Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017996

Physical Location & Seq

Genomic Coordinates Reverse (-)

73227430 .. 73229147

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG521800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATAAGCATCATGCTCCGACGGACACCCCGGATGGCGCGCAACGCGCAACCTCGCCGCCATCGAAACCCTCCTCATAAACCGCCTTTCCTTCCCTCCAACGCCGTCATCCCCGGCCAACTGATTCCGACCACAGGTGACGTCGGCGTCGGCGGTGAGGCTAAGACCTCCCACGGGTTTCAAGTTAGGAACTTCCAATCGAAATTGGTGCCTTTGAATTTTCGTGCATCGCCAACTTTGTTGAGCACCGCCCAGTTCGCCGAGATTGTATCTTCTTTGGCCAAGAAGGAGATCACTAAGCTTTTTCCCATTCAGAGAGCTGTGTTGGATCCAGCAATGCAAGGGCGTGATATGATTGGTCGTGCTAGAACTGGAACTGGGAAAACTCTTGCATTTGGGATTCCCATATTGGATAAAATCATTCAATTCAATGCCAAACATGGGCGTGGGAGGAATCCTTTGGCTTTGGTGTTGGCTCCGACGAGAGAACTTGCAAAGCAAGTTGACAAGGAATTCTATGAGGCAGCACCGCGTTTGAATACGATTTGTGTTTGTGGTGGTACACCCATTGGAAGGCAGATGGGCCAGCTTGACCATGGTGTTGATGTGGCGGTTGGCACACCTGGTCGTGTTATTGATCTCCTTAAGGGGGGTGCTTTGAATCTATCGGAAGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGATTTCAGGAGGATGTGGAGATAATCTTGGAGAGGTTACTAAAGAAACGTCAGACGTTGATGTTCTCTGCAACAATGCCTACGTGGATCAAAAATCTCACTAGGAATTACCTAAAGGATCCAGCAGTTATCGATCTTGTTGGGGAGTCTGATCAGAAATTAGCAGATGGAATTTCCCTATACTCGATTGCTGCAGATTCATATGGAAAAGCATCAATTATTGGACCACTGATAACAGAACATGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

322

Amino Acids

35.2

Weight (kDa)

