Prupe.1G401300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015342
Physical Location & Seq
Forward (+)
35419412 .. 35432107
12696 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G401300.1

Sequence Viewer

Length: 1266 bp
ATGAGGCAGGGTCGATCCTCAAAGCAAGAGACCAAAGACTTAATGGAATTAGGTAAACTCAGTAAGCTCAAAGAGGAGCCTCATCATCTCTCTGGTGCTTACATCCGTAGCCTAGTGAAACAGCTCACCTCTTCAAGAACCAAAGACCCCATGAACCCCAATAAGGACCTAGACTGTGATGCTTTGCCCAACCAAAACATGGCCAAATATGGTGAAGGTTTTAGTGAAACCCAACAACATACACAGCAACCCCACCAGCCCCAACAACACAAAAAACAAGTGAGGCGGAGGCTTCACACAAGCAGGCCTTACCAAGAGAGGCTTCTAAATATGGCTGAGGCTAGGAGAGAGATTGTTACTGCCCTCAAGTTTCATAGGGCAGCTATGAAACAAGCCAGTGAACAACAGCAACAACAACATCAGGACCAAGAGCAACAGCCACAATCACAACAATTGCAGCCTCAGCCCCACCCCTGTTTTGAACAAGAAGGGAGAACTAAATCTAGGAGAAATCCTAGAATTTACCCATCAAGCACAGCCAATTATCCTGAAACTCTGCCCTTCCCATCTGATTTTTCTCATCATCAATATCCCTCTGTTCCAAATCCATATTCCTGGACTGCTTCCACAATTGCTCTTCCACCTGAAAATTTTGATTTCACACTTCCAAACCAGACTCTTGGCCTGAACCTCAATTTTCAAGATTTCAACAATATAAACACTACCCTTTACCACAGCAGCAACAGCCCACCATTTTACTCAACCTCAGCCTCATCTCCATCATCATCTTCTTCCCCAGGTCTCTCTGTTGCTACTGATCAGGAAATTCCTGGCTCAGCTGCAATTTCACAGATGGAAGTGGAGGCTCCTGCAGTGACTGATGTCACTGACTCTGGCATCACAATCAGTGGTGGAGGAGGCTTGCATGCAGCAATGGATGATGAGGAGATGGCAGAGATCAGATCAATAGGAGAGCAACACCAGATGGAATGGAATGACACCATGAATTTGGTAACGTCAGCATGGTGGTTTAAGTTCTTGAAGACCATGGAACTTGGGGGTCCAGAAGGCAAGCCTGAAGATGATAATGTGTGGTACCATCCATTTGATGAAGCCATGGAATTTCCAGCCTGGTTGAATGCAAATGAGAGCTGTTTTCAACATCATTTGAATGATTACTACTCAGAGGACTATTTCCAAGATCCTGCCTTGCCTTGCATGGACATTGGAGAAATTGAAGGTATTGATGGGGAGTGGTTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

47.8

Weight (kDa)

5.15

Isoelectric Point (pI)

