RLG00000010954

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015342
Physical Location & Seq
Reverse (-)
5648039 .. 5649982
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010954

Sequence Viewer

Length: 1245 bp
ATGAGGCAGAGTCGTTCCTCAAAGCAAGAGACTGATCAATTAATGGAAATAGATGACCTTAGTAAGCTCAAAGAGGAACCTCATCATCTATCTGGTGCTTATATCCGTAGCCTAGTGAAACAACTCACCTCTTCAAGAACCAAAGACACCATGAACCCCAAAGACCTCCTGGACTGTGGCACCAAATTCAGGGAAGGATTTATTGAAACCCAAAATGCACAGCAATCCCAACAACCTCAACAGCACAAAAAACAAGTAAGGAGGAGACTCCACACCAGTAGACCTTACCAAGAAAGGCTCTTAAACATGGCTGAGGCTAGGAGGGAGATTGTCACTGCTCTAAAGTTTCATAGAGCGGCTATGAAACAAGCCAGTGAACGACAGCAACAACATCAAGAACAAGAACAACAGCCACAATCGCAACAATTGCTGCCTCAACCCCACCCATGCTCTGAGCCAGAAGGAAGGATTAAATCTAGGAGAAATCCTAGAATTTACCCATCAAATTCAACCAATTATCTTGAAACCCTGCCTTACTCATCCAATTTTTCTCATCAATATCCCTCTGTTCCTAATCAATTTTCCTGGAGTTCTACTTCCAGAATTCCTCCTCCACCTGTTTATGAAAACTTAGATTTCACAGCTCTTCCAAGCCAGACCCTCGGCCTGAACCTCAACTTTCAAGATTTCAACAATATAAACACTACCCTTTACCACAACAGCAACAGTCCCCCGTTTTACTCAACCTCAGGCTCAGTCTCATTCTCAGCCTCGGCCTCATCTCCATCATCATCTTCTTCCCCTAGTCTTCCTATTGCCACTGATCATGAACTTCCTGGTTCGTCAGCCGCAATATCACACATGGAAATGGAGGCCCCTGCTGTAGCTGATGTTGACGACTCTGGCATCGCTACTAGCGGTGGAGATGGCTTGCATGCAGCAATGGATGATGAGGAGATGGCGGAGATCAGATCAATCGGAGAGCAGCATCAGATGGAATGGAATGACACCATGAATTTGGTAACTTCAGCATGGTGGTTCAAGTTCTTAAAGGCTGAAGGTGATGATGGATACCACCATCCATTTGATGAAGTCCTGGAGTTTCCAGCCTGGCTGAATGCAAATGAGGGCAGTTTTCAACAACATTTGAATGATTACTACTCAACAGATTATTTTCAAGATCCTGCCTTGCCTTGCATGGACATTGGAGAATTTGAAGGTTTTGATGGTGAATGGCTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

46.95

Weight (kDa)

5.14

Isoelectric Point (pI)

