DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55300 AT5G55300 AT5G55300 |
| fragaria_vesca | FvH4_2g39170 |
| rosa_chinensis | RchiOBHm_Chr6g0301891 |
| rosa_laevigata | RLG00000011212 |
| rosa_multiflora | Rmu_sc0000407.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00166300 |
| rosa_rugosa | Rorug06G0310500 |
| rosa_samantha | Rh6AG422700 Rh6BG429400 Rh6CG435900 Rh6DG422900 |
| rosa_wichuraiana | Rw6G036610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 506 |
| Acc36I | ACCTGC | 1 cut(s) | 861 |
| AccB1I | GGYRCC | 1 cut(s) | 204 |
| AccI | GTMKAC | 1 cut(s) | 912 |
| AciI | CCGC | 2 cut(s) | 403, 715 |
| AclWI | GGATC | 3 cut(s) | 413, 527, 1484 |
| AcsI | RAATTY | 4 cut(s) | 706, 860, 1533, 1547 |
| AcuI | CTGAAG | 2 cut(s) | 1209, 1564 |
| AfaI | GTAC | 1 cut(s) | 1526 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 214, 386, 470, 1401 |
| AflIII | ACRYGT | 1 cut(s) | 1083 |
| AgsI | TTSAA | 6 cut(s) | 344, 397, 634, 712, 1090, 1400 |
| AjiI | CACGTC | 1 cut(s) | 1010 |
| AjnI | CCWGG | 3 cut(s) | 349, 469, 1027 |
| AleI | CACNNNNGTG | 1 cut(s) | 1182 |
| Alw26I | GTCTC | 2 cut(s) | 102, 514 |
| AlwI | GGATC | 3 cut(s) | 413, 527, 1484 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1587 |
| AoxI | GGCC | 2 cut(s) | 364, 1030 |
| ApeKI | GCWGC | 2 cut(s) | 376, 576 |
| ApoI | RAATTY | 4 cut(s) | 706, 860, 1533, 1547 |
| AspLEI | GCGC | 2 cut(s) | 448, 757 |
| AspS9I | GGNCC | 2 cut(s) | 1240, 1570 |
| AsuHPI | GGTGA | 4 cut(s) | 383, 887, 1169, 1328 |
| AvaII | GGWCC | 2 cut(s) | 1240, 1570 |
| BanI | GGYRCC | 1 cut(s) | 204 |
| BbsI | GAAGAC | 1 cut(s) | 1103 |
| BbvI | GCAGC | 2 cut(s) | 388, 588 |
| BccI | CCATC | 4 cut(s) | 115, 302, 893, 1360 |
| BceAI | ACGGC | 2 cut(s) | 351, 1053 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 734, 768 |
| BciT130I | CCWGG | 3 cut(s) | 351, 471, 1029 |
| BciVI | GTATCC | 1 cut(s) | 982 |
| BcoDI | GTCTC | 2 cut(s) | 102, 514 |
| BfaI | CTAG | 2 cut(s) | 687, 1125 |
| BfuAI | ACCTGC | 1 cut(s) | 861 |
| BfuI | GTATCC | 1 cut(s) | 982 |
| BisI | GCNGC | 3 cut(s) | 377, 577, 716 |
| BlsI | GCNGC | 3 cut(s) | 378, 578, 717 |
| Bme1390I | CCNGG | 3 cut(s) | 351, 471, 1029 |
| Bme18I | GGWCC | 2 cut(s) | 1240, 1570 |
| BmgBI | CACGTC | 1 cut(s) | 1010 |
| BmgT120I | GGNCC | 2 cut(s) | 1240, 1570 |
| BmiI | GGNNCC | 2 cut(s) | 206, 1572 |
| BmrFI | CCNGG | 3 cut(s) | 351, 471, 1029 |
| BmsI | GCATC | 4 cut(s) | 160, 433, 1014, 1073 |
| BpiI | GAAGAC | 1 cut(s) | 1103 |
| Bpu10I | CCTNAGC | 2 cut(s) | 36, 758 |
| BpuEI | CTTGAG | 2 cut(s) | 607, 1526 |
| BsaJI | CCNNGG | 3 cut(s) | 361, 367, 1472 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 214, 386, 470, 1401 |
| Bse1I | ACTGG | 3 cut(s) | 20, 485, 982 |
| Bse3DI | GCAATG | 2 cut(s) | 840, 1566 |
| BseBI | CCWGG | 3 cut(s) | 351, 471, 1029 |
| BseDI | CCNNGG | 3 cut(s) | 361, 367, 1472 |
| BseGI | GGATG | 5 cut(s) | 126, 175, 448, 784, 1570 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 214, 386, 470, 1401 |
| BseMI | GCAATG | 2 cut(s) | 840, 1566 |