66.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21280 AT5G21280
fragaria_vesca FvH4_2g37040
malus_domestica MD08G1046900.v1.1 MD15G1047100.v1.1
prunus_persica Prupe.1G401300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304741
rosa_laevigata RLG00000010954
rosa_multiflora Rmu_ssc0000139.1_g000010
rosa_roxburghii Rroxscaffold_7G00163540
rosa_rugosa Rorug06G0334100
rosa_samantha Rh6AG446000 Rh6BG455600 Rh6CG459400 Rh6DG446300
rosa_wichuraiana Rw6G038800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1095
AccB1I GGYRCC 1 cut(s) 1095
AccB7I CCANNNNNTGG 1 cut(s) 199
AciI CCGC 1 cut(s) 286
AclWI GGATC 2 cut(s) 9, 1196
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 5 cut(s) 519, 649, 825, 1006, 1121
AcuI CTGAAG 1 cut(s) 1098
AfaI GTAC 1 cut(s) 1097
AfiI CCNNNNNNNGG 2 cut(s) 163, 199
AgsI TTSAA 9 cut(s) 135, 482, 701, 709, 1042, 1138, 1160, 1171, 1238
AjnI CCWGG 4 cut(s) 614, 796, 829, 1130
AjuI GAANNNNNNNTTGG 4 cut(s) 306, 338, 595, 627
AluBI AGCT 6 cut(s) 67, 124, 383, 839, 1152, 1262
AluI AGCT 6 cut(s) 67, 124, 383, 839, 1152, 1262
Alw26I GTCTC 2 cut(s) 23, 806
AlwI GGATC 2 cut(s) 9, 1196
AlwNI CAGNNNCTG 1 cut(s) 878
AoxI GGCC 3 cut(s) 201, 305, 682
ApeKI GCWGC 5 cut(s) 380, 457, 738, 839, 929
ApoI RAATTY 5 cut(s) 519, 649, 825, 1006, 1121
Asp718I GGTACC 1 cut(s) 1095
AspS9I GGNCC 3 cut(s) 166, 424, 1061
AsuHPI GGTGA 2 cut(s) 118, 224
AvaII GGWCC 3 cut(s) 166, 424, 1061
BalI TGGCCA 1 cut(s) 203
BanI GGYRCC 1 cut(s) 1095
BbsI GAAGAC 1 cut(s) 1049
BbvCI CCTCAGC 3 cut(s) 336, 462, 766
BbvI GCAGC 5 cut(s) 392, 469, 750, 826, 941
BccI CCATC 8 cut(s) 535, 574, 787, 847, 943, 979, 1107, 1241
BciT130I CCWGG 4 cut(s) 616, 798, 831, 1132
BclI TGATCA 1 cut(s) 817
BcoDI GTCTC 2 cut(s) 23, 806
BfaI CTAG 5 cut(s) 113, 170, 342, 504, 516
BfmI CTRYAG 1 cut(s) 870
BisI GCNGC 5 cut(s) 381, 458, 739, 840, 930
BlpI GCTNAGC 1 cut(s) 835
BlsI GCNGC 5 cut(s) 382, 459, 740, 841, 931
Bme1390I CCNGG 4 cut(s) 616, 798, 831, 1132
Bme18I GGWCC 3 cut(s) 166, 424, 1061
BmgT120I GGNCC 3 cut(s) 166, 424, 1061
BmiI GGNNCC 4 cut(s) 78, 867, 1062, 1097
BmrFI CCNGG 4 cut(s) 616, 798, 831, 1132
BmsI GCATC 2 cut(s) 169, 906
BoxI GACNNNNGTC 1 cut(s) 881
BpiI GAAGAC 1 cut(s) 1049
Bpu10I CCTNAGC 3 cut(s) 336, 462, 766
Bpu1102I GCTNAGC 1 cut(s) 835
BpuEI CTTGAG 1 cut(s) 350
BsaI GGTCTC 2 cut(s) 23, 806
BsaJI CCNNGG 3 cut(s) 796, 1047, 1116
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 199
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 939
BseBI CCWGG 4 cut(s) 616, 798, 831, 1132
BseDI CCNNGG 3 cut(s) 796, 1047, 1116
BseGI GGATG 3 cut(s) 102, 943, 1099
BseLI CCNNNNNNNGG 2 cut(s) 163, 199
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 6 cut(s) 73, 327, 476, 780, 849, 1197
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 3 cut(s) 89, 930, 959
BseXI GCAGC 5 cut(s) 392, 469, 750, 826, 941
BshFI GGCC 3 cut(s) 203, 307, 684
BshNI GGYRCC 1 cut(s) 1095
BslI CCNNNNNNNGG 2 cut(s) 163, 199
BsmAI GTCTC 2 cut(s) 23, 806
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 3 cut(s) 203, 307, 684
Bso31I GGTCTC 2 cut(s) 23, 806
Bsp143I GATC 5 cut(s) 14, 817, 957, 962, 1201
Bsp1720I GCTNAGC 1 cut(s) 835
Bsp19I CCATGG 2 cut(s) 1047, 1116
BspACI CCGC 1 cut(s) 286
BspANI GGCC 3 cut(s) 203, 307, 684
BspCNI CTCAG 6 cut(s) 72, 328, 475, 779, 848, 1196
BspLI GGNNCC 4 cut(s) 78, 867, 1062, 1097
