Rh6AG446000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015342
Physical Location & Seq
Forward (+)
63298501 .. 63304675
6175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG446000.1

Sequence Viewer

Length: 1242 bp
ATGAGGCAGAGTCGTTCCTCAAAGCAAGAGACTGATCAATTAATGGAAATAGATGACCTTAGTAAGCTCAAAGAGGAACCTCATCATCTGTCTGGTGCTTATATCCGTAGCCTAGTGAAACAACTCACCTCTTCAAGAACCAAAGACACCATGAACCCCAAAGACCTCCTGGACTGTGGCACCAAATTCAGGGAAGGATTTAGTGAAAACCAAAATGCACAGCAATCCCAACAACCTCAACAGCACAAAAAACAAGTAAGGAGGAGACTCCACACCAGTAGACCTTACCAAGAAAGGCTCTTAAACATGGCTGAGGCTAGGAGGGAGATTGTCACTGCTCTAAAGTTTCATAGAGCGGCTATGAAACAAGCCAGTGAACAACAGCAACAACATCAAGAACAAGAACAACAGCCACAATCGCAACAATTGCTGCCTCAACCCCACCCATGCTCTGAGCCAGAAGGAGGGATTAAATCTAGGAGAAATCCTAGAATTTACCCATCAAATTCAACCAATTATCTTGAAACCCTGCCTTACTCATCCAATTTTTCTCATCAATATCCCTCTGTTCCTAATCAATTTTCCTGGAGTTCTACTTCCAGAATTCCTCCTCCGCCTGTTTATGACTTCGATTTCACAGCTCTTCCAAGCCAGACCCTCGGCCTGAACCTCAACTTTCAAGATTTCAACAATATAAACACTACCCTTTACCACAACAGCAACAGTCCCCCGTTTTACTCAACCTCAGGCTCAGTCTCATTCTCAGCCTCGGCCTCATCTCCATCATCATCTTCTTCCCCTAGTCTTTCTATTGCCACTGATCATGAACTTCCTGGTTCATCAGCCGCAATATCACACATGGAAATGGAGGCCCCTGCTGTAGCTGATGTTGACGACTCTGGCATCGCTACTAGCGGTGGAGATGGCTTGCATGCAGCAATGGATGATGAGGAGATGGCGGAGATCAGATCAATCGGAGAGCAGCATCAGATGGAATGGAATGACACCATGAATTTGGTAGCTTCAGCATGGTGGTTCAAGTTCTTAAAGGCTGAAGATGATGATGGATGCCACCTTCCATTTGATGAAGTCCTGGAGTTTCCAGCCTGGCTGAATGCAAATGAGGGCAGTTTTCAACAACATTTGAATGATTACTACTCAGCAGATTATTTTCAAGATCCTGCCTTGCCTTGCATGGACATTGGAGAATTTGAAGGTTTTGATGGTGAATGGCTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

413

Amino Acids

46.62

Weight (kDa)

