Rw2G042010

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
68226257 .. 68230063
3807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042010.1

Sequence Viewer

Length: 1488 bp
ATGGCGCGCAACGCGCCACCTCGCCGCCATCGAAACCCTCCTCATAACCGCCTCTCCTTCCCTCCAACGCCGTCATCCGGCCAACTGATTCCGACCACAGGTGACGTCGGCGTCGGCGGTGAGGCTAAGACCTCCCACGGGTTTCAAGTTAGGAACTTCCAATCGAAATTGGTGCCTTTGAATTATCGTGCATCGCCAACTTTGTTGAGCACCGCCCAGTTCGCCGTGGAGGACGGCCAGTCCGACGAGTCGTCTAAAAAGAGCGGCGACGATGGCCTCGAGATTGATCAGGAGATTGTATCTGCTTTGGCCAAGAAGGGGATCACTAAGCCTTTTCCCATTCAGAGAGATGTGTTGGAACCAGCAATGCAAGGGCGTGATATGATTGGTCGTGCTAGAACTGGAACTGGGAAAACTCTTGCATTTGGGATTCCCATATTGGATAAAATCATTCAATTCAATGCCAAACATGGGCGTGGGAGGAATCCTTTGGCTTTGGTGTTGGCTCCGACGAGAGAACTTGCAAAGCAAGTTGACAAGGACTTCTATGAGGCAGCACCGAGTTTGAATACGATTTGTGTTTGTGGTGGTACACCCATTGGAAGGCAGATGGGCCAGCTTGACCATGGTGTTGATGTGGCGGTTGGCACACCTGGTCGTGTTATTGATCTCCTTAAGGGGGGTGCTTTGAATCTATCGGAAGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGATTTCAGGAGGATGTGGAGATAATCTTGGAGAGGTTACTAAAGAAACGTCAGACGTTGATGTTCTCTGCAACAATGCCTACGTGGATCAAAAATCTCACTAGGAATTACCTAAAGGATCCAGCAGTTATCGATCTTGTTGGGGAGTCTGATCAGAAATTGGCAGATGGAATTTCCCTATACTCGATTGCTGCAGATTCATATGGAAAAGCATCAATTATTGGACCACTGATAACATTTTTCTATTTGCATATGTTTGAGAAAGTTCATCAATTCTTGGTCATACGCTTCCCTGTGATCTATTTGCTGGAGATCTTTCCTGTGGAAAATGCCTACTGGGAATTGCCCTTCCAAGTTACATACTTGAAGACGGAGAGATATGAGAGAGGACACATTCACCAACGTATTAGGCACTGTGGAGCCTATCTCTGCCCAACTAAGATGAAGTTGTTTTATGTTGGTCAAGTTCTGAACTGGGCTTCCGAAGTTGGACATTTTAAGATGAGACTCAAAAATAGAAGACAGATCAGATCAAGGGCAGACAGCTTGGATAGATATGAAATTTCTGATGGAATTTGGCCAGAAAATGAAGATATTGAAAGAGAGGAGGTCAAGCCTCTGCAACTGAACAAGTTGAAAAAGACTGCTATTGGAGTTGATGGAACCATGAAGATAGCTGCTGGCGAGATCAAGGCCAATAACATGGCCAGAGTCGTGGTTGCATTCAACACCATCCCATGA

Protein Analysis

495

Amino Acids

55.27

Weight (kDa)

