Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004976.1

Orthogroup ID

OG0017996

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 842

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004976.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 617 bp

atggcgcgcaacctcgccgccatcgaaaccctcctcataaaccgcctctccttcccgccaacgccgtcatccggccaagtgattccggcctcaggcgacgtcgtcggcgaggccaagacctcccacgggttgcaagttaggaactttcaagcgaaatcggtgccgttgaattatcgcgcatcgccgactttgttgagcgccgcccagttcgcagttgaggatggccaatacgacgagtcgtctaaaaagagcggcgacgatggcctcgagatttcgaagctagggattgatcacgagattgtatctgctttggccaagaagggaatcactaagctttttcccattcagagagctgtgttggaaccagcaatgcaagggcgtgatatgattggtcgtgctagaactggaactgggaaaactcttgcatttgggattcccattttggataaaatcattcaattcaatgccaaacatggccgtgggaggaatcctttggctttggtgttggctccgacgagagaacttgcaaagcaagttgacaaggaattctatgaggcagcaccgagtttggatacgatttgtgtgtatggtggtacacccattggaaggcagatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

206

Amino Acids

22.04

Weight (kDa)

9.38

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017996)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38261
rosa_multiflora	Rmu_sc0002048.1_g000001 Rmu_sc0002048.1_g000003 Rmu_sc0004976.1_g000001 Rmu_sc0025549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421920
rosa_samantha	Rh2AG511100 Rh2BG521800 Rh2CG496200 Rh2DG531700
rosa_wichuraiana	Rw2G042010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	2 cut(s)	7, 177
AciI	CCGC	5 cut(s)	18, 43, 56, 201, 252
AcoI	YGGCCR	4 cut(s)	73, 223, 312, 475
AcsI	RAATTY	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	4 cut(s)	71, 92, 126, 606
AgsI	TTSAA	4 cut(s)	149, 169, 458, 463
AhdI	GACNNNNNGTC	1 cut(s)	238
AluBI	AGCT	3 cut(s)	280, 334, 353
AluI	AGCT	3 cut(s)	280, 334, 353
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	7 cut(s)	73, 87, 111, 223, 262, 312, 475
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	545
AspLEI	GCGC	4 cut(s)	7, 9, 179, 200
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	91
BalI	TGGCCA	2 cut(s)	225, 314
BanI	GGYRCC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	4 cut(s)	29, 215, 254, 607
BceAI	ACGGC	3 cut(s)	49, 148, 462
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciVI	GTATCC	1 cut(s)	565
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	2 cut(s)	281, 399
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	4 cut(s)	18, 201, 253, 558
BlsI	GCNGC	4 cut(s)	19, 202, 254, 559
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	266
BmiI	GGNNCC	3 cut(s)	162, 363, 510
BmrI	ACTGGG	2 cut(s)	199, 420
BmsI	GCATC	1 cut(s)	188
BmuI	ACTGGG	2 cut(s)	199, 420
Bpu14I	TTCGAA	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	124, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 92, 126, 606
Bse1I	ACTGG	3 cut(s)	205, 409, 415
Bse21I	CCTNAGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	124, 478
BseGI	GGATG	2 cut(s)	68, 226
BseLI	CCNNNNNNNGG	4 cut(s)	71, 92, 126, 606
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	3 cut(s)	205, 409, 415
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	569
Bsh1236I	CGCG	2 cut(s)	7, 177
BshFI	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
BshNI	GGYRCC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	72, 86
BslI	CCNNNNNNNGG	4 cut(s)	71, 92, 126, 606
BsnI	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	5 cut(s)	18, 43, 56, 201, 252
BspANI	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	2 cut(s)	7, 177
BspLI	GGNNCC	3 cut(s)	162, 363, 510
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	205, 409, 415
BssECI	CCNNGG	2 cut(s)	124, 478
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	99
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	91, 330
BstDSI	CCRYGG	2 cut(s)	124, 478
BstF5I	GGATG	2 cut(s)	68, 226
BstFNI	CGCG	2 cut(s)	7, 177
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	4 cut(s)	7, 9, 179, 200
