Rmu_ssc0000139.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000139.1
OG0015342
Physical Location & Seq
Reverse (-)
74084 .. 75283
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000139.1_g000010.1.cds

Sequence Viewer

Length: 1200 bp
atgaggcagagtcgttcctcaaagcaagagactgatcaattaatggaaatagatgaccttagtaagctcaaagaggaacctcatcatctatctggtgcttatatccgtagcctagtgaaacaactcacctcttcaagaaccaaagacaccatgaaccccaaagacctcctggactgtggcaccaaattcagggaaggatttagtgaaacccaaaatgcacagcaatcccaacaacctcaacagcacaaaaaacaagtaaggaggagactccacaccagtagaccttaccaagaaaggctcttaaacatggctgaggctaggagggagattgtcactgctctaaagtttcatagagcggctatgaaacaagccagtgaacaacagcaacaacatcaagaacaagaacaacagccacaatcgcaacaattgctgcctcaaccccacccatgctctgagccagaaggaaggattaaatccaggagaaatcctagaatttacccatcaaattcaaccaattatcttgaaaccctgccttactcatccaatttttctcatcaatatccctctgttcctaatcaattttcctggagttctacttccagaattcctcctccgcctgtttatgaaaacttcgatttcacagctcttccaagccagaccctcggcctgaacctcaactttcaagatttcaacaatataaacactaccctttaccacaacagcaacagtcccccgttttactcaacctcaggctcagtctcattctcagcctcggcctcatctccatcatcatcttcttcccctagtctttctattgccactgatcatgaacttcctggttcatcagccgcaatatcacacatggaaatggaggcccctgctgtagctgatgttgacgactctggcatcgctactagcggtggagatggcttgcatgcagcaatggatgatgaggagatggcagagatcagatcaatcggagagcagcatcagatggaatggaatgacaccatgaatttggtagcttcagcatggtggttcaagttcttaaaggctgaagatgatgatggatgccaccttccatttgatgaagtcctggagtttccagcctggctgaatgcaaatgagggcagttttcaacaacatttgaatgattactactcagcagattattttcaagatcctgccttgccttggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

45.22

Weight (kDa)

5.24

Isoelectric Point (pI)