9.09

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 113 - 281 3.8e-44 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AatII GACGTC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 264
AccII CGCG 2 cut(s) 7, 14
AciI CCGC 6 cut(s) 25, 49, 117, 213, 264, 641
AclWI GGATC 4 cut(s) 329, 842, 860, 873
AcoI YGGCCR 5 cut(s) 79, 235, 309, 1325, 1452
AcsI RAATTY 3 cut(s) 918, 1308, 1320
AcyI GRCGYC 2 cut(s) 105, 111
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 7 cut(s) 77, 98, 138, 318, 471, 603, 679
AflII CTTAAG 1 cut(s) 674
AhdI GACNNNNNGTC 2 cut(s) 238, 250
AjnI CCWGG 1 cut(s) 652
AloI GAACNNNNNNTCC 2 cut(s) 1211, 1243
AluBI AGCT 4 cut(s) 619, 728, 1293, 1424
AluI AGCT 4 cut(s) 619, 728, 1293, 1424
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 1246
AlwI GGATC 4 cut(s) 329, 842, 860, 873
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 8 cut(s) 79, 235, 274, 309, 613, 1325, 1440, 1452
ApeKI GCWGC 3 cut(s) 554, 938, 1424
ApoI RAATTY 3 cut(s) 918, 1308, 1320
AspLEI GCGC 3 cut(s) 7, 9, 16
AspS9I GGNCC 2 cut(s) 613, 971
AsuHPI GGTGA 3 cut(s) 113, 131, 1136
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 971
BalI TGGCCA 3 cut(s) 311, 1327, 1454
BamHI GGATCC 1 cut(s) 865
BanI GGYRCC 1 cut(s) 172
BbsI GAAGAC 2 cut(s) 1121, 1273
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 566, 925, 1411
BccI CCATC 7 cut(s) 36, 266, 604, 908, 1310, 1400, 1487
BceAI ACGGC 3 cut(s) 55, 209, 250
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 1 cut(s) 654
BclI TGATCA 3 cut(s) 286, 730, 898
BcoDI GTCTC 1 cut(s) 1246
BfaI CTAG 2 cut(s) 396, 849
BfmI CTRYAG 1 cut(s) 939
BfrI CTTAAG 1 cut(s) 674
BglII AGATCT 1 cut(s) 1059
BisI GCNGC 5 cut(s) 25, 265, 555, 939, 1425
BlsI GCNGC 5 cut(s) 26, 266, 556, 940, 1426
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 971
BmeRI GACNNNNNGTC 2 cut(s) 238, 250
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 613, 971
BmiI GGNNCC 6 cut(s) 174, 360, 507, 867, 1168, 1411
BmrFI CCNGG 1 cut(s) 654
BmrI ACTGGG 4 cut(s) 211, 417, 1093, 1231
BmsI GCATC 3 cut(s) 200, 726, 968
BmuI ACTGGG 4 cut(s) 211, 417, 1093, 1231
BpiI GAAGAC 2 cut(s) 1121, 1273
BplI GAGNNNNNCTC 2 cut(s) 1158, 1190
BpmI CTGGAG 1 cut(s) 1076
Bsa29I ATCGAT 1 cut(s) 879
BsaAI YACGTR 1 cut(s) 831
BsaHI GRCGYC 2 cut(s) 105, 111
BsaJI CCNNGG 3 cut(s) 136, 225, 625
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 7 cut(s) 77, 98, 138, 318, 471, 603, 679
Bse1I ACTGG 6 cut(s) 217, 238, 406, 412, 1088, 1226
Bse3DI GCAATG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 654
BseCI ATCGAT 1 cut(s) 879
BseDI CCNNGG 3 cut(s) 136, 225, 625
BseGI GGATG 3 cut(s) 74, 766, 1479
BseLI CCNNNNNNNGG 7 cut(s) 77, 98, 138, 318, 471, 603, 679
BseMI GCAATG 1 cut(s) 372
BseNI ACTGG 6 cut(s) 217, 238, 406, 412, 1088, 1226
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 2 cut(s) 30, 1367
BseXI GCAGC 3 cut(s) 566, 925, 1411
Bsh1236I CGCG 2 cut(s) 7, 14
BshFI GGCC 8 cut(s) 81, 237, 276, 311, 615, 1327, 1442, 1454
BshNI GGYRCC 1 cut(s) 172
BshVI ATCGAT 1 cut(s) 879
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 7 cut(s) 77, 98, 138, 318, 471, 603, 679
BsmAI GTCTC 1 cut(s) 1246
BsmI GAATGC 1 cut(s) 1469
BsnI GGCC 8 cut(s) 81, 237, 276, 311, 615, 1327, 1442, 1454
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 212
Bsp19I CCATGG 1 cut(s) 625
