Rh2BG445700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017995
Physical Location & Seq
Reverse (-)
63010661 .. 63012127
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG445700.1

Sequence Viewer

Length: 627 bp
ATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTGTACGTTTTGATGATAAACCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCACCTGAAATTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCAAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

208

Amino Acids

23.31

Weight (kDa)

9.74

Isoelectric Point (pI)

66.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017995)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37850
rosa_chinensis RchiOBHm_Chr2g0143751
rosa_multiflora Rmu_sc0028630.1_g000001
rosa_samantha Rh2BG445400 Rh2BG445700 Rh2BG446900 Rh2BG447300 Rh2BG447800 Rh2BG448000 Rh2DG457300
rosa_wichuraiana Rw2G035820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AciI CCGC 1 cut(s) 511
AclWI GGATC 3 cut(s) 380, 458, 529
AcsI RAATTY 2 cut(s) 131, 403
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 2 cut(s) 5, 165
AfiI CCNNNNNNNGG 2 cut(s) 32, 396
AgsI TTSAA 3 cut(s) 40, 271, 335
AjnI CCWGG 2 cut(s) 424, 616
AluBI AGCT 1 cut(s) 432
AluI AGCT 1 cut(s) 432
Alw21I GWGCWC 1 cut(s) 313
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 3 cut(s) 380, 458, 529
AoxI GGCC 1 cut(s) 105
ApaLI GTGCAC 1 cut(s) 309
ApoI RAATTY 2 cut(s) 131, 403
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 410
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 313
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 313
BccI CCATC 1 cut(s) 475
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 2 cut(s) 426, 618
BfaI CTAG 2 cut(s) 501, 546
BfmI CTRYAG 2 cut(s) 154, 537
BglII AGATCT 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 426, 618
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 2 cut(s) 426, 618
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 26, 115
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 396
Bse1I ACTGG 2 cut(s) 373, 523
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 2 cut(s) 426, 618
BseDI CCNNGG 2 cut(s) 26, 115
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 2 cut(s) 32, 396
BseMI GCAATG 1 cut(s) 492
BseNI ACTGG 2 cut(s) 373, 523
BseSI GKGCMC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 32, 396
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 6 cut(s) 72, 158, 264, 385, 463, 521
Bsp19I CCATGG 1 cut(s) 26
Bsp68I TCGCGA 1 cut(s) 228
BspACI CCGC 1 cut(s) 511
BspANI GGCC 1 cut(s) 107
BspFNI CGCG 1 cut(s) 228
BspPI GGATC 3 cut(s) 380, 458, 529
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 2 cut(s) 373, 523
BssECI CCNNGG 2 cut(s) 26, 115
BssMI GATC 6 cut(s) 72, 158, 264, 385, 463, 521
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 426, 618
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 11, 624
BstDSI CCRYGG 2 cut(s) 26, 115
BstENI CCTNNNNNAGG 1 cut(s) 394
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 1 cut(s) 228
BstKTI GATC 6 cut(s) 75, 161, 267, 388, 466, 524
BstMBI GATC 6 cut(s) 72, 158, 264, 385, 463, 521
BstNI CCWGG 2 cut(s) 426, 618
BstSCI CCNGG 2 cut(s) 424, 616
BstSFI CTRYAG 2 cut(s) 154, 537
BstSLI GKGCMC 1 cut(s) 313
BstUI CGCG 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 158, 385
BstYI RGATCY 2 cut(s) 158, 385
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 2 cut(s) 26, 115
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 2 cut(s) 82, 580
