880, 997
SfcI CTRYAG 1 cut(s) 879
SmiMI CAYNNNNRTG 2 cut(s) 866, 1149
SphI GCATGC 1 cut(s) 938
SsiI CCGC 4 cut(s) 356, 413, 918, 962
SspMI CTAG 6 cut(s) 113, 318, 477, 489, 915, 1238
StyD4I CCNGG 3 cut(s) 835, 1095, 1109
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 5 cut(s) 13, 522, 633, 1115, 1224
TauI GCSGC 2 cut(s) 359, 415
Tru1I TTAA 2 cut(s) 302, 471
Tru9I TTAA 2 cut(s) 302, 471
TscAI CASTG 3 cut(s) 340, 379, 826
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 430, 938, 985, 1131
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 9 cut(s) 167, 338, 377, 528, 639, 831, 843, 1028, 1104
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 3 cut(s) 340, 379, 826
XapI RAATTY 6 cut(s) 185, 492, 505, 603, 1015, 1211
XceI RCATGY 1 cut(s) 938
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 6 cut(s) 113, 318, 477, 489, 915, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.