BspACI CCGC 6 cut(s) 25, 49, 117, 213, 264, 641
BspANI GGCC 8 cut(s) 81, 237, 276, 311, 615, 1327, 1442, 1454
BspDI ATCGAT 1 cut(s) 879
BspFNI CGCG 2 cut(s) 7, 14
BspLI GGNNCC 6 cut(s) 174, 360, 507, 867, 1168, 1411
BspMAI CTGCAG 1 cut(s) 943
BspPI GGATC 4 cut(s) 329, 842, 860, 873
BspT107I GGYRCC 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 674
BsrBI CCGCTC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 6 cut(s) 217, 238, 406, 412, 1088, 1226
BssECI CCNNGG 3 cut(s) 136, 225, 625
BssHII GCGCGC 1 cut(s) 5
BssNI GRCGYC 2 cut(s) 105, 111
BssT1I CCWWGG 1 cut(s) 625
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 1163
BstACI GRCGYC 2 cut(s) 105, 111
BstAFI CTTAAG 1 cut(s) 674
BstBAI YACGTR 1 cut(s) 831
BstC8I GCNNGC 3 cut(s) 7, 617, 1429
BstDEI CTNAG 3 cut(s) 126, 327, 1185
BstDSI CCRYGG 3 cut(s) 136, 225, 625
BstF5I GGATG 3 cut(s) 74, 766, 1479
BstFNI CGCG 2 cut(s) 7, 14
BstHHI GCGC 3 cut(s) 7, 9, 16
BstMAI GTCTC 1 cut(s) 1246
BstMWI GCNNNNNNNGC 4 cut(s) 11, 13, 221, 273
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 939
BstUI CGCG 2 cut(s) 7, 14
BstV1I GCAGC 3 cut(s) 566, 925, 1411
BstV2I GAAGAC 2 cut(s) 1121, 1273
BstX2I RGATCY 2 cut(s) 865, 1059
BstXI CCANNNNNNTGG 2 cut(s) 1450, 1462
BstYI RGATCY 2 cut(s) 865, 1059
Bsu15I ATCGAT 1 cut(s) 879
BsuRI GGCC 8 cut(s) 81, 237, 276, 311, 615, 1327, 1442, 1454
BsuTUI ATCGAT 1 cut(s) 879
BtgI CCRYGG 3 cut(s) 136, 225, 625
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 74, 766, 1479
BtsIMutI CAGTG 2 cut(s) 974, 1159
Cac8I GCNNGC 3 cut(s) 7, 617, 1429
CfoI GCGC 3 cut(s) 7, 9, 16
Cfr13I GGNCC 2 cut(s) 613, 971
ClaI ATCGAT 1 cut(s) 879
CseI GACGC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 1 cut(s) 591
CviAII CATG 5 cut(s) 470, 626, 1414, 1450, 1485
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 3 cut(s) 126, 327, 1185
DrdI GACNNNNNNGTC 1 cut(s) 110
DriI GACNNNNNGTC 2 cut(s) 238, 250
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 5 cut(s) 79, 235, 309, 1325, 1452
Eam1105I GACNNNNNGTC 2 cut(s) 238, 250
Eco130I CCWWGG 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 971
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 625
FaeI CATG 5 cut(s) 473, 629, 1417, 1453, 1488
FatI CATG 5 cut(s) 469, 625, 1413, 1449, 1484
FauNDI CATATG 2 cut(s) 949, 999
FbaI TGATCA 3 cut(s) 286, 730, 898
Fnu4HI GCNGC 5 cut(s) 25, 265, 555, 939, 1425
FokI GGATG 3 cut(s) 61, 773, 1466
Fsp4HI GCNGC 5 cut(s) 25, 265, 555, 939, 1425
FspBI CTAG 2 cut(s) 396, 849
GlaI GCGC 3 cut(s) 6, 8, 15
GluI GCNGC 5 cut(s) 25, 265, 555, 939, 1425
GsuI CTGGAG 1 cut(s) 1076
HaeIII GGCC 8 cut(s) 81, 237, 276, 311, 615, 1327, 1442, 1454
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 100
HhaI GCGC 3 cut(s) 7, 9, 16
Hin1I GRCGYC 2 cut(s) 105, 111
Hin1II CATG 5 cut(s) 473, 629, 1417, 1453, 1488
Hin6I GCGC 3 cut(s) 5, 7, 14
HinP1I GCGC 3 cut(s) 5, 7, 14
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 9 cut(s) 88, 248, 430, 484, 691, 893, 944, 1254, 1458
HpaII CCGG 1 cut(s) 78
HphI GGTGA 3 cut(s) 113, 131, 1136
Hpy166II GTNNAC 2 cut(s) 535, 593
Hpy188III TCNNGA 4 cut(s) 280, 290, 719, 755
Hpy8I GTNNAC 2 cut(s) 535, 593
Hpy99I CGWCG 5 cut(s) 110, 116, 248, 272, 514
HpyAV CCTTC 4 cut(s) 67, 310, 597, 1105
HpyCH4III ACNGT 1 cut(s) 1163
HpyCH4IV ACGT 5 cut(s) 105, 796, 803, 830, 1150
HpyCH4V TGCA 9 cut(s) 191, 370, 422, 524, 818, 941, 997, 1369, 1469