BspMAI CTGCAG 1 cut(s) 874
BspPI GGATC 2 cut(s) 9, 1196
BspQI GCTCTTC 1 cut(s) 642
BspT107I GGYRCC 1 cut(s) 1095
BspTNI GGTCTC 2 cut(s) 23, 806
BsrDI GCAATG 1 cut(s) 939
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 3 cut(s) 796, 1047, 1116
BssMI GATC 5 cut(s) 14, 817, 957, 962, 1201
BssT1I CCWWGG 2 cut(s) 1047, 1116
Bst2UI CCWGG 4 cut(s) 616, 798, 831, 1132
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 136, 642
BstC8I GCNNGC 4 cut(s) 305, 923, 927, 1073
BstDEI CTNAG 6 cut(s) 59, 336, 462, 766, 835, 1183
BstDSI CCRYGG 2 cut(s) 1047, 1116
BstF5I GGATG 3 cut(s) 102, 943, 1099
BstKTI GATC 5 cut(s) 17, 820, 960, 965, 1204
BstMAI GTCTC 2 cut(s) 23, 806
BstMBI GATC 5 cut(s) 14, 817, 957, 962, 1201
BstMWI GCNNNNNNNGC 2 cut(s) 463, 744
BstNI CCWGG 4 cut(s) 616, 798, 831, 1132
BstNSI RCATGY 1 cut(s) 929
BstPAI GACNNNNGTC 1 cut(s) 881
BstSCI CCNGG 4 cut(s) 614, 796, 829, 1130
BstSFI CTRYAG 1 cut(s) 870
BstV1I GCAGC 5 cut(s) 392, 469, 750, 826, 941
BstV2I GAAGAC 1 cut(s) 1049
BstX2I RGATCY 1 cut(s) 1201
BstXI CCANNNNNNTGG 3 cut(s) 615, 680, 1009
BstYI RGATCY 1 cut(s) 1201
BsuRI GGCC 3 cut(s) 203, 307, 684
BtgI CCRYGG 2 cut(s) 1047, 1116
BtsCI GGATG 3 cut(s) 102, 943, 1099
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 4 cut(s) 403, 879, 885, 913
Cac8I GCNNGC 4 cut(s) 305, 923, 927, 1073
CaiI CAGNNNCTG 1 cut(s) 878
Cfr13I GGNCC 3 cut(s) 166, 424, 1061
Csp6I GTAC 1 cut(s) 1096
CviAII CATG 8 cut(s) 151, 199, 926, 1003, 1023, 1048, 1117, 1219
CviQI GTAC 1 cut(s) 1096
DdeI CTNAG 6 cut(s) 59, 336, 462, 766, 835, 1183
DpnI GATC 5 cut(s) 16, 819, 959, 964, 1203
DpnII GATC 5 cut(s) 14, 817, 957, 962, 1201
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 136, 642
EarI CTCTTC 2 cut(s) 136, 642
EciI GGCGGA 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 1047, 1116
Eco147I AGGCCT 1 cut(s) 307
Eco31I GGTCTC 2 cut(s) 23, 806
Eco47I GGWCC 3 cut(s) 166, 424, 1061
Eco57I CTGAAG 1 cut(s) 1098
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 4 cut(s) 614, 796, 829, 1130
EcoT14I CCWWGG 2 cut(s) 1047, 1116
ErhI CCWWGG 2 cut(s) 1047, 1116
FaeI CATG 8 cut(s) 154, 202, 929, 1006, 1026, 1051, 1120, 1222
FalI AAGNNNNNCTT 4 cut(s) 292, 324, 306, 338
FatI CATG 8 cut(s) 150, 198, 925, 1002, 1022, 1047, 1116, 1218
FbaI TGATCA 1 cut(s) 817
Fnu4HI GCNGC 5 cut(s) 381, 458, 739, 840, 930
FokI GGATG 3 cut(s) 89, 950, 1086
Fsp4HI GCNGC 5 cut(s) 381, 458, 739, 840, 930
FspBI CTAG 5 cut(s) 113, 170, 342, 504, 516
GluI GCNGC 5 cut(s) 381, 458, 739, 840, 930
HaeIII GGCC 3 cut(s) 203, 307, 684
Hin1II CATG 8 cut(s) 154, 202, 929, 1006, 1026, 1051, 1120, 1222
HinfI GANTC 2 cut(s) 676, 890
HphI GGTGA 2 cut(s) 118, 224
Hpy166II GTNNAC 2 cut(s) 56, 401
Hpy188I TCNGA 3 cut(s) 571, 962, 1186
Hpy188III TCNNGA 7 cut(s) 135, 422, 548, 701, 821, 1039, 1064
Hpy8I GTNNAC 2 cut(s) 56, 401
HpyAV CCTTC 5 cut(s) 209, 482, 571, 1061, 1232
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 1016
HpyCH4V TGCA 7 cut(s) 457, 842, 872, 925, 929, 1142, 1218
HpyF10VI GCNNNNNNNGC 2 cut(s) 463, 744
HpyF3I CTNAG 6 cut(s) 59, 336, 462, 766, 835, 1183
HpySE526I ACGT 1 cut(s) 1016
Hsp92II CATG 8 cut(s) 154, 202, 929, 1006, 1026, 1051, 1120, 1222
KpnI GGTACC 1 cut(s) 1099
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 5 cut(s) 14, 817, 957, 962, 1201