4.94

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21280 AT5G21280
fragaria_vesca FvH4_2g37040
malus_domestica MD08G1046900.v1.1 MD15G1047100.v1.1
prunus_persica Prupe.1G401300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304741
rosa_laevigata RLG00000010954
rosa_multiflora Rmu_ssc0000139.1_g000010
rosa_roxburghii Rroxscaffold_7G00163540
rosa_rugosa Rorug06G0334100
rosa_samantha Rh6AG446000 Rh6BG455600 Rh6CG459400 Rh6DG446300
rosa_wichuraiana Rw6G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 280
AciI CCGC 5 cut(s) 356, 614, 846, 915, 959
AclWI GGATC 1 cut(s) 1172
AcsI RAATTY 6 cut(s) 185, 492, 505, 603, 1012, 1208
AcuI CTGAAG 2 cut(s) 1008, 1074
AfiI CCNNNNNNNGG 2 cut(s) 189, 464
AjnI CCWGG 5 cut(s) 168, 584, 832, 1092, 1106
AluBI AGCT 5 cut(s) 67, 641, 884, 1022, 1238
AluI AGCT 5 cut(s) 67, 641, 884, 1022, 1238
Alw26I GTCTC 3 cut(s) 23, 259, 760
AlwI GGATC 1 cut(s) 1172
AoxI GGCC 3 cut(s) 661, 771, 870
ApeKI GCWGC 3 cut(s) 430, 935, 982
ApoI RAATTY 6 cut(s) 185, 492, 505, 603, 1012, 1208
AseI ATTAAT 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 871
AsuHPI GGTGA 2 cut(s) 118, 1238
AsuNHI GCTAGC 1 cut(s) 1234
AxyI CCTNAGG 1 cut(s) 745
BanI GGYRCC 1 cut(s) 179
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 417, 947, 994
BccI CCATC 7 cut(s) 508, 790, 917, 949, 985, 1058, 1217
BciT130I CCWGG 5 cut(s) 170, 586, 834, 1094, 1108
BclI TGATCA 2 cut(s) 34, 820
BcoDI GTCTC 3 cut(s) 23, 259, 760
BfaI CTAG 7 cut(s) 113, 318, 477, 489, 801, 912, 1235
BfmI CTRYAG 1 cut(s) 879
BisI GCNGC 5 cut(s) 357, 431, 846, 936, 983
BlsI GCNGC 5 cut(s) 358, 432, 847, 937, 984
Bme1390I CCNGG 5 cut(s) 170, 586, 834, 1094, 1108
BmgT120I GGNCC 1 cut(s) 871
BmiI GGNNCC 3 cut(s) 78, 181, 873
BmrFI CCNGG 5 cut(s) 170, 586, 834, 1094, 1108
BmsI GCATC 3 cut(s) 912, 994, 1058
BmtI GCTAGC 1 cut(s) 1238
BpmI CTGGAG 2 cut(s) 607, 1115
Bpu10I CCTNAGC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 658, 768
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 464
Bse1I ACTGG 2 cut(s) 276, 372
Bse21I CCTNAGG 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 945
BseBI CCWGG 5 cut(s) 170, 586, 834, 1094, 1108
BseDI CCNNGG 2 cut(s) 658, 768
BseGI GGATG 3 cut(s) 539, 949, 1073
BseLI CCNNNNNNNGG 2 cut(s) 189, 464
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 6 cut(s) 303, 444, 759, 765, 777, 1173
BseNI ACTGG 2 cut(s) 276, 372
BseRI GAGGAG 3 cut(s) 277, 600, 965
BseXI GCAGC 3 cut(s) 417, 947, 994
BshFI GGCC 3 cut(s) 663, 773, 872
BshNI GGYRCC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 2 cut(s) 189, 464
BsmAI GTCTC 3 cut(s) 23, 259, 760
BsmFI GGGAC 1 cut(s) 711
BsmI GAATGC 1 cut(s) 1120
BsnI GGCC 3 cut(s) 663, 773, 872
Bsp143I GATC 5 cut(s) 34, 820, 963, 968, 1177
BspACI CCGC 5 cut(s) 356, 614, 846, 915, 959
BspANI GGCC 3 cut(s) 663, 773, 872
BspCNI CTCAG 6 cut(s) 304, 445, 758, 764, 776, 1172