64.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21280 AT5G21280
fragaria_vesca FvH4_2g37040
malus_domestica MD08G1046900.v1.1 MD15G1047100.v1.1
prunus_persica Prupe.1G401300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304741
rosa_laevigata RLG00000010954
rosa_multiflora Rmu_ssc0000139.1_g000010
rosa_roxburghii Rroxscaffold_7G00163540
rosa_rugosa Rorug06G0334100
rosa_samantha Rh6AG446000 Rh6BG455600 Rh6CG459400 Rh6DG446300
rosa_wichuraiana Rw6G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 280
AciI CCGC 4 cut(s) 356, 849, 918, 962
AclWI GGATC 1 cut(s) 1175
AcsI RAATTY 6 cut(s) 185, 492, 505, 603, 1015, 1211
AcuI CTGAAG 2 cut(s) 1011, 1077
AfiI CCNNNNNNNGG 1 cut(s) 189
AjnI CCWGG 5 cut(s) 168, 584, 835, 1095, 1109
AluBI AGCT 4 cut(s) 67, 644, 887, 1241
AluI AGCT 4 cut(s) 67, 644, 887, 1241
Alw26I GTCTC 3 cut(s) 23, 259, 763
AlwI GGATC 1 cut(s) 1175
AoxI GGCC 3 cut(s) 664, 774, 873
ApeKI GCWGC 3 cut(s) 430, 938, 985
ApoI RAATTY 6 cut(s) 185, 492, 505, 603, 1015, 1211
AseI ATTAAT 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 874
AsuHPI GGTGA 3 cut(s) 118, 1073, 1241
AsuNHI GCTAGC 1 cut(s) 1237
AxyI CCTNAGG 1 cut(s) 748
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 800
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 417, 950, 997
BccI CCATC 8 cut(s) 508, 793, 920, 952, 988, 1061, 1086, 1220
BciT130I CCWGG 5 cut(s) 170, 586, 837, 1097, 1111
BciVI GTATCC 1 cut(s) 1064
BclI TGATCA 2 cut(s) 34, 823
BcoDI GTCTC 3 cut(s) 23, 259, 763
BfaI CTAG 7 cut(s) 113, 318, 477, 489, 804, 915, 1238
BfmI CTRYAG 1 cut(s) 882
BfuI GTATCC 1 cut(s) 1064
BisI GCNGC 5 cut(s) 357, 431, 849, 939, 986
BlsI GCNGC 5 cut(s) 358, 432, 850, 940, 987
Bme1390I CCNGG 5 cut(s) 170, 586, 837, 1097, 1111
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 3 cut(s) 78, 181, 876
BmrFI CCNGG 5 cut(s) 170, 586, 837, 1097, 1111
BmsI GCATC 2 cut(s) 915, 997
BmtI GCTAGC 1 cut(s) 1241
BpiI GAAGAC 1 cut(s) 800
BpmI CTGGAG 2 cut(s) 607, 1118
Bpu10I CCTNAGC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 661, 771
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 276, 372
Bse21I CCTNAGG 1 cut(s) 748
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 5 cut(s) 170, 586, 837, 1097, 1111
BseDI CCNNGG 2 cut(s) 661, 771
BseGI GGATG 3 cut(s) 539, 952, 1078
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 5 cut(s) 303, 444, 762, 768, 780
BseNI ACTGG 2 cut(s) 276, 372
BseRI GAGGAG 3 cut(s) 277, 600, 968
BseXI GCAGC 3 cut(s) 417, 950, 997
BshFI GGCC 3 cut(s) 666, 776, 875
BshNI GGYRCC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 3 cut(s) 23, 259, 763
BsmFI GGGAC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 3 cut(s) 666, 776, 875
Bsp143I GATC 5 cut(s) 34, 823, 966, 971, 1180
BspACI CCGC 4 cut(s) 356, 849, 918, 962
BspANI GGCC 3 cut(s) 666, 776, 875
BspCNI CTCAG 5 cut(s) 304, 445, 761, 767, 779