| BseMII | CTCAG | 1 cut(s) | 27 |
| BseNI | ACTGG | 3 cut(s) | 20, 485, 982 |
| BseRI | GAGGAG | 4 cut(s) | 59, 296, 335, 560 |
| BseXI | GCAGC | 2 cut(s) | 388, 588 |
| BseYI | CCCAGC | 3 cut(s) | 525, 568, 764 |
| BsgI | GTGCAG | 1 cut(s) | 258 |
| BshFI | GGCC | 2 cut(s) | 366, 1032 |
| BshNI | GGYRCC | 1 cut(s) | 204 |
| BslFI | GGGAC | 2 cut(s) | 542, 1285 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 214, 386, 470, 1401 |
| BsmAI | GTCTC | 2 cut(s) | 102, 514 |
| BsmFI | GGGAC | 2 cut(s) | 542, 1285 |
| BsmI | GAATGC | 2 cut(s) | 464, 1009 |
| BsnI | GGCC | 2 cut(s) | 366, 1032 |
| Bsp1407I | TGTACA | 1 cut(s) | 1524 |
| Bsp143I | GATC | 3 cut(s) | 405, 532, 1476 |
| BspACI | CCGC | 2 cut(s) | 403, 715 |
| BspANI | GGCC | 2 cut(s) | 366, 1032 |
| BspCNI | CTCAG | 1 cut(s) | 28 |
| BspLI | GGNNCC | 2 cut(s) | 206, 1572 |
| BspMI | ACCTGC | 1 cut(s) | 861 |
| BspPI | GGATC | 3 cut(s) | 413, 527, 1484 |
| BspQI | GCTCTTC | 1 cut(s) | 980 |
| BspT107I | GGYRCC | 1 cut(s) | 204 |
| BsrDI | GCAATG | 2 cut(s) | 840, 1566 |
| BsrGI | TGTACA | 1 cut(s) | 1524 |
| BsrI | ACTGG | 3 cut(s) | 20, 485, 982 |
| BssECI | CCNNGG | 3 cut(s) | 361, 367, 1472 |
| BssMI | GATC | 3 cut(s) | 405, 532, 1476 |
| Bst2UI | CCWGG | 3 cut(s) | 351, 471, 1029 |
| Bst4CI | ACNGT | 4 cut(s) | 508, 802, 1316, 1483 |
| Bst6I | CTCTTC | 2 cut(s) | 237, 980 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 701 |
| BstAUI | TGTACA | 1 cut(s) | 1524 |
| BstC8I | GCNNGC | 3 cut(s) | 523, 1185, 1496 |
| BstDEI | CTNAG | 3 cut(s) | 36, 758, 1218 |
| BstDSI | CCRYGG | 1 cut(s) | 367 |
| BstF5I | GGATG | 5 cut(s) | 126, 175, 448, 784, 1570 |
| BstHHI | GCGC | 2 cut(s) | 448, 757 |
| BstKTI | GATC | 3 cut(s) | 408, 535, 1479 |
| BstMAI | GTCTC | 2 cut(s) | 102, 514 |
| BstMBI | GATC | 3 cut(s) | 405, 532, 1476 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 701, 761, 1130 |
| BstNI | CCWGG | 3 cut(s) | 351, 471, 1029 |
| BstNSI | RCATGY | 2 cut(s) | 155, 1087 |
| BstSCI | CCNGG | 3 cut(s) | 349, 469, 1027 |
| BstV1I | GCAGC | 2 cut(s) | 388, 588 |
| BstV2I | GAAGAC | 1 cut(s) | 1103 |
| BsuI | GTATCC | 1 cut(s) | 982 |
| BsuRI | GGCC | 2 cut(s) | 366, 1032 |
| BtgI | CCRYGG | 1 cut(s) | 367 |
| BtrI | CACGTC | 1 cut(s) | 1010 |
| BtsCI | GGATG | 5 cut(s) | 126, 175, 448, 784, 1570 |
| BtsI | GCAGTG | 1 cut(s) | 970 |
| BtsIMutI | CAGTG | 4 cut(s) | 27, 65, 970, 1304 |
| BveI | ACCTGC | 1 cut(s) | 861 |
| Cac8I | GCNNGC | 3 cut(s) | 523, 1185, 1496 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1587 |
| CfoI | GCGC | 2 cut(s) | 448, 757 |
| Cfr13I | GGNCC | 2 cut(s) | 1240, 1570 |
| Csp6I | GTAC | 1 cut(s) | 1525 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1548, 1583 |
| CviAII | CATG | 6 cut(s) | 152, 497, 513, 1084, 1488, 1502 |
| CviQI | GTAC | 1 cut(s) | 1525 |
| DdeI | CTNAG | 3 cut(s) | 36, 758, 1218 |
| DpnI | GATC | 3 cut(s) | 407, 534, 1478 |
| DpnII | GATC | 3 cut(s) | 405, 532, 1476 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 506 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 506 |