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 3 cut(s) 78, 181, 873
BspOI GCTAGC 1 cut(s) 1238
BspPI GGATC 1 cut(s) 1172
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 945
BsrI ACTGG 2 cut(s) 276, 372
BssECI CCNNGG 2 cut(s) 658, 768
BssMI GATC 5 cut(s) 34, 820, 963, 968, 1177
Bst2UI CCWGG 5 cut(s) 170, 586, 834, 1094, 1108
Bst4CI ACNGT 2 cut(s) 176, 725
Bst6I CTCTTC 2 cut(s) 136, 648
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 929, 933, 1236
BstDEI CTNAG 7 cut(s) 59, 312, 453, 745, 751, 763, 1159
BstF5I GGATG 3 cut(s) 539, 949, 1073
BstKTI GATC 5 cut(s) 37, 823, 966, 971, 1180
BstMAI GTCTC 3 cut(s) 23, 259, 760
BstMBI GATC 5 cut(s) 34, 820, 963, 968, 1177
BstMWI GCNNNNNNNGC 2 cut(s) 418, 427
BstNI CCWGG 5 cut(s) 170, 586, 834, 1094, 1108
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 5 cut(s) 168, 584, 832, 1092, 1106
BstSFI CTRYAG 1 cut(s) 879
BstV1I GCAGC 3 cut(s) 417, 947, 994
BstX2I RGATCY 1 cut(s) 1177
BstXI CCANNNNNNTGG 1 cut(s) 1015
BstYI RGATCY 1 cut(s) 1177
Bsu36I CCTNAGG 1 cut(s) 745
BsuRI GGCC 3 cut(s) 663, 773, 872
BtgZI GCGATG 1 cut(s) 889
BtsCI GGATG 3 cut(s) 539, 949, 1073
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 333, 379, 816
Cac8I GCNNGC 3 cut(s) 929, 933, 1236
CciI TCATGA 1 cut(s) 823
Cfr13I GGNCC 1 cut(s) 871
CviAII CATG 9 cut(s) 151, 307, 447, 824, 859, 932, 1009, 1029, 1195
DdeI CTNAG 7 cut(s) 59, 312, 453, 745, 751, 763, 1159
DpnI GATC 5 cut(s) 36, 822, 965, 970, 1179
DpnII GATC 5 cut(s) 34, 820, 963, 968, 1177
Eam1104I CTCTTC 2 cut(s) 136, 648
EarI CTCTTC 2 cut(s) 136, 648
EciI GGCGGA 2 cut(s) 603, 974
Eco57I CTGAAG 2 cut(s) 1008, 1074
Eco81I CCTNAGG 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 871
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 5 cut(s) 168, 584, 832, 1092, 1106
FaeI CATG 9 cut(s) 154, 310, 450, 827, 862, 935, 1012, 1032, 1198
FaqI GGGAC 1 cut(s) 711
FatI CATG 9 cut(s) 150, 306, 446, 823, 858, 931, 1008, 1028, 1194
FbaI TGATCA 2 cut(s) 34, 820
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 5 cut(s) 357, 431, 846, 936, 983
FokI GGATG 3 cut(s) 526, 956, 1080
Fsp4HI GCNGC 5 cut(s) 357, 431, 846, 936, 983
FspBI CTAG 7 cut(s) 113, 318, 477, 489, 801, 912, 1235
GluI GCNGC 5 cut(s) 357, 431, 846, 936, 983
GsuI CTGGAG 2 cut(s) 607, 1115
HaeIII GGCC 3 cut(s) 663, 773, 872
Hin1II CATG 9 cut(s) 154, 310, 450, 827, 862, 935, 1012, 1032, 1198
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HinfI GANTC 3 cut(s) 10, 267, 896
HphI GGTGA 2 cut(s) 118, 1238
Hpy166II GTNNAC 3 cut(s) 281, 377, 892
Hpy188I TCNGA 4 cut(s) 454, 968, 977, 990
Hpy188III TCNNGA 7 cut(s) 135, 395, 521, 600, 680, 824, 1175
Hpy8I GTNNAC 3 cut(s) 281, 377, 892
HpyAV CCTTC 4 cut(s) 188, 455, 1085, 1208
HpyCH4III ACNGT 2 cut(s) 176, 725
HpyCH4V TGCA 5 cut(s) 218, 931, 935, 1118, 1194
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 427
HpyF3I CTNAG 7 cut(s) 59, 312, 453, 745, 751, 763, 1159
