Rw2G035820
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017995
Physical Location & Seq
Forward (+)
58883563 .. 58886682
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035820.1

Sequence Viewer

Length: 576 bp
ATGTGCGATGGTTTGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTGTACGTTTTGATGATAAACCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCAAGCCCTCTCAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

191

Amino Acids

21.23

Weight (kDa)

9.51

Isoelectric Point (pI)

67.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017995)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37850
rosa_chinensis RchiOBHm_Chr2g0143751
rosa_multiflora Rmu_sc0028630.1_g000001
rosa_samantha Rh2BG445400 Rh2BG445700 Rh2BG446900 Rh2BG447300 Rh2BG447800 Rh2BG448000 Rh2DG457300
rosa_wichuraiana Rw2G035820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 239
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 433
AclWI GGATC 3 cut(s) 302, 380, 451
AcsI RAATTY 2 cut(s) 41, 325
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 2 cut(s) 75, 567
AfiI CCNNNNNNNGG 3 cut(s) 218, 239, 318
AgsI TTSAA 2 cut(s) 181, 269
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 237, 354
AluI AGCT 2 cut(s) 237, 354
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 3 cut(s) 302, 380, 451
AoxI GGCC 1 cut(s) 15
ApoI RAATTY 2 cut(s) 41, 325
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 230, 332
AvaII GGWCC 2 cut(s) 230, 332
BauI CACGAG 1 cut(s) 216
BccI CCATC 2 cut(s) 2, 397
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 2 cut(s) 423, 468
BfmI CTRYAG 2 cut(s) 64, 459
BglII AGATCT 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 2 cut(s) 230, 332
BmgT120I GGNCC 2 cut(s) 230, 332
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 239, 318
Bse1I ACTGG 3 cut(s) 251, 295, 445
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 3 cut(s) 218, 239, 318
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 527, 538
BseNI ACTGG 3 cut(s) 251, 295, 445
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 218, 239, 318
BsmAI GTCTC 1 cut(s) 530
BsnI GGCC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 530
Bsp143I GATC 5 cut(s) 68, 174, 307, 385, 443
Bsp68I TCGCGA 1 cut(s) 138
BspACI CCGC 1 cut(s) 433
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 2 cut(s) 526, 537
BspFNI CGCG 1 cut(s) 138
BspPI GGATC 3 cut(s) 302, 380, 451
BspTNI GGTCTC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 414
BsrI ACTGG 3 cut(s) 251, 295, 445
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 5 cut(s) 68, 174, 307, 385, 443
BssSI CACGAG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 65, 570
Bst6I CTCTTC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 513, 524
BstDSI CCRYGG 1 cut(s) 25
BstENI CCTNNNNNAGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 5 cut(s) 71, 177, 310, 388, 446
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 5 cut(s) 68, 174, 307, 385, 443
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 2 cut(s) 64, 459
BstUI CGCG 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 68, 307
BstYI RGATCY 2 cut(s) 68, 307
BsuRI GGCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 502
BtuMI TCGCGA 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 230, 332
CseI GACGC 1 cut(s) 413
Csp6I GTAC 2 cut(s) 74, 566
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviJI RGCY 5 cut(s) 17, 237, 354, 458, 508
CviKI_1 RGCY 5 cut(s) 17, 237, 354, 458, 508
CviQI GTAC 2 cut(s) 74, 566
DdeI CTNAG 2 cut(s) 513, 524
DpnI GATC 5 cut(s) 70, 176, 309, 387, 445
DpnII GATC 5 cut(s) 68, 174, 307, 385, 443
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 530
Eco47I GGWCC 2 cut(s) 230, 332
Eco57I CTGAAG 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 346
FaiI YATR 4 cut(s) 22, 52, 99, 159
FokI GGATG 1 cut(s) 491
FspBI CTAG 2 cut(s) 423, 468
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 17
HgaI GACGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 1 cut(s) 500
Hpy166II GTNNAC 2 cut(s) 438, 519
Hpy188I TCNGA 2 cut(s) 108, 527
Hpy188III TCNNGA 6 cut(s) 122, 137, 178, 240, 330, 476
Hpy8I GTNNAC 2 cut(s) 438, 519
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 2 cut(s) 134, 551
HpyCH4III ACNGT 2 cut(s) 65, 570
HpyCH4IV ACGT 2 cut(s) 76, 316
HpyCH4V TGCA 3 cut(s) 260, 380, 482
HpyF3I CTNAG 2 cut(s) 513, 524
HpySE526I ACGT 2 cut(s) 76, 316
Kzo9I GATC 5 cut(s) 68, 174, 307, 385, 443
LweI GCATC 1 cut(s) 469
MaeI CTAG 2 cut(s) 423, 468
MaeII ACGT 2 cut(s) 76, 316
MaeIII GTNAC 1 cut(s) 122
MalI GATC 5 cut(s) 70, 176, 309, 387, 445
MboI GATC 5 cut(s) 68, 174, 307, 385, 443
MboII GAAGA 1 cut(s) 121
MflI RGATCY 2 cut(s) 68, 307
MluCI AATT 3 cut(s) 41, 325, 486
MnlI CCTC 8 cut(s) 58, 219, 258, 322, 447, 520, 521, 533
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 1 cut(s) 549
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 138
NdeII GATC 5 cut(s) 68, 174, 307, 385, 443
NmuCI GTSAC 1 cut(s) 122
NruI TCGCGA 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 346
Ppu21I YACGTR 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspPI GGNCC 2 cut(s) 230, 332
PsuI RGATCY 2 cut(s) 68, 307
RruI TCGCGA 1 cut(s) 138
RsaI GTAC 2 cut(s) 75, 567
RsaNI GTAC 2 cut(s) 74, 566
SaqAI TTAA 1 cut(s) 549
Sau3AI GATC 5 cut(s) 68, 174, 307, 385, 443
Sau96I GGNCC 2 cut(s) 230, 332
ScrFI CCNGG 1 cut(s) 348
SetI ASST 9 cut(s) 79, 129, 145, 211, 239, 289, 319, 356, 532
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 2 cut(s) 64, 459
SinI GGWCC 2 cut(s) 230, 332
Sse9I AATT 3 cut(s) 41, 325, 486
SsiI CCGC 1 cut(s) 433
SspMI CTAG 2 cut(s) 423, 468
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 65, 570
TaiI ACGT 2 cut(s) 79, 319
TaqII GACCGA 1 cut(s) 349
TasI AATT 3 cut(s) 41, 325, 486
TatI WGTACW 1 cut(s) 565
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 533
TspRI CASTG 1 cut(s) 502
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 230, 332
XagI CCTNNNNNAGG 1 cut(s) 316
XapI RAATTY 2 cut(s) 41, 325
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 2 cut(s) 423, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.