9.82

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	103 - 271	1e-44	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017996)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38261
rosa_multiflora	Rmu_sc0002048.1_g000001 Rmu_sc0002048.1_g000003 Rmu_sc0004976.1_g000001 Rmu_sc0025549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421920
rosa_samantha	Rh2AG511100 Rh2BG521800 Rh2CG496200 Rh2DG531700
rosa_wichuraiana	Rw2G042010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	208
AccII	CGCG	3 cut(s)	40, 47, 532
AciI	CCGC	6 cut(s)	58, 83, 153, 249, 530, 611
AclWI	GGATC	5 cut(s)	323, 336, 812, 830, 843
AcoI	YGGCCR	2 cut(s)	115, 279
AcsI	RAATTY	3 cut(s)	217, 512, 888
AcyI	GRCGYC	2 cut(s)	141, 147
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	5 cut(s)	134, 174, 441, 573, 649
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	7 cut(s)	182, 217, 425, 430, 538, 661, 713
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	4 cut(s)	301, 320, 589, 698
AluI	AGCT	4 cut(s)	301, 320, 589, 698
Alw21I	GWGCWC	1 cut(s)	248
AlwI	GGATC	5 cut(s)	323, 336, 812, 830, 843
AoxI	GGCC	3 cut(s)	115, 279, 583
ApeKI	GCWGC	2 cut(s)	524, 908
ApoI	RAATTY	3 cut(s)	217, 512, 888
AspLEI	GCGC	3 cut(s)	40, 42, 49
AspS9I	GGNCC	2 cut(s)	583, 941
AsuC2I	CCSGG	2 cut(s)	31, 114
AsuHPI	GGTGA	2 cut(s)	149, 167
AvaII	GGWCC	1 cut(s)	941
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	2 cut(s)	328, 835
BanI	GGYRCC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	536, 895
BccI	CCATC	4 cut(s)	28, 69, 574, 878
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	624
BclI	TGATCA	2 cut(s)	700, 868
BcnI	CCSGG	2 cut(s)	31, 114
BfaI	CTAG	2 cut(s)	366, 819
BfmI	CTRYAG	1 cut(s)	909
BfrI	CTTAAG	1 cut(s)	644
BisI	GCNGC	3 cut(s)	58, 525, 909
BlsI	GCNGC	3 cut(s)	59, 526, 910
Bme1390I	CCNGG	3 cut(s)	31, 114, 624
Bme18I	GGWCC	1 cut(s)	941
BmgT120I	GGNCC	2 cut(s)	583, 941
BmiI	GGNNCC	4 cut(s)	210, 330, 477, 837
BmrFI	CCNGG	3 cut(s)	31, 114, 624
BmrI	ACTGGG	2 cut(s)	247, 387
BmsI	GCATC	4 cut(s)	18, 236, 696, 938
BmuI	ACTGGG	2 cut(s)	247, 387
BpuMI	CCSGG	2 cut(s)	31, 114
Bsa29I	ATCGAT	1 cut(s)	849
BsaAI	YACGTR	1 cut(s)	801
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	141, 147
BsaJI	CCNNGG	4 cut(s)	29, 112, 172, 595
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 174, 441, 573, 649
Bse1I	ACTGG	3 cut(s)	253, 376, 382
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	624
BseCI	ATCGAT	1 cut(s)	849
BseDI	CCNNGG	4 cut(s)	29, 112, 172, 595
BseGI	GGATG	3 cut(s)	39, 108, 736
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	5 cut(s)	134, 174, 441, 573, 649
BseMI	GCAATG	1 cut(s)	342
BseNI	ACTGG	3 cut(s)	253, 376, 382
BsePI	GCGCGC	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	536, 895
Bsh1236I	CGCG	3 cut(s)	40, 47, 532
BshFI	GGCC	3 cut(s)	117, 281, 585
BshNI	GGYRCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	849
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	31, 114
BslI	CCNNNNNNNGG	5 cut(s)	134, 174, 441, 573, 649
BsnI	GGCC	3 cut(s)	117, 281, 585
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	8 cut(s)	291, 328, 637, 700, 804, 835, 850, 868
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	6 cut(s)	58, 83, 153, 249, 530, 611
BspANI	GGCC	3 cut(s)	117, 281, 585
BspDI	ATCGAT	1 cut(s)	849
BspFNI	CGCG	3 cut(s)	40, 47, 532
BspLI	GGNNCC	4 cut(s)	210, 330, 477, 837
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	5 cut(s)	323, 336, 812, 830, 843
BspT107I	GGYRCC	1 cut(s)	208
BspTI	CTTAAG	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	253, 376, 382
BssECI	CCNNGG	4 cut(s)	29, 112, 172, 595
BssHII	GCGCGC	1 cut(s)	38
BssMI	GATC	8 cut(s)	291, 328, 637, 700, 804, 835, 850, 868
BssNI	GRCGYC	2 cut(s)	141, 147
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	624
BstACI	GRCGYC	2 cut(s)	141, 147
BstAFI	CTTAAG	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	40, 587
BstDEI	CTNAG	2 cut(s)	162, 297
BstDSI	CCRYGG	2 cut(s)	172, 595
BstF5I	GGATG	3 cut(s)	39, 108, 736
BstFNI	CGCG	3 cut(s)	40, 47, 532
BstHHI	GCGC	3 cut(s)	40, 42, 49
BstKTI	GATC	8 cut(s)	294, 331, 640, 703, 807, 838, 853, 871
BstMBI	GATC	8 cut(s)	291, 328, 637, 700, 804, 835, 850, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 46, 257
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	962
BstSCI	CCNGG	3 cut(s)	29, 112, 622
BstSFI	CTRYAG	1 cut(s)	909
BstUI	CGCG	3 cut(s)	40, 47, 532
BstV1I	GCAGC	2 cut(s)	536, 895
BstX2I	RGATCY	2 cut(s)	328, 835
BstYI	RGATCY	2 cut(s)	328, 835
Bsu15I	ATCGAT	1 cut(s)	849
BsuRI	GGCC	3 cut(s)	117, 281, 585
BsuTUI	ATCGAT	1 cut(s)	849
BtgI	CCRYGG	2 cut(s)	172, 595
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	39, 108, 736
BtsIMutI	CAGTG	1 cut(s)	944
Cac8I	GCNNGC	2 cut(s)	40, 587
CfoI	GCGC	3 cut(s)	40, 42, 49