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 2 cut(s) 76, 871
Lsp1109I GCAGC 5 cut(s) 392, 469, 750, 826, 941
LweI GCATC 2 cut(s) 169, 906
MaeI CTAG 5 cut(s) 113, 170, 342, 504, 516
MaeII ACGT 1 cut(s) 1016
MaeIII GTNAC 4 cut(s) 355, 874, 883, 1012
MalI GATC 5 cut(s) 16, 819, 959, 964, 1203
MboI GATC 5 cut(s) 14, 817, 957, 962, 1201
MboII GAAGA 6 cut(s) 123, 629, 780, 783, 1054, 1091
MfeI CAATTG 2 cut(s) 452, 630
MflI RGATCY 1 cut(s) 1201
MlsI TGGCCA 1 cut(s) 203
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 2 cut(s) 670, 884
Mox20I TGGCCA 1 cut(s) 203
MscI TGGCCA 1 cut(s) 203
MseI TTAA 2 cut(s) 41, 1032
MslI CAYNNNNRTG 1 cut(s) 1170
Msp20I TGGCCA 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 839
MspR9I CCNGG 4 cut(s) 616, 798, 831, 1132
MunI CAATTG 2 cut(s) 452, 630
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 4 cut(s) 616, 798, 831, 1132
MwoI GCNNNNNNNGC 2 cut(s) 463, 744
NcoI CCATGG 2 cut(s) 1047, 1116
NdeII GATC 5 cut(s) 14, 817, 957, 962, 1201
NlaIII CATG 8 cut(s) 154, 202, 929, 1006, 1026, 1051, 1120, 1222
NlaIV GGNNCC 4 cut(s) 78, 867, 1062, 1097
NmuCI GTSAC 2 cut(s) 874, 883
NspI RCATGY 1 cut(s) 929
PaeI GCATGC 1 cut(s) 929
PceI AGGCCT 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 642
PctI GAATGC 1 cut(s) 1144
PflMI CCANNNNNTGG 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 614
PkrI GCNGC 5 cut(s) 382, 459, 740, 841, 931
PleI GAGTC 2 cut(s) 670, 884
PpsI GAGTC 2 cut(s) 670, 884
PpuMI RGGWCCY 1 cut(s) 166
PshAI GACNNNNGTC 1 cut(s) 881
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 4 cut(s) 614, 796, 829, 1130
PspGI CCWGG 4 cut(s) 614, 796, 829, 1130
PspN4I GGNNCC 4 cut(s) 78, 867, 1062, 1097
PspPI GGNCC 3 cut(s) 166, 424, 1061
PspPPI RGGWCCY 1 cut(s) 166
PstI CTGCAG 1 cut(s) 874
PstNI CAGNNNCTG 1 cut(s) 878
PsuI RGATCY 1 cut(s) 1201
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 1 cut(s) 1097
RsaNI GTAC 1 cut(s) 1096
RseI CAYNNNNRTG 1 cut(s) 1170
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 2 cut(s) 41, 1032
SatI GCNGC 5 cut(s) 381, 458, 739, 840, 930
Sau3AI GATC 5 cut(s) 14, 817, 957, 962, 1201
Sau96I GGNCC 3 cut(s) 166, 424, 1061
SchI GAGTC 2 cut(s) 670, 884
ScrFI CCNGG 4 cut(s) 616, 798, 831, 1132
SfaNI GCATC 2 cut(s) 169, 906
SfcI CTRYAG 1 cut(s) 870
SinI GGWCC 3 cut(s) 166, 424, 1061
SmiMI CAYNNNNRTG 1 cut(s) 1170
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SphI GCATGC 1 cut(s) 929
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 1 cut(s) 286
SspMI CTAG 5 cut(s) 113, 170, 342, 504, 516
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 4 cut(s) 614, 796, 829, 1130
StyI CCWWGG 2 cut(s) 1047, 1116
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 1019
TaqI TCGA 1 cut(s) 13
Tru1I TTAA 2 cut(s) 41, 1032
Tru9I TTAA 2 cut(s) 41, 1032
TscAI CASTG 4 cut(s) 403, 879, 892, 913
TseFI GTSAC 2 cut(s) 874, 883
TseI GCWGC 5 cut(s) 380, 457, 738, 839, 929
Tsp45I GTSAC 2 cut(s) 874, 883
TspDTI ATGAA 5 cut(s) 167, 362, 401, 1019, 1125
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 4 cut(s) 403, 879, 892, 913
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 3 cut(s) 166, 424, 1061
XapI RAATTY 5 cut(s) 519, 649, 825, 1006, 1121
XceI RCATGY 1 cut(s) 929
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 196
XspI CTAG 5 cut(s) 113, 170, 342, 504, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.