Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017996

Physical Location & Seq

Genomic Coordinates Forward (+)

27720500 .. 27721443

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38261.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGCCACTACGATATAGGCAGCCAAGTGCATCTGCCATGCATATTTCTCAAGTTCGGAACTTTCACGCGAAATCGGGGACTTTGAATTATCGCGCATCGCCGACTCTGGACGCCGCCCAGTTCGCCGTGGAGGACGGCCAGTACGACGTGTCGTCTAAAGCGAGCGGCGACGAGGGCCTCGAGATTTCGAGGATAGGGATTGATAAGGAGATAGTGTCTGCTTTGGCCAAGAAGGGGATCACTAAGCTTTTCCCCATTCAGAGCTGTGTTGGAGCCAAAAGGGGATGGAATATGACGGAGATAGAAGATTTGAATATGACGGAGGTTCACAAAAACATTGAACAAGATGTAGTGGAACAAATCCTGTCAACTCTGCCTCCCAAATCTCTTATGCGGTTCAAGTACGTTTCTAAAAGGTGGCGTGCTCTGATCACCGATCCCAGGTTTGTGGCTAATGAAGATAGGGCTCCGGTGACACCTCACGGGCGAGGATTTACGAGTAAACTTCTATCATTCAAATCGATACTCGGTTCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

181

Amino Acids

20.09

Weight (kDa)

