Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025549.1

Orthogroup ID

OG0017996

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 590

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025549.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 451 bp

atgatgagtatcgtgctccggaggtcacccacaatatccgcgacgcgggccgtcgccgccatcgaaaacctactgatcaaccgcctctcatttcccgccacgtcatcacccgcacttccgggaaacggtgatctcggcggcggtgaggctaagccagggtttcaagttcgggactttcacgttaaatctgggccgttgaatttccgggcatcgccgacgactttgttcggcgcccaggtggctttggacgaggactacgacgagtcgtctaaatcgagcgcggaagatggacttgagatttcgaggctagggattgataaggagattgtgtctgctttggccaagaaggggatcaccaaactcttccccattcagagagctgtgttggaaccagcaatgcaagggcgtgatatgattggtcgtgctagaactggaaccgggaaaactcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

150

Amino Acids

15.91

Weight (kDa)

9.45

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017996)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38261
rosa_multiflora	Rmu_sc0002048.1_g000001 Rmu_sc0002048.1_g000003 Rmu_sc0004976.1_g000001 Rmu_sc0025549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421920
rosa_samantha	Rh2AG511100 Rh2BG521800 Rh2CG496200 Rh2DG531700
rosa_wichuraiana	Rw2G042010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	3 cut(s)	41, 46, 281
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	9 cut(s)	39, 46, 57, 82, 96, 111, 138, 141, 281
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	3 cut(s)	45, 125, 348
AgsI	TTSAA	2 cut(s)	164, 199
AhdI	GACNNNNNGTC	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	2 cut(s)	154, 234
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	3 cut(s)	48, 191, 339
ApoI	RAATTY	1 cut(s)	199
AspLEI	GCGC	2 cut(s)	233, 281
AspS9I	GGNCC	2 cut(s)	48, 191
AsuC2I	CCSGG	3 cut(s)	120, 206, 439
AsuHPI	GGTGA	5 cut(s)	18, 99, 140, 155, 346
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	2 cut(s)	68, 281
BceAI	ACGGC	2 cut(s)	35, 178
BciT130I	CCWGG	2 cut(s)	156, 236
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	3 cut(s)	120, 206, 439
BfaI	CTAG	2 cut(s)	308, 426
BfoI	RGCGCY	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	2 cut(s)	57, 139
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	2 cut(s)	58, 140
Bme1390I	CCNGG	5 cut(s)	120, 156, 206, 236, 439
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	48, 191
BmiI	GGNNCC	3 cut(s)	232, 390, 436
BmrFI	CCNGG	5 cut(s)	120, 156, 206, 236, 439
BmsI	GCATC	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	3 cut(s)	120, 206, 439
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	155, 234
BsaWI	WCCGGW	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 125, 348
Bse1I	ACTGG	1 cut(s)	436
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	156, 236
BseDI	CCNNGG	2 cut(s)	155, 234
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	45, 125, 348
BseMI	GCAATG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	436
Bsh1236I	CGCG	3 cut(s)	41, 46, 281
BshFI	GGCC	3 cut(s)	50, 193, 341
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	4 cut(s)	19, 119, 205, 438
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	45, 125, 348
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	50, 193, 341
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	75, 130, 351
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	9 cut(s)	39, 46, 57, 82, 96, 111, 138, 141, 281
BspANI	GGCC	3 cut(s)	50, 193, 341
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	3 cut(s)	41, 46, 281
BspLI	GGNNCC	3 cut(s)	232, 390, 436
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	155, 234
BssMI	GATC	3 cut(s)	75, 130, 351
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	156, 236
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	24
BstFNI	CGCG	3 cut(s)	41, 46, 281
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	233, 281
BstKTI	GATC	3 cut(s)	78, 133, 354
BstMBI	GATC	3 cut(s)	75, 130, 351
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 239
BstNI	CCWGG	2 cut(s)	156, 236