Cfr13I	GGNCC	2 cut(s)	583, 941
ClaI	ATCGAT	1 cut(s)	849
CseI	GACGC	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	4 cut(s)	13, 440, 596, 959
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	162, 297
DpnI	GATC	8 cut(s)	293, 330, 639, 702, 806, 837, 852, 870
DpnII	GATC	8 cut(s)	291, 328, 637, 700, 804, 835, 850, 868
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	115, 279
Eco130I	CCWWGG	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	4 cut(s)	16, 443, 599, 962
FatI	CATG	4 cut(s)	12, 439, 595, 958
FauNDI	CATATG	1 cut(s)	919
FbaI	TGATCA	2 cut(s)	700, 868
Fnu4HI	GCNGC	3 cut(s)	58, 525, 909
FokI	GGATG	3 cut(s)	46, 95, 743
Fsp4HI	GCNGC	3 cut(s)	58, 525, 909
FspBI	CTAG	2 cut(s)	366, 819
GlaI	GCGC	3 cut(s)	39, 41, 48
GluI	GCNGC	3 cut(s)	58, 525, 909
HaeIII	GGCC	3 cut(s)	117, 281, 585
HapII	CCGG	2 cut(s)	31, 114
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	3 cut(s)	40, 42, 49
Hin1I	GRCGYC	2 cut(s)	141, 147
Hin1II	CATG	4 cut(s)	16, 443, 599, 962
Hin6I	GCGC	3 cut(s)	38, 40, 47
HinP1I	GCGC	3 cut(s)	38, 40, 47
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	6 cut(s)	124, 400, 454, 661, 863, 914
HpaII	CCGG	2 cut(s)	31, 114
HphI	GGTGA	2 cut(s)	149, 167
Hpy166II	GTNNAC	2 cut(s)	505, 563
Hpy188I	TCNGA	9 cut(s)	20, 129, 315, 480, 670, 705, 771, 868, 873
Hpy188III	TCNNGA	2 cut(s)	689, 725
Hpy8I	GTNNAC	2 cut(s)	505, 563
Hpy99I	CGWCG	4 cut(s)	24, 146, 152, 484
HpyAV	CCTTC	3 cut(s)	101, 280, 567
HpyCH4IV	ACGT	4 cut(s)	141, 766, 773, 800
HpyCH4V	TGCA	7 cut(s)	227, 340, 392, 494, 788, 911, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 46, 257
HpyF3I	CTNAG	2 cut(s)	162, 297
HpySE526I	ACGT	4 cut(s)	141, 766, 773, 800
Hsp92I	GRCGYC	2 cut(s)	141, 147
Hsp92II	CATG	4 cut(s)	16, 443, 599, 962
HspAI	GCGC	3 cut(s)	38, 40, 47
Ksp22I	TGATCA	2 cut(s)	700, 868
Kzo9I	GATC	8 cut(s)	291, 328, 637, 700, 804, 835, 850, 868
LmnI	GCTCC	2 cut(s)	21, 481
Lsp1109I	GCAGC	2 cut(s)	536, 895
LweI	GCATC	4 cut(s)	18, 236, 696, 938
MabI	ACCWGGT	1 cut(s)	622
MaeI	CTAG	2 cut(s)	366, 819
MaeII	ACGT	4 cut(s)	141, 766, 773, 800
MaeIII	GTNAC	2 cut(s)	137, 753
MalI	GATC	8 cut(s)	293, 330, 639, 702, 806, 837, 852, 870
MboI	GATC	8 cut(s)	291, 328, 637, 700, 804, 835, 850, 868
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	2 cut(s)	328, 835
MhlI	GDGCHC	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	8 cut(s)	203, 217, 425, 512, 823, 875, 888, 933
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	872
MmeI	TCCRAC	5 cut(s)	43, 123, 152, 306, 503
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	2 cut(s)	31, 114
MspR9I	CCNGG	3 cut(s)	31, 114, 624
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	3 cut(s)	40, 47, 532
MwoI	GCNNNNNNNGC	3 cut(s)	44, 46, 257
NciI	CCSGG	2 cut(s)	31, 114
NcoI	CCATGG	1 cut(s)	595
NdeI	CATATG	1 cut(s)	919
NdeII	GATC	8 cut(s)	291, 328, 637, 700, 804, 835, 850, 868
NlaIII	CATG	4 cut(s)	16, 443, 599, 962
NlaIV	GGNNCC	4 cut(s)	210, 330, 477, 837
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	962
PauI	GCGCGC	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PfeI	GAWTC	5 cut(s)	124, 400, 454, 661, 914
PkrI	GCNGC	3 cut(s)	59, 526, 910
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
Ppu21I	YACGTR	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	4 cut(s)	210, 330, 477, 837
PspPI	GGNCC	2 cut(s)	583, 941
PstI	CTGCAG	1 cut(s)	913
PsuI	RGATCY	2 cut(s)	328, 835
PteI	GCGCGC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	3 cut(s)	58, 525, 909
Sau3AI	GATC	8 cut(s)	291, 328, 637, 700, 804, 835, 850, 868
Sau96I	GGNCC	2 cut(s)	583, 941
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	3 cut(s)	31, 114, 624
SduI	GDGCHC	1 cut(s)	248
SexAI	ACCWGGT	1 cut(s)	622
SfaNI	GCATC	4 cut(s)	18, 236, 696, 938
SfcI	CTRYAG	1 cut(s)	909
SinI	GGWCC	1 cut(s)	941
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	8 cut(s)	203, 217, 425, 512, 823, 875, 888, 933
SsiI	CCGC	6 cut(s)	58, 83, 153, 249, 530, 611
SspMI	CTAG	2 cut(s)	366, 819
StyD4I	CCNGG	3 cut(s)	29, 112, 622
StyI	CCWWGG	1 cut(s)	595
TaiI	ACGT	4 cut(s)	144, 769, 776, 803
TaqI	TCGA	4 cut(s)	64, 200, 849, 902
TasI	AATT	8 cut(s)	203, 217, 425, 512, 823, 875, 888, 933
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	5 cut(s)	124, 400, 454, 661, 914
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	1 cut(s)	951
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	524, 908
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	708, 906
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	951
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	941
XapI	RAATTY	3 cut(s)	217, 512, 888
XceI	RCATGY	1 cut(s)	962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XspI	CTAG	2 cut(s)	366, 819
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.