Hsp92II CATG 9 cut(s) 154, 310, 450, 827, 862, 935, 1012, 1032, 1198
Ksp22I TGATCA 2 cut(s) 34, 820
Kzo9I GATC 5 cut(s) 34, 820, 963, 968, 1177
LguI GCTCTTC 1 cut(s) 648
Lsp1109I GCAGC 3 cut(s) 417, 947, 994
LweI GCATC 3 cut(s) 912, 994, 1058
MaeI CTAG 7 cut(s) 113, 318, 477, 489, 801, 912, 1235
MaeIII GTNAC 1 cut(s) 331
MalI GATC 5 cut(s) 36, 822, 965, 970, 1179
MbiI CCGCTC 1 cut(s) 356
MboI GATC 5 cut(s) 34, 820, 963, 968, 1177
MboII GAAGA 5 cut(s) 123, 635, 783, 786, 1067
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 1 cut(s) 1177
MlyI GAGTC 3 cut(s) 19, 261, 890
MseI TTAA 4 cut(s) 41, 302, 471, 1046
MslI CAYNNNNRTG 2 cut(s) 863, 1146
MspR9I CCNGG 5 cut(s) 170, 586, 834, 1094, 1108
MunI CAATTG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 1120
MvaI CCWGG 5 cut(s) 170, 586, 834, 1094, 1108
MwoI GCNNNNNNNGC 2 cut(s) 418, 427
NdeII GATC 5 cut(s) 34, 820, 963, 968, 1177
NheI GCTAGC 1 cut(s) 1234
NlaIII CATG 9 cut(s) 154, 310, 450, 827, 862, 935, 1012, 1032, 1198
NlaIV GGNNCC 3 cut(s) 78, 181, 873
NmeAIII GCCGAG 2 cut(s) 639, 749
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 935
PaeI GCATGC 1 cut(s) 935
PagI TCATGA 1 cut(s) 823
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 1 cut(s) 1120
PfoI TCCNGGA 3 cut(s) 168, 584, 1092
PkrI GCNGC 5 cut(s) 358, 432, 847, 937, 984
PleI GAGTC 3 cut(s) 18, 261, 890
PpsI GAGTC 3 cut(s) 18, 261, 890
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 5 cut(s) 168, 584, 832, 1092, 1106
PspGI CCWGG 5 cut(s) 168, 584, 832, 1092, 1106
PspN4I GGNNCC 3 cut(s) 78, 181, 873
PspPI GGNCC 1 cut(s) 871
PsuI RGATCY 1 cut(s) 1177
RseI CAYNNNNRTG 2 cut(s) 863, 1146
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 4 cut(s) 41, 302, 471, 1046
SatI GCNGC 5 cut(s) 357, 431, 846, 936, 983
Sau3AI GATC 5 cut(s) 34, 820, 963, 968, 1177
Sau96I GGNCC 1 cut(s) 871
SchI GAGTC 3 cut(s) 19, 261, 890
ScrFI CCNGG 5 cut(s) 170, 586, 834, 1094, 1108
SfaNI GCATC 3 cut(s) 912, 994, 1058
SfcI CTRYAG 1 cut(s) 879
SmiMI CAYNNNNRTG 2 cut(s) 863, 1146
SphI GCATGC 1 cut(s) 935
SsiI CCGC 5 cut(s) 356, 614, 846, 915, 959
SspMI CTAG 7 cut(s) 113, 318, 477, 489, 801, 912, 1235
StyD4I CCNGG 5 cut(s) 168, 584, 832, 1092, 1106
TaaI ACNGT 2 cut(s) 176, 725
TaqI TCGA 1 cut(s) 630
TauI GCSGC 2 cut(s) 359, 848
Tru1I TTAA 4 cut(s) 41, 302, 471, 1046
Tru9I TTAA 4 cut(s) 41, 302, 471, 1046
TscAI CASTG 3 cut(s) 340, 379, 823
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 430, 935, 982
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 7 cut(s) 167, 338, 377, 828, 840, 1025, 1101
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 3 cut(s) 340, 379, 823
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 6 cut(s) 185, 492, 505, 603, 1012, 1208
XceI RCATGY 1 cut(s) 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 7 cut(s) 113, 318, 477, 489, 801, 912, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.