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 13, 221, 273
HpyF3I CTNAG 3 cut(s) 126, 327, 1185
HpySE526I ACGT 5 cut(s) 105, 796, 803, 830, 1150
Hsp92I GRCGYC 2 cut(s) 105, 111
Hsp92II CATG 5 cut(s) 473, 629, 1417, 1453, 1488
HspAI GCGC 3 cut(s) 5, 7, 14
Ksp22I TGATCA 3 cut(s) 286, 730, 898
LmnI GCTCC 2 cut(s) 511, 1166
Lsp1109I GCAGC 3 cut(s) 566, 925, 1411
LweI GCATC 3 cut(s) 200, 726, 968
MabI ACCWGGT 1 cut(s) 652
MaeI CTAG 2 cut(s) 396, 849
MaeII ACGT 5 cut(s) 105, 796, 803, 830, 1150
MaeIII GTNAC 3 cut(s) 101, 783, 1102
MbiI CCGCTC 1 cut(s) 264
MboII GAAGA 4 cut(s) 1126, 1278, 1349, 1429
MflI RGATCY 2 cut(s) 865, 1059
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 3 cut(s) 311, 1327, 1454
MluNI TGGCCA 3 cut(s) 311, 1327, 1454
MlyI GAGTC 4 cut(s) 257, 902, 1248, 1467
MmeI TCCRAC 6 cut(s) 89, 116, 267, 336, 533, 1216
Mox20I TGGCCA 3 cut(s) 311, 1327, 1454
MscI TGGCCA 3 cut(s) 311, 1327, 1454
MseI TTAA 2 cut(s) 675, 1245
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 3 cut(s) 311, 1327, 1454
MspCI CTTAAG 1 cut(s) 674
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 1469
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 2 cut(s) 7, 14
MwoI GCNNNNNNNGC 4 cut(s) 11, 13, 221, 273
NcoI CCATGG 1 cut(s) 625
NdeI CATATG 2 cut(s) 949, 999
NlaIII CATG 5 cut(s) 473, 629, 1417, 1453, 1488
NlaIV GGNNCC 6 cut(s) 174, 360, 507, 867, 1168, 1411
NmuCI GTSAC 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 278
PauI GCGCGC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 3 cut(s) 28, 240, 276
PctI GAATGC 1 cut(s) 1469
PfeI GAWTC 5 cut(s) 88, 430, 484, 691, 944
PkrI GCNGC 5 cut(s) 26, 266, 556, 940, 1426
PleI GAGTC 4 cut(s) 256, 901, 1248, 1466
PpsI GAGTC 4 cut(s) 256, 901, 1248, 1466
Ppu21I YACGTR 1 cut(s) 831
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 6 cut(s) 174, 360, 507, 867, 1168, 1411
PspPI GGNCC 2 cut(s) 613, 971
PstI CTGCAG 1 cut(s) 943
PsuI RGATCY 2 cut(s) 865, 1059
PteI GCGCGC 1 cut(s) 5
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 2 cut(s) 675, 1245
SatI GCNGC 5 cut(s) 25, 265, 555, 939, 1425
Sau96I GGNCC 2 cut(s) 613, 971
SchI GAGTC 4 cut(s) 257, 902, 1248, 1467
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 212
SexAI ACCWGGT 1 cut(s) 652
SfaNI GCATC 3 cut(s) 200, 726, 968
SfcI CTRYAG 1 cut(s) 939
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 1 cut(s) 971
SlaI CTCGAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 278, 674
SmoI CTYRAG 2 cut(s) 278, 674
SsiI CCGC 6 cut(s) 25, 49, 117, 213, 264, 641
SspMI CTAG 2 cut(s) 396, 849
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 625
TaaI ACNGT 1 cut(s) 1163
TaiI ACGT 5 cut(s) 108, 799, 806, 833, 1153
TaqI TCGA 5 cut(s) 31, 164, 279, 879, 932
TauI GCSGC 2 cut(s) 27, 267
TfiI GAWTC 5 cut(s) 88, 430, 484, 691, 944
Tru1I TTAA 2 cut(s) 675, 1245
Tru9I TTAA 2 cut(s) 675, 1245
TscAI CASTG 2 cut(s) 981, 1166
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 3 cut(s) 554, 938, 1424
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 7 cut(s) 738, 936, 1004, 1205, 1320, 1350, 1430
TspGWI ACGGA 1 cut(s) 1133
TspRI CASTG 2 cut(s) 981, 1166
Vha464I CTTAAG 1 cut(s) 674
VpaK11BI GGWCC 1 cut(s) 971
XapI RAATTY 3 cut(s) 918, 1308, 1320
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 2 cut(s) 396, 849
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.