9.49

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	117 - 150	1.7e-09	F-box domain
F-box-like	PF12937	117 - 149	1.6e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017996)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38261
rosa_multiflora	Rmu_sc0002048.1_g000001 Rmu_sc0002048.1_g000003 Rmu_sc0004976.1_g000001 Rmu_sc0025549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421920
rosa_samantha	Rh2AG511100 Rh2BG521800 Rh2CG496200 Rh2DG531700
rosa_wichuraiana	Rw2G042010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	168
AccII	CGCG	2 cut(s)	71, 96
AciI	CCGC	3 cut(s)	117, 168, 397
AclWI	GGATC	2 cut(s)	248, 434
AcoI	YGGCCR	2 cut(s)	139, 228
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	146, 407
AfiI	CCNNNNNNNGG	2 cut(s)	237, 444
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	5 cut(s)	88, 316, 344, 403, 520
AhdI	GACNNNNNGTC	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	2 cut(s)	250, 267
AluI	AGCT	2 cut(s)	250, 267
Alw21I	GWGCWC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	248, 434
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	139, 178, 228
ApeKI	GCWGC	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	427, 487
AsuII	TTCGAA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	2 cut(s)	113, 154
BciT130I	CCWGG	1 cut(s)	445
BclI	TGATCA	1 cut(s)	432
BisI	GCNGC	3 cut(s)	23, 117, 169
BlsI	GCNGC	3 cut(s)	24, 118, 170
Bme1390I	CCNGG	1 cut(s)	445
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	3 cut(s)	6, 277, 471
BmrFI	CCNGG	1 cut(s)	445
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	41, 107
BmuI	ACTGGG	1 cut(s)	115
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	129, 443
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 444
Bse1I	ACTGG	2 cut(s)	121, 142
BseBI	CCWGG	1 cut(s)	445
BseCI	ATCGAT	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	129, 443
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	2 cut(s)	237, 444
BseNI	ACTGG	2 cut(s)	121, 142
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	2 cut(s)	71, 96
BshFI	GGCC	3 cut(s)	141, 180, 230
BshVI	ATCGAT	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	430
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	237, 444
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	141, 180, 230
BsoBI	CYCGRG	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	430, 472
Bsp143I	GATC	3 cut(s)	240, 432, 439
BspACI	CCGC	3 cut(s)	117, 168, 397
BspANI	GGCC	3 cut(s)	141, 180, 230
BspDI	ATCGAT	1 cut(s)	524
BspFNI	CGCG	2 cut(s)	71, 96
BspLI	GGNNCC	3 cut(s)	6, 277, 471
BspPI	GGATC	2 cut(s)	248, 434
BspT104I	TTCGAA	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	121, 142
BssECI	CCNNGG	2 cut(s)	129, 443
BssMI	GATC	3 cut(s)	240, 432, 439
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	166, 426
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	293
BstFNI	CGCG	2 cut(s)	71, 96
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	3 cut(s)	243, 435, 442
BstMBI	GATC	3 cut(s)	240, 432, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 177
BstNI	CCWGG	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	443
BstUI	CGCG	2 cut(s)	71, 96
BstV1I	GCAGC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	451
Bsu15I	ATCGAT	1 cut(s)	524
BsuRI	GGCC	3 cut(s)	141, 180, 230
BsuTUI	ATCGAT	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	166, 426
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	524
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	145, 406
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	2 cut(s)	145, 406
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	3 cut(s)	242, 434, 441
DpnII	GATC	3 cut(s)	240, 432, 439
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	139, 228
Eam1105I	GACNNNNNGTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	472
FaeI	CATG	1 cut(s)	43
FaiI	YATR	6 cut(s)	18, 41, 45, 296, 320, 395
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	23, 117, 169
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	3 cut(s)	23, 117, 169
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	3 cut(s)	23, 117, 169
HaeIII	GGCC	3 cut(s)	141, 180, 230
HapII	CCGG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	427, 487
Hpy166II	GTNNAC	3 cut(s)	331, 372, 506
Hpy188I	TCNGA	3 cut(s)	60, 264, 432
Hpy188III	TCNNGA	2 cut(s)	110, 184
Hpy8I	GTNNAC	3 cut(s)	331, 372, 506
Hpy99I	CGWCG	2 cut(s)	152, 176
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	150, 408
HpyCH4V	TGCA	2 cut(s)	32, 43
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 177
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	150, 408
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	240, 432, 439
LmnI	GCTCC	3 cut(s)	4, 275, 475
LpnPI	CCDG	7 cut(s)	95, 134, 155, 380, 430, 457, 486
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	41, 107
MaeII	ACGT	2 cut(s)	150, 408
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	3 cut(s)	242, 434, 441
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	3 cut(s)	240, 432, 439
MboII	GAAGA	2 cut(s)	320, 473
MhlI	GDGCHC	2 cut(s)	430, 472
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	8 cut(s)	127, 169, 186, 191, 319, 390, 485, 492
Mox20I	TGGCCA	1 cut(s)	230
Mph1103I	ATGCAT	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	445
MvnI	CGCG	2 cut(s)	71, 96
MwoI	GCNNNNNNNGC	2 cut(s)	125, 177
NdeII	GATC	3 cut(s)	240, 432, 439
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	3 cut(s)	6, 277, 471
NmuCI	GTSAC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 161, 180
PkrI	GCNGC	3 cut(s)	24, 118, 170
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	6, 277, 471
PspPI	GGNCC	1 cut(s)	178
RsaI	GTAC	2 cut(s)	146, 407
RsaNI	GTAC	2 cut(s)	145, 406
SatI	GCNGC	3 cut(s)	23, 117, 169
Sau3AI	GATC	3 cut(s)	240, 432, 439
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	2 cut(s)	430, 472
SetI	ASST	8 cut(s)	153, 252, 269, 330, 411, 422, 449, 484
SfaNI	GCATC	2 cut(s)	41, 107
Sfr274I	CTCGAG	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	51, 182
SmoI	CTYRAG	2 cut(s)	51, 182
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	3 cut(s)	117, 168, 397
StyD4I	CCNGG	1 cut(s)	443
TaiI	ACGT	2 cut(s)	153, 411
TaqI	TCGA	4 cut(s)	183, 191, 524, 536
TasI	AATT	1 cut(s)	88
TauI	GCSGC	2 cut(s)	119, 171
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	474
TspGWI	ACGGA	2 cut(s)	314, 338
XhoI	CTCGAG	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.