BtuMI TCGCGA 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 410
CseI GACGC 1 cut(s) 491
Csp6I GTAC 2 cut(s) 4, 164
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 1 cut(s) 27
CviJI RGCY 5 cut(s) 44, 107, 432, 536, 586
CviKI_1 RGCY 5 cut(s) 44, 107, 432, 536, 586
CviQI GTAC 2 cut(s) 4, 164
DdeI CTNAG 2 cut(s) 11, 624
DpnI GATC 6 cut(s) 74, 160, 266, 387, 465, 523
DpnII GATC 6 cut(s) 72, 158, 264, 385, 463, 521
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 394
EcoRII CCWGG 2 cut(s) 424, 616
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 1 cut(s) 30
FaiI YATR 6 cut(s) 28, 66, 112, 142, 189, 249
FatI CATG 1 cut(s) 26
FokI GGATG 1 cut(s) 569
FspBI CTAG 2 cut(s) 501, 546
HaeIII GGCC 1 cut(s) 107
HgaI GACGC 1 cut(s) 491
Hin1II CATG 1 cut(s) 30
HincII GTYRAC 2 cut(s) 93, 516
HindII GTYRAC 2 cut(s) 93, 516
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 1 cut(s) 578
Hpy166II GTNNAC 3 cut(s) 93, 311, 516
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 5 cut(s) 212, 227, 268, 408, 554
Hpy8I GTNNAC 3 cut(s) 93, 311, 516
HpyAV CCTTC 2 cut(s) 34, 224
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 166, 394
HpyCH4V TGCA 4 cut(s) 311, 326, 458, 560
HpyF3I CTNAG 2 cut(s) 11, 624
HpySE526I ACGT 2 cut(s) 166, 394
Hsp92II CATG 1 cut(s) 30
Kzo9I GATC 6 cut(s) 72, 158, 264, 385, 463, 521
LweI GCATC 1 cut(s) 547
MaeI CTAG 2 cut(s) 501, 546
MaeII ACGT 2 cut(s) 166, 394
MaeIII GTNAC 1 cut(s) 212
MalI GATC 6 cut(s) 74, 160, 266, 387, 465, 523
MboI GATC 6 cut(s) 72, 158, 264, 385, 463, 521
MboII GAAGA 3 cut(s) 14, 82, 211
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 2 cut(s) 158, 385
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 5 cut(s) 99, 131, 318, 403, 564
MroXI GAANNNNTTC 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 426, 618
MunI CAATTG 1 cut(s) 99
MvaI CCWGG 2 cut(s) 426, 618
MvnI CGCG 1 cut(s) 228
NcoI CCATGG 1 cut(s) 26
NdeII GATC 6 cut(s) 72, 158, 264, 385, 463, 521
NlaIII CATG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 212
NruI TCGCGA 1 cut(s) 228
PceI AGGCCT 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 578
PfoI TCCNGGA 2 cut(s) 424, 616
Ppu21I YACGTR 1 cut(s) 395
Psp6I CCWGG 2 cut(s) 424, 616
PspGI CCWGG 2 cut(s) 424, 616
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 2 cut(s) 158, 385
RruI TCGCGA 1 cut(s) 228
RsaI GTAC 2 cut(s) 5, 165
RsaNI GTAC 2 cut(s) 4, 164
Sau3AI GATC 6 cut(s) 72, 158, 264, 385, 463, 521
Sau96I GGNCC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 426, 618
SduI GDGCHC 1 cut(s) 313
SetI ASST 9 cut(s) 169, 219, 235, 301, 316, 349, 367, 397, 434
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 2 cut(s) 154, 537
SinI GGWCC 1 cut(s) 410
Sse9I AATT 5 cut(s) 99, 131, 318, 403, 564
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 1 cut(s) 511
SspMI CTAG 2 cut(s) 501, 546
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 424, 616
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 2 cut(s) 169, 397
TaqII GACCGA 1 cut(s) 427
TasI AATT 5 cut(s) 99, 131, 318, 403, 564
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 578
TscAI CASTG 2 cut(s) 82, 580
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 2 cut(s) 82, 580
VneI GTGCAC 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 410
XagI CCTNNNNNAGG 1 cut(s) 394
XapI RAATTY 2 cut(s) 131, 403
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 501, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.