66.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21280 AT5G21280
fragaria_vesca FvH4_2g37040
malus_domestica MD08G1046900.v1.1 MD15G1047100.v1.1
prunus_persica Prupe.1G401300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304741
rosa_laevigata RLG00000010954
rosa_multiflora Rmu_ssc0000139.1_g000010
rosa_roxburghii Rroxscaffold_7G00163540
rosa_rugosa Rorug06G0334100
rosa_samantha Rh6AG446000 Rh6BG455600 Rh6CG459400 Rh6DG446300
rosa_wichuraiana Rw6G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 280
AciI CCGC 4 cut(s) 356, 614, 849, 918
AclWI GGATC 1 cut(s) 1175
AcsI RAATTY 5 cut(s) 185, 492, 505, 603, 1015
AcuI CTGAAG 2 cut(s) 1011, 1077
AfiI CCNNNNNNNGG 2 cut(s) 189, 1194
AgsI TTSAA 9 cut(s) 135, 510, 524, 683, 691, 1042, 1139, 1150, 1178
AjnI CCWGG 6 cut(s) 168, 476, 584, 835, 1095, 1109
AluBI AGCT 4 cut(s) 67, 644, 887, 1025
AluI AGCT 4 cut(s) 67, 644, 887, 1025
Alw26I GTCTC 3 cut(s) 23, 259, 763
AlwI GGATC 1 cut(s) 1175
AoxI GGCC 3 cut(s) 664, 774, 873
ApeKI GCWGC 3 cut(s) 430, 938, 985
ApoI RAATTY 5 cut(s) 185, 492, 505, 603, 1015
AseI ATTAAT 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 874
AsuHPI GGTGA 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 748
BanI GGYRCC 1 cut(s) 179
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 417, 950, 997
BccI CCATC 6 cut(s) 508, 793, 920, 952, 988, 1061
BciT130I CCWGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
BclI TGATCA 2 cut(s) 34, 823
BcoDI GTCTC 3 cut(s) 23, 259, 763
BfaI CTAG 5 cut(s) 113, 318, 489, 804, 915
BfmI CTRYAG 1 cut(s) 882
BisI GCNGC 5 cut(s) 357, 431, 849, 939, 986
BlsI GCNGC 5 cut(s) 358, 432, 850, 940, 987
Bme1390I CCNGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 3 cut(s) 78, 181, 876
BmrFI CCNGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
BmsI GCATC 3 cut(s) 915, 997, 1061
BpmI CTGGAG 2 cut(s) 607, 1118
Bpu10I CCTNAGC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 661, 771, 1193
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 1194
Bse1I ACTGG 2 cut(s) 276, 372
Bse21I CCTNAGG 1 cut(s) 748
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
BseDI CCNNGG 3 cut(s) 661, 771, 1193
BseGI GGATG 3 cut(s) 539, 952, 1076
BseLI CCNNNNNNNGG 2 cut(s) 189, 1194
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 6 cut(s) 303, 444, 762, 768, 780, 1176
BseNI ACTGG 2 cut(s) 276, 372
BseRI GAGGAG 3 cut(s) 277, 600, 968
BseXI GCAGC 3 cut(s) 417, 950, 997
BshFI GGCC 3 cut(s) 666, 776, 875
BshNI GGYRCC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 2 cut(s) 189, 1194
BsmAI GTCTC 3 cut(s) 23, 259, 763
BsmFI GGGAC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 3 cut(s) 666, 776, 875
Bsp143I GATC 5 cut(s) 34, 823, 966, 971, 1180
BspACI CCGC 4 cut(s) 356, 614, 849, 918
BspANI GGCC 3 cut(s) 666, 776, 875
BspCNI CTCAG 6 cut(s) 304, 445, 761, 767, 779, 1175
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 3 cut(s) 78, 181, 876
BspPI GGATC 1 cut(s) 1175
BspQI GCTCTTC 1 cut(s) 651
BspT107I GGYRCC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 2 cut(s) 276, 372
BssECI CCNNGG 3 cut(s) 661, 771, 1193
BssMI GATC 5 cut(s) 34, 823, 966, 971, 1180
BssT1I CCWWGG 1 cut(s) 1193
Bst2UI CCWGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
Bst4CI ACNGT 2 cut(s) 176, 728
Bst6I CTCTTC 2 cut(s) 136, 651
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 932, 936
BstDEI CTNAG 7 cut(s) 59, 312, 453, 748, 754, 766, 1162
BstF5I GGATG 3 cut(s) 539, 952, 1076
BstKTI GATC 5 cut(s) 37, 826, 969, 974, 1183
BstMAI GTCTC 3 cut(s) 23, 259, 763
BstMBI GATC 5 cut(s) 34, 823, 966, 971, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 418, 427
BstNI CCWGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 6 cut(s) 168, 476, 584, 835, 1095, 1109
BstSFI CTRYAG 1 cut(s) 882
BstV1I GCAGC 3 cut(s) 417, 950, 997
BstX2I RGATCY 1 cut(s) 1180
BstXI CCANNNNNNTGG 1 cut(s) 1018
BstYI RGATCY 1 cut(s) 1180
Bsu36I CCTNAGG 1 cut(s) 748
BsuRI GGCC 3 cut(s) 666, 776, 875
BtgZI GCGATG 1 cut(s) 892
BtsCI GGATG 3 cut(s) 539, 952, 1076
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 333, 379, 819
Cac8I GCNNGC 2 cut(s) 932, 936
CciI TCATGA 1 cut(s) 826
Cfr13I GGNCC 1 cut(s) 874
CviAII CATG 8 cut(s) 151, 307, 447, 827, 862, 935, 1012, 1032
DdeI CTNAG 7 cut(s) 59, 312, 453, 748, 754, 766, 1162
DpnI GATC 5 cut(s) 36, 825, 968, 973, 1182
