Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017995

Physical Location & Seq

Genomic Coordinates Forward (+)

27472284 .. 27473093

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATCAACCGTGTTGAATTTGTTCATTCCAAATACTATCTACATCGTGATATCAAGCCAGACAATTTTCTCATGGGATTAGGAAGGCGTGCAAATCAGGGGCTAAAAGCTCAGAAGAAAATTAGTGAGAAAAAGGTTTCTACTTCAATTGAGGAATTGTGTCGTGGTTATCCAACAGAATTTGCATCATATTTCCATTACTGTCGCTCACTACGATTCGATGACAAGCCAGACTATTTTTATCCGAAAAAGATTTTCCGTGATCTCTACATTCGTGAAGGTTTCCAGTTTGATCATGTGTTTGACTGGACAAATTTGAAGTATCAGCAATCACAGCTGGCTACACCTCCAAGCCGTGCCCTAGGTGCTGGAACTAGTTCGGGAATGCCGCATGCTCCTGCCATTGTGGACAGGCCGATAGCTGAGGAAGATGGGCGGAGAATACCAGGACTAAATTATGCGTGTGTCAAGGCAGAGAAATTCAATTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

165

Amino Acids

19.13

Weight (kDa)

9.23

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017995)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37850
rosa_chinensis	RchiOBHm_Chr2g0143751
rosa_multiflora	Rmu_sc0028630.1_g000001
rosa_samantha	Rh2BG445400 Rh2BG445700 Rh2BG446900 Rh2BG447300 Rh2BG447800 Rh2BG448000 Rh2DG457300
rosa_wichuraiana	Rw2G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	389, 436
AcsI	RAATTY	4 cut(s)	17, 179, 313, 479
AgsI	TTSAA	4 cut(s)	17, 147, 319, 484
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	3 cut(s)	110, 337, 422
AluI	AGCT	3 cut(s)	110, 337, 422
AoxI	GGCC	1 cut(s)	413
ApoI	RAATTY	4 cut(s)	17, 179, 313, 479
Asp700I	GAANNNNTTC	2 cut(s)	21, 376
AspA2I	CCTAGG	1 cut(s)	361
AvrII	CCTAGG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	423
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	2 cut(s)	3, 292
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	2 cut(s)	362, 375
BisI	GCNGC	1 cut(s)	389
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	286, 311
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	125, 414
BseNI	ACTGG	2 cut(s)	286, 311
BseSI	GKGCMC	1 cut(s)	361
BshFI	GGCC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	3, 262, 292
BspACI	CCGC	2 cut(s)	389, 436
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	2 cut(s)	124, 415
BsrI	ACTGG	2 cut(s)	286, 311
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	3, 262, 292
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	11, 203
BstC8I	GCNNGC	3 cut(s)	90, 339, 393
BstDEI	CTNAG	2 cut(s)	111, 423
BstKTI	GATC	3 cut(s)	6, 265, 295
BstMBI	GATC	3 cut(s)	3, 262, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 365
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	90, 339, 393
CviAII	CATG	3 cut(s)	73, 296, 392
CviJI	RGCY	9 cut(s)	58, 103, 110, 229, 337, 341, 354, 415, 422
CviKI_1	RGCY	9 cut(s)	58, 103, 110, 229, 337, 341, 354, 415, 422
DdeI	CTNAG	2 cut(s)	111, 423
DpnI	GATC	3 cut(s)	5, 264, 294
DpnII	GATC	3 cut(s)	3, 262, 292
EciI	GGCGGA	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	445
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	76, 299, 395
FaiI	YATR	5 cut(s)	74, 190, 297, 393, 459
FatI	CATG	3 cut(s)	72, 295, 391
FbaI	TGATCA	2 cut(s)	3, 292
Fnu4HI	GCNGC	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	2 cut(s)	362, 375
GluI	GCNGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	415
Hin1II	CATG	3 cut(s)	76, 299, 395
HinfI	GANTC	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	114, 246
Hpy188III	TCNNGA	3 cut(s)	47, 275, 381
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	78, 272
HpyCH4III	ACNGT	2 cut(s)	11, 203
HpyCH4V	TGCA	2 cut(s)	92, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 365
HpyF3I	CTNAG	2 cut(s)	111, 423
Hsp92II	CATG	3 cut(s)	76, 299, 395
Ksp22I	TGATCA	2 cut(s)	3, 292
Kzo9I	GATC	3 cut(s)	3, 262, 292
LmnI	GCTCC	1 cut(s)	400
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	2 cut(s)	362, 375
MalI	GATC	3 cut(s)	5, 264, 294
MboI	GATC	3 cut(s)	3, 262, 292
MboII	GAAGA	2 cut(s)	127, 440
MfeI	CAATTG	2 cut(s)	147, 484
MhlI	GDGCHC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	145, 357, 418
MroXI	GAANNNNTTC	2 cut(s)	21, 376
MspA1I	CMGCKG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	2 cut(s)	147, 484
Mva1269I	GAATGC	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	334, 365
NdeII	GATC	3 cut(s)	3, 262, 292
NlaIII	CATG	3 cut(s)	76, 299, 395
NspI	RCATGY	1 cut(s)	395
PaeI	GCATGC	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PctI	GAATGC	1 cut(s)	390
PdmI	GAANNNNTTC	2 cut(s)	21, 376
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	337
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	3 cut(s)	3, 262, 292
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	7 cut(s)	112, 138, 283, 339, 349, 367, 424
SfaNI	GCATC	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	374
SphI	GCATGC	1 cut(s)	395
SsiI	CCGC	2 cut(s)	389, 436
SspMI	CTAG	2 cut(s)	362, 375
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	11, 203
TaqI	TCGA	1 cut(s)	219
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	248
XapI	RAATTY	4 cut(s)	17, 179, 313, 479
XceI	RCATGY	1 cut(s)	395
XmaJI	CCTAGG	1 cut(s)	361
XmnI	GAANNNNTTC	2 cut(s)	21, 376
XspI	CTAG	2 cut(s)	362, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.