BstPI	GGTNACC	1 cut(s)	24
BstSCI	CCNGG	5 cut(s)	118, 154, 204, 234, 437
BstUI	CGCG	3 cut(s)	41, 46, 281
BsuRI	GGCC	3 cut(s)	50, 193, 341
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	2 cut(s)	233, 281
Cfr13I	GGNCC	2 cut(s)	48, 191
CseI	GACGC	1 cut(s)	52
CviJI	RGCY	8 cut(s)	50, 149, 154, 193, 242, 307, 341, 380
CviKI_1	RGCY	8 cut(s)	50, 149, 154, 193, 242, 307, 341, 380
DdeI	CTNAG	1 cut(s)	150
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	3 cut(s)	77, 132, 353
DpnII	GATC	3 cut(s)	75, 130, 351
DriI	GACNNNNNGTC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	368
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	368
Eco91I	GGTNACC	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	154, 234
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaiI	YATR	1 cut(s)	413
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	185
FauI	CCCGC	3 cut(s)	39, 103, 118
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	57, 139
Fsp4HI	GCNGC	2 cut(s)	57, 139
FspBI	CTAG	2 cut(s)	308, 426
GlaI	GCGC	2 cut(s)	232, 280
GluI	GCNGC	2 cut(s)	57, 139
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	50, 193, 341
HapII	CCGG	4 cut(s)	19, 119, 205, 438
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	233, 281
Hin1I	GRCGYC	1 cut(s)	231
Hin6I	GCGC	2 cut(s)	231, 279
HinP1I	GCGC	2 cut(s)	231, 279
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	4 cut(s)	19, 119, 205, 438
HphI	GGTGA	5 cut(s)	18, 99, 140, 155, 346
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	2 cut(s)	19, 170
Hpy99I	CGWCG	4 cut(s)	46, 56, 220, 263
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	2 cut(s)	101, 180
HpyCH4V	TGCA	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 239
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	101, 180
Hsp92I	GRCGYC	1 cut(s)	231
HspAI	GCGC	2 cut(s)	231, 279
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	75, 130, 351
LmnI	GCTCC	1 cut(s)	21
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	2 cut(s)	308, 426
MaeII	ACGT	2 cut(s)	101, 180
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	3 cut(s)	77, 132, 353
MboI	GATC	3 cut(s)	75, 130, 351
MboII	GAAGA	2 cut(s)	296, 355
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	1 cut(s)	199
MluNI	TGGCCA	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	5 cut(s)	15, 95, 139, 244, 297
Mox20I	TGGCCA	1 cut(s)	341
MroI	TCCGGA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	4 cut(s)	19, 119, 205, 438
MspR9I	CCNGG	5 cut(s)	120, 156, 206, 236, 439
MvaI	CCWGG	2 cut(s)	156, 236
MvnI	CGCG	3 cut(s)	41, 46, 281
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 239
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	3 cut(s)	120, 206, 439
NdeII	GATC	3 cut(s)	75, 130, 351
NlaIV	GGNNCC	3 cut(s)	232, 390, 436
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 255, 272
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	58, 140
PleI	GAGTC	1 cut(s)	271
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	154, 234
PspEI	GGTNACC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	154, 234
PspN4I	GGNNCC	3 cut(s)	232, 390, 436
PspPI	GGNCC	2 cut(s)	48, 191
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	57, 139
Sau3AI	GATC	3 cut(s)	75, 130, 351
Sau96I	GGNCC	2 cut(s)	48, 191
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	5 cut(s)	120, 156, 206, 236, 439
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	6 cut(s)	26, 72, 104, 183, 240, 382
SfaNI	GCATC	1 cut(s)	218
SfoI	GGCGCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	9 cut(s)	39, 46, 57, 82, 96, 111, 138, 141, 281
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	308, 426
StyD4I	CCNGG	5 cut(s)	118, 154, 204, 234, 437
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	2 cut(s)	104, 183
TaqI	TCGA	3 cut(s)	63, 275, 302
TasI	AATT	1 cut(s)	199
TauI	GCSGC	2 cut(s)	59, 141
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	199
XspI	CTAG	2 cut(s)	308, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.