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 3 cut(s) 78, 181, 876
BspOI GCTAGC 1 cut(s) 1241
BspPI GGATC 1 cut(s) 1175
BspQI GCTCTTC 1 cut(s) 651
BspT107I GGYRCC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 2 cut(s) 276, 372
BssECI CCNNGG 2 cut(s) 661, 771
BssMI GATC 5 cut(s) 34, 823, 966, 971, 1180
Bst2UI CCWGG 5 cut(s) 170, 586, 837, 1097, 1111
Bst4CI ACNGT 2 cut(s) 176, 728
Bst6I CTCTTC 2 cut(s) 136, 651
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 932, 936, 1239
BstDEI CTNAG 7 cut(s) 59, 312, 453, 631, 748, 754, 766
BstF5I GGATG 3 cut(s) 539, 952, 1078
BstKTI GATC 5 cut(s) 37, 826, 969, 974, 1183
BstMAI GTCTC 3 cut(s) 23, 259, 763
BstMBI GATC 5 cut(s) 34, 823, 966, 971, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 418, 427
BstNI CCWGG 5 cut(s) 170, 586, 837, 1097, 1111
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 5 cut(s) 168, 584, 835, 1095, 1109
BstSFI CTRYAG 1 cut(s) 882
BstV1I GCAGC 3 cut(s) 417, 950, 997
BstV2I GAAGAC 1 cut(s) 800
BstX2I RGATCY 1 cut(s) 1180
BstXI CCANNNNNNTGG 1 cut(s) 1018
BstYI RGATCY 1 cut(s) 1180
Bsu36I CCTNAGG 1 cut(s) 748
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 3 cut(s) 666, 776, 875
BtgZI GCGATG 1 cut(s) 892
BtsCI GGATG 3 cut(s) 539, 952, 1078
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 333, 379, 819
Cac8I GCNNGC 3 cut(s) 932, 936, 1239
CciI TCATGA 1 cut(s) 826
Cfr13I GGNCC 1 cut(s) 874
CviAII CATG 9 cut(s) 151, 307, 447, 827, 862, 935, 1012, 1032, 1198
DdeI CTNAG 7 cut(s) 59, 312, 453, 631, 748, 754, 766
DpnI GATC 5 cut(s) 36, 825, 968, 973, 1182
DpnII GATC 5 cut(s) 34, 823, 966, 971, 1180
Eam1104I CTCTTC 2 cut(s) 136, 651
EarI CTCTTC 2 cut(s) 136, 651
EciI GGCGGA 1 cut(s) 977
Eco57I CTGAAG 2 cut(s) 1011, 1077
Eco81I CCTNAGG 1 cut(s) 748
EcoO109I RGGNCCY 1 cut(s) 874
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 5 cut(s) 168, 584, 835, 1095, 1109
FaeI CATG 9 cut(s) 154, 310, 450, 830, 865, 938, 1015, 1035, 1201
FaqI GGGAC 1 cut(s) 714
FatI CATG 9 cut(s) 150, 306, 446, 826, 861, 934, 1011, 1031, 1197
FbaI TGATCA 2 cut(s) 34, 823
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 5 cut(s) 357, 431, 849, 939, 986
FokI GGATG 3 cut(s) 526, 959, 1065
Fsp4HI GCNGC 5 cut(s) 357, 431, 849, 939, 986
FspBI CTAG 7 cut(s) 113, 318, 477, 489, 804, 915, 1238
GluI GCNGC 5 cut(s) 357, 431, 849, 939, 986
GsuI CTGGAG 2 cut(s) 607, 1118
HaeIII GGCC 3 cut(s) 666, 776, 875
Hin1II CATG 9 cut(s) 154, 310, 450, 830, 865, 938, 1015, 1035, 1201
HincII GTYRAC 1 cut(s) 895
HindII GTYRAC 1 cut(s) 895
HinfI GANTC 3 cut(s) 10, 267, 899
HphI GGTGA 3 cut(s) 118, 1073, 1241
Hpy166II GTNNAC 3 cut(s) 281, 377, 895
Hpy188I TCNGA 4 cut(s) 454, 971, 980, 993
Hpy188III TCNNGA 7 cut(s) 135, 395, 521, 600, 683, 827, 1178
Hpy8I GTNNAC 3 cut(s) 281, 377, 895
HpyAV CCTTC 5 cut(s) 188, 455, 459, 1052, 1211
HpyCH4III ACNGT 2 cut(s) 176, 728
HpyCH4V TGCA 5 cut(s) 218, 934, 938, 1121, 1197
