Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017996

Physical Location & Seq

Genomic Coordinates Reverse (-)

76152592 .. 76152876

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG531700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATAAGCATCATGCTCCGACGGACACCCCGGATGGCGCGCAACGCGCAACCTCGCCGCCATCGAAACCCTCCTCATAAACCGCCTTTCCTTCCCTCCAACGCCGTCATCCCCGGCCAACTGATTCCGACCACAGGTGACGTCGGCGTCGGCGGTGAGGCTAAGACCTCCCACGGGTTTCAAGTTAGGAACTTCCAATCGAAATTGGTGCCTTTGAATTTTCGTGCATCGCCAACTTTGTTGAGCACCGCCCAGTTCGCCGTGGAGGACGGCCAGTACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

94

Amino Acids

10.39

Weight (kDa)

11.49

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017996)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38261
rosa_multiflora	Rmu_sc0002048.1_g000001 Rmu_sc0002048.1_g000003 Rmu_sc0004976.1_g000001 Rmu_sc0025549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421920
rosa_samantha	Rh2AG511100 Rh2BG521800 Rh2CG496200 Rh2DG531700
rosa_wichuraiana	Rw2G042010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	208
AccII	CGCG	2 cut(s)	40, 47
AciI	CCGC	4 cut(s)	58, 83, 153, 249
AcoI	YGGCCR	2 cut(s)	115, 271
AcsI	RAATTY	1 cut(s)	217
AcyI	GRCGYC	2 cut(s)	141, 147
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	134, 174
AgsI	TTSAA	2 cut(s)	182, 217
Alw21I	GWGCWC	1 cut(s)	248
AoxI	GGCC	2 cut(s)	115, 271
ApoI	RAATTY	1 cut(s)	217
AspLEI	GCGC	3 cut(s)	40, 42, 49
AsuC2I	CCSGG	2 cut(s)	31, 114
AsuHPI	GGTGA	2 cut(s)	149, 167
BanI	GGYRCC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	248
BccI	CCATC	2 cut(s)	28, 69
BceAI	ACGGC	2 cut(s)	89, 245
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BcnI	CCSGG	2 cut(s)	31, 114
BfaI	CTAG	1 cut(s)	283
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	31, 114
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	31, 114
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	2 cut(s)	18, 236
BmuI	ACTGGG	1 cut(s)	247
BpuMI	CCSGG	2 cut(s)	31, 114
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	141, 147
BsaJI	CCNNGG	4 cut(s)	29, 112, 172, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 174
Bse1I	ACTGG	2 cut(s)	253, 274
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	4 cut(s)	29, 112, 172, 261
BseGI	GGATG	2 cut(s)	39, 108
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	134, 174
BseNI	ACTGG	2 cut(s)	253, 274
BsePI	GCGCGC	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	63
Bsh1236I	CGCG	2 cut(s)	40, 47
BshFI	GGCC	2 cut(s)	117, 273
BshNI	GGYRCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	31, 114
BslI	CCNNNNNNNGG	2 cut(s)	134, 174
BsnI	GGCC	2 cut(s)	117, 273
Bsp1286I	GDGCHC	1 cut(s)	248
BspACI	CCGC	4 cut(s)	58, 83, 153, 249
BspANI	GGCC	2 cut(s)	117, 273
BspFNI	CGCG	2 cut(s)	40, 47
BspLI	GGNNCC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	253, 274
BssECI	CCNNGG	4 cut(s)	29, 112, 172, 261
BssHII	GCGCGC	1 cut(s)	38
BssNI	GRCGYC	2 cut(s)	141, 147
BstACI	GRCGYC	2 cut(s)	141, 147
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	2 cut(s)	172, 261
BstF5I	GGATG	2 cut(s)	39, 108
BstFNI	CGCG	2 cut(s)	40, 47
BstHHI	GCGC	3 cut(s)	40, 42, 49
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 46, 257
BstSCI	CCNGG	2 cut(s)	29, 112
BstUI	CGCG	2 cut(s)	40, 47
BsuRI	GGCC	2 cut(s)	117, 273
BtgI	CCRYGG	2 cut(s)	172, 261
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	39, 108
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	3 cut(s)	40, 42, 49
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	3 cut(s)	117, 161, 273
CviKI_1	RGCY	3 cut(s)	117, 161, 273
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	162
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	115, 271
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	14, 78
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	2 cut(s)	46, 95
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	283
GlaI	GCGC	3 cut(s)	39, 41, 48
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	117, 273
HapII	CCGG	2 cut(s)	31, 114
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	3 cut(s)	40, 42, 49
Hin1I	GRCGYC	2 cut(s)	141, 147
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	3 cut(s)	38, 40, 47
HinP1I	GCGC	3 cut(s)	38, 40, 47
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	31, 114
HphI	GGTGA	2 cut(s)	149, 167
Hpy188I	TCNGA	2 cut(s)	20, 129
Hpy99I	CGWCG	3 cut(s)	24, 146, 152
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 46, 257
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	2 cut(s)	141, 147
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	3 cut(s)	38, 40, 47
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	4 cut(s)	44, 120, 127, 266
LweI	GCATC	2 cut(s)	18, 236
MaeI	CTAG	1 cut(s)	283
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	2 cut(s)	203, 217
MmeI	TCCRAC	3 cut(s)	43, 123, 152
MnlI	CCTC	7 cut(s)	63, 81, 84, 106, 151, 178, 259
MspI	CCGG	2 cut(s)	31, 114
MspR9I	CCNGG	2 cut(s)	31, 114
MvnI	CGCG	2 cut(s)	40, 47
MwoI	GCNNNNNNNGC	3 cut(s)	44, 46, 257
NciI	CCSGG	2 cut(s)	31, 114
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	137
PauI	GCGCGC	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	2 cut(s)	61, 276
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	210
PteI	GCGCGC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SatI	GCNGC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	31, 114
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	4 cut(s)	55, 139, 144, 170
SfaNI	GCATC	2 cut(s)	18, 236
Sse9I	AATT	2 cut(s)	203, 217
SsiI	CCGC	4 cut(s)	58, 83, 153, 249
SspMI	CTAG	1 cut(s)	283
StyD4I	CCNGG	2 cut(s)	29, 112
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	64, 200
TasI	AATT	2 cut(s)	203, 217
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	37
XapI	RAATTY	1 cut(s)	217
XspI	CTAG	1 cut(s)	283
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.