DpnII GATC 5 cut(s) 34, 823, 966, 971, 1180
Eam1104I CTCTTC 2 cut(s) 136, 651
EarI CTCTTC 2 cut(s) 136, 651
EciI GGCGGA 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 1193
Eco57I CTGAAG 2 cut(s) 1011, 1077
Eco81I CCTNAGG 1 cut(s) 748
EcoO109I RGGNCCY 1 cut(s) 874
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 6 cut(s) 168, 476, 584, 835, 1095, 1109
EcoT14I CCWWGG 1 cut(s) 1193
ErhI CCWWGG 1 cut(s) 1193
FaeI CATG 8 cut(s) 154, 310, 450, 830, 865, 938, 1015, 1035
FaqI GGGAC 1 cut(s) 714
FatI CATG 8 cut(s) 150, 306, 446, 826, 861, 934, 1011, 1031
FbaI TGATCA 2 cut(s) 34, 823
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 5 cut(s) 357, 431, 849, 939, 986
FokI GGATG 3 cut(s) 526, 959, 1083
Fsp4HI GCNGC 5 cut(s) 357, 431, 849, 939, 986
FspBI CTAG 5 cut(s) 113, 318, 489, 804, 915
GluI GCNGC 5 cut(s) 357, 431, 849, 939, 986
GsuI CTGGAG 2 cut(s) 607, 1118
HaeIII GGCC 3 cut(s) 666, 776, 875
Hin1II CATG 8 cut(s) 154, 310, 450, 830, 865, 938, 1015, 1035
HincII GTYRAC 1 cut(s) 895
HindII GTYRAC 1 cut(s) 895
HinfI GANTC 3 cut(s) 10, 267, 899
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 281, 377, 895
Hpy188I TCNGA 4 cut(s) 454, 971, 980, 993
Hpy188III TCNNGA 7 cut(s) 135, 395, 521, 600, 683, 827, 1178
Hpy8I GTNNAC 3 cut(s) 281, 377, 895
HpyAV CCTTC 4 cut(s) 188, 455, 459, 1088
HpyCH4III ACNGT 2 cut(s) 176, 728
HpyCH4V TGCA 4 cut(s) 218, 934, 938, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 427
HpyF3I CTNAG 7 cut(s) 59, 312, 453, 748, 754, 766, 1162
Hsp92II CATG 8 cut(s) 154, 310, 450, 830, 865, 938, 1015, 1035
Ksp22I TGATCA 2 cut(s) 34, 823
Kzo9I GATC 5 cut(s) 34, 823, 966, 971, 1180
LguI GCTCTTC 1 cut(s) 651
Lsp1109I GCAGC 3 cut(s) 417, 950, 997
LweI GCATC 3 cut(s) 915, 997, 1061
MaeI CTAG 5 cut(s) 113, 318, 489, 804, 915
MaeIII GTNAC 1 cut(s) 331
MalI GATC 5 cut(s) 36, 825, 968, 973, 1182
MbiI CCGCTC 1 cut(s) 356
MboI GATC 5 cut(s) 34, 823, 966, 971, 1180
MboII GAAGA 5 cut(s) 123, 638, 786, 789, 1070
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 1 cut(s) 1180
MlyI GAGTC 3 cut(s) 19, 261, 893
MseI TTAA 4 cut(s) 41, 302, 471, 1049
MslI CAYNNNNRTG 2 cut(s) 866, 1149
MspR9I CCNGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
MunI CAATTG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
MwoI GCNNNNNNNGC 2 cut(s) 418, 427
NdeII GATC 5 cut(s) 34, 823, 966, 971, 1180
NlaIII CATG 8 cut(s) 154, 310, 450, 830, 865, 938, 1015, 1035
NlaIV GGNNCC 3 cut(s) 78, 181, 876
NmeAIII GCCGAG 2 cut(s) 642, 752
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 938
PaeI GCATGC 1 cut(s) 938
PagI TCATGA 1 cut(s) 826
PciSI GCTCTTC 1 cut(s) 651
PctI GAATGC 1 cut(s) 1123
PfoI TCCNGGA 4 cut(s) 168, 476, 584, 1095
PkrI GCNGC 5 cut(s) 358, 432, 850, 940, 987
PleI GAGTC 3 cut(s) 18, 261, 893
PpsI GAGTC 3 cut(s) 18, 261, 893
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 6 cut(s) 168, 476, 584, 835, 1095, 1109
PspGI CCWGG 6 cut(s) 168, 476, 584, 835, 1095, 1109
PspN4I GGNNCC 3 cut(s) 78, 181, 876
PspPI GGNCC 1 cut(s) 874
PsuI RGATCY 1 cut(s) 1180
RseI CAYNNNNRTG 2 cut(s) 866, 1149
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 4 cut(s) 41, 302, 471, 1049
SatI GCNGC 5 cut(s) 357, 431, 849, 939, 986
Sau3AI GATC 5 cut(s) 34, 823, 966, 971, 1180
Sau96I GGNCC 1 cut(s) 874
SchI GAGTC 3 cut(s) 19, 261, 893
ScrFI CCNGG 6 cut(s) 170, 478, 586, 837, 1097, 1111
SfaNI GCATC 3 cut(s) 915, 997, 1061
SfcI CTRYAG 1 cut(s) 882
SmiMI CAYNNNNRTG 2 cut(s) 866, 1149
SphI GCATGC 1 cut(s) 938
SsiI CCGC 4 cut(s) 356, 614, 849, 918
SspMI CTAG 5 cut(s) 113, 318, 489, 804, 915
StyD4I CCNGG 6 cut(s) 168, 476, 584, 835, 1095, 1109
StyI CCWWGG 1 cut(s) 1193
TaaI ACNGT 2 cut(s) 176, 728
TaqI TCGA 1 cut(s) 633
TauI GCSGC 2 cut(s) 359, 851
Tru1I TTAA 4 cut(s) 41, 302, 471, 1049
Tru9I TTAA 4 cut(s) 41, 302, 471, 1049
TscAI CASTG 3 cut(s) 340, 379, 826
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 430, 938, 985
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 8 cut(s) 167, 338, 377, 639, 831, 843, 1028, 1104
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 3 cut(s) 340, 379, 826
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 5 cut(s) 185, 492, 505, 603, 1015
XceI RCATGY 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 5 cut(s) 113, 318, 489, 804, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.