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 427
HpyF3I CTNAG 7 cut(s) 59, 312, 453, 631, 748, 754, 766
Hsp92II CATG 9 cut(s) 154, 310, 450, 830, 865, 938, 1015, 1035, 1201
Ksp22I TGATCA 2 cut(s) 34, 823
Kzo9I GATC 5 cut(s) 34, 823, 966, 971, 1180
LguI GCTCTTC 1 cut(s) 651
Lsp1109I GCAGC 3 cut(s) 417, 950, 997
LweI GCATC 2 cut(s) 915, 997
MaeI CTAG 7 cut(s) 113, 318, 477, 489, 804, 915, 1238
MaeIII GTNAC 2 cut(s) 331, 1021
MalI GATC 5 cut(s) 36, 825, 968, 973, 1182
MbiI CCGCTC 1 cut(s) 356
MboI GATC 5 cut(s) 34, 823, 966, 971, 1180
MboII GAAGA 5 cut(s) 123, 638, 786, 789, 800
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 1 cut(s) 1180
MlyI GAGTC 3 cut(s) 19, 261, 893
MseI TTAA 4 cut(s) 41, 302, 471, 1049
MslI CAYNNNNRTG 2 cut(s) 866, 1149
MspR9I CCNGG 5 cut(s) 170, 586, 837, 1097, 1111
MunI CAATTG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 5 cut(s) 170, 586, 837, 1097, 1111
MwoI GCNNNNNNNGC 2 cut(s) 418, 427
NdeII GATC 5 cut(s) 34, 823, 966, 971, 1180
NheI GCTAGC 1 cut(s) 1237
NlaIII CATG 9 cut(s) 154, 310, 450, 830, 865, 938, 1015, 1035, 1201
NlaIV GGNNCC 3 cut(s) 78, 181, 876
NmeAIII GCCGAG 2 cut(s) 642, 752
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 938
PaeI GCATGC 1 cut(s) 938
PagI TCATGA 1 cut(s) 826
PciSI GCTCTTC 1 cut(s) 651
PctI GAATGC 1 cut(s) 1123
PfoI TCCNGGA 3 cut(s) 168, 584, 1095
PkrI GCNGC 5 cut(s) 358, 432, 850, 940, 987
PleI GAGTC 3 cut(s) 18, 261, 893
PpsI GAGTC 3 cut(s) 18, 261, 893
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 5 cut(s) 168, 584, 835, 1095, 1109
PspGI CCWGG 5 cut(s) 168, 584, 835, 1095, 1109
PspN4I GGNNCC 3 cut(s) 78, 181, 876
PspPI GGNCC 1 cut(s) 874
PsuI RGATCY 1 cut(s) 1180
RseI CAYNNNNRTG 2 cut(s) 866, 1149
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 4 cut(s) 41, 302, 471, 1049
SatI GCNGC 5 cut(s) 357, 431, 849, 939, 986
Sau3AI GATC 5 cut(s) 34, 823, 966, 971, 1180
Sau96I GGNCC 1 cut(s) 874
SchI GAGTC 3 cut(s) 19, 261, 893
ScrFI CCNGG 5 cut(s) 170, 586, 837, 1097, 1111
SfaNI GCATC 2 cut(s) 915, 997
SfcI CTRYAG 1 cut(s) 882
SmiMI CAYNNNNRTG 2 cut(s) 866, 1149
SphI GCATGC 1 cut(s) 938
SsiI CCGC 4 cut(s) 356, 849, 918, 962
SspMI CTAG 7 cut(s) 113, 318, 477, 489, 804, 915, 1238
StyD4I CCNGG 5 cut(s) 168, 584, 835, 1095, 1109
TaaI ACNGT 2 cut(s) 176, 728
TauI GCSGC 2 cut(s) 359, 851
Tru1I TTAA 4 cut(s) 41, 302, 471, 1049
Tru9I TTAA 4 cut(s) 41, 302, 471, 1049
TscAI CASTG 3 cut(s) 340, 379, 826
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 430, 938, 985
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 7 cut(s) 167, 338, 377, 639, 843, 1028, 1104
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 3 cut(s) 340, 379, 826
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 6 cut(s) 185, 492, 505, 603, 1015, 1211
XceI RCATGY 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 7 cut(s) 113, 318, 477, 489, 804, 915, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.