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 261
BstUI	CGCG	2 cut(s)	7, 177
BstV1I	GCAGC	1 cut(s)	569
Bsu36I	CCTNAGG	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
BtgI	CCRYGG	2 cut(s)	124, 478
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	68, 226
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	4 cut(s)	7, 9, 179, 200
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	1 cut(s)	473
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	2 cut(s)	91, 330
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DriI	GACNNNNNGTC	1 cut(s)	238
EaeI	YGGCCR	4 cut(s)	73, 223, 312, 475
Eam1105I	GACNNNNNGTC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	545
FaeI	CATG	1 cut(s)	476
FaiI	YATR	5 cut(s)	38, 386, 474, 552, 588
FatI	CATG	1 cut(s)	472
FauI	CCCGC	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	4 cut(s)	18, 201, 253, 558
FokI	GGATG	2 cut(s)	55, 233
Fsp4HI	GCNGC	4 cut(s)	18, 201, 253, 558
FspBI	CTAG	2 cut(s)	281, 399
GlaI	GCGC	4 cut(s)	6, 8, 178, 199
GluI	GCNGC	4 cut(s)	18, 201, 253, 558
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	7 cut(s)	75, 89, 113, 225, 264, 314, 477
HapII	CCGG	2 cut(s)	72, 86
HhaI	GCGC	4 cut(s)	7, 9, 179, 200
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	476
Hin6I	GCGC	4 cut(s)	5, 7, 177, 198
HinP1I	GCGC	4 cut(s)	5, 7, 177, 198
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	5 cut(s)	82, 236, 324, 433, 487
HpaII	CCGG	2 cut(s)	72, 86
Hpy166II	GTNNAC	2 cut(s)	538, 596
Hpy188I	TCNGA	2 cut(s)	348, 513
Hpy188III	TCNNGA	2 cut(s)	268, 293
Hpy8I	GTNNAC	2 cut(s)	538, 596
Hpy99I	CGWCG	6 cut(s)	101, 104, 107, 236, 260, 517
HpyAV	CCTTC	3 cut(s)	61, 313, 600
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	133, 373, 425, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 261
HpyF3I	CTNAG	2 cut(s)	91, 330
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	476
HspAI	GCGC	4 cut(s)	5, 7, 177, 198
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	7 cut(s)	78, 85, 99, 218, 378, 390, 396
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	2 cut(s)	281, 399
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	291
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	1 cut(s)	289
MlsI	TGGCCA	2 cut(s)	225, 314
MluCI	AATT	3 cut(s)	169, 458, 545
MluNI	TGGCCA	2 cut(s)	225, 314
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	339, 536
Mox20I	TGGCCA	2 cut(s)	225, 314
MscI	TGGCCA	2 cut(s)	225, 314
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	2 cut(s)	225, 314
MspI	CCGG	2 cut(s)	72, 86
MvnI	CGCG	2 cut(s)	7, 177
MwoI	GCNNNNNNNGC	2 cut(s)	209, 261
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	476
NlaIV	GGNNCC	3 cut(s)	162, 363, 510
NspV	TTCGAA	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	266
PauI	GCGCGC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 105, 264
PfeI	GAWTC	4 cut(s)	82, 324, 433, 487
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	19, 202, 254, 559
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	162, 363, 510
PsyI	GACNNNGTC	1 cut(s)	101
PteI	GCGCGC	1 cut(s)	5
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	477
SatI	GCNGC	4 cut(s)	18, 201, 253, 558
Sau3AI	GATC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	245
SetI	ASST	6 cut(s)	15, 102, 122, 282, 336, 355
SfaNI	GCATC	1 cut(s)	188
Sfr274I	CTCGAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	169, 458, 545
SsiI	CCGC	5 cut(s)	18, 43, 56, 201, 252
SspMI	CTAG	2 cut(s)	281, 399
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	24, 267, 275
TasI	AATT	3 cut(s)	169, 458, 545
TauI	GCSGC	3 cut(s)	20, 203, 255
TfiI	GAWTC	4 cut(s)	82, 324, 433, 487
TseI	GCWGC	1 cut(s)	557
Tth111I	GACNNNGTC	1 cut(s)	101
XapI	RAATTY	1 cut(s)	545
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	2 cut(s)	281, 399
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.