| Eam1104I | CTCTTC | 2 cut(s) | 237, 980 |
| EarI | CTCTTC | 2 cut(s) | 237, 980 |
| EciI | GGCGGA | 1 cut(s) | 418 |
| Eco32I | GATATC | 1 cut(s) | 893 |
| Eco47I | GGWCC | 2 cut(s) | 1240, 1570 |
| Eco57I | CTGAAG | 2 cut(s) | 1209, 1564 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1240 |
| EcoRI | GAATTC | 1 cut(s) | 860 |
| EcoRII | CCWGG | 3 cut(s) | 349, 469, 1027 |
| EcoRV | GATATC | 1 cut(s) | 893 |
| EcoT22I | ATGCAT | 1 cut(s) | 1066 |
| FaeI | CATG | 6 cut(s) | 155, 500, 516, 1087, 1491, 1505 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 900, 932, 1322, 1354 |
| FaqI | GGGAC | 2 cut(s) | 542, 1285 |
| FatI | CATG | 6 cut(s) | 151, 496, 512, 1083, 1487, 1501 |
| FblI | GTMKAC | 1 cut(s) | 912 |
| Fnu4HI | GCNGC | 3 cut(s) | 377, 577, 716 |
| FokI | GGATG | 5 cut(s) | 133, 182, 455, 791, 1577 |
| Fsp4HI | GCNGC | 3 cut(s) | 377, 577, 716 |
| FspBI | CTAG | 2 cut(s) | 687, 1125 |
| GlaI | GCGC | 2 cut(s) | 447, 756 |
| GluI | GCNGC | 3 cut(s) | 377, 577, 716 |
| GsaI | CCCAGC | 3 cut(s) | 529, 572, 768 |
| HaeIII | GGCC | 2 cut(s) | 366, 1032 |
| HhaI | GCGC | 2 cut(s) | 448, 757 |
| Hin1II | CATG | 6 cut(s) | 155, 500, 516, 1087, 1491, 1505 |
| Hin6I | GCGC | 2 cut(s) | 446, 755 |
| HinP1I | GCGC | 2 cut(s) | 446, 755 |
| HincII | GTYRAC | 1 cut(s) | 913 |
| HindII | GTYRAC | 1 cut(s) | 913 |
| HindIII | AAGCTT | 1 cut(s) | 672 |
| HinfI | GANTC | 6 cut(s) | 31, 102, 451, 651, 881, 1584 |
| HphI | GGTGA | 4 cut(s) | 383, 887, 1169, 1328 |
| Hpy166II | GTNNAC | 5 cut(s) | 25, 913, 925, 1138, 1570 |
| Hpy188III | TCNNGA | 7 cut(s) | 35, 118, 387, 455, 1265, 1466, 1543 |
| Hpy8I | GTNNAC | 5 cut(s) | 25, 913, 925, 1138, 1570 |
| Hpy99I | CGWCG | 1 cut(s) | 1381 |
| HpyCH4III | ACNGT | 4 cut(s) | 508, 802, 1316, 1483 |
| HpyCH4IV | ACGT | 1 cut(s) | 1009 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 701, 761, 1130 |
| HpyF3I | CTNAG | 3 cut(s) | 36, 758, 1218 |
| HpySE526I | ACGT | 1 cut(s) | 1009 |
| Hsp92II | CATG | 6 cut(s) | 155, 500, 516, 1087, 1491, 1505 |
| HspAI | GCGC | 2 cut(s) | 446, 755 |
| Kzo9I | GATC | 3 cut(s) | 405, 532, 1476 |
| LguI | GCTCTTC | 1 cut(s) | 980 |
| LmnI | GCTCC | 1 cut(s) | 1207 |
| Lsp1109I | GCAGC | 2 cut(s) | 388, 588 |
| LweI | GCATC | 4 cut(s) | 160, 433, 1014, 1073 |
| MaeI | CTAG | 2 cut(s) | 687, 1125 |
| MaeII | ACGT | 1 cut(s) | 1009 |
| MaeIII | GTNAC | 2 cut(s) | 599, 1316 |
| MalI | GATC | 3 cut(s) | 407, 534, 1478 |
| MboI | GATC | 3 cut(s) | 405, 532, 1476 |
| MfeI | CAATTG | 1 cut(s) | 230 |
| MlyI | GAGTC | 2 cut(s) | 25, 445 |
| MmeI | TCCRAC | 2 cut(s) | 208, 966 |
| Mph1103I | ATGCAT | 1 cut(s) | 1066 |
| MseI | TTAA | 1 cut(s) | 818 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1182 |
| MspR9I | CCNGG | 3 cut(s) | 351, 471, 1029 |
| MunI | CAATTG | 1 cut(s) | 230 |
| Mva1269I | GAATGC | 2 cut(s) | 464, 1009 |
| MvaI | CCWGG | 3 cut(s) | 351, 471, 1029 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 701, 761, 1130 |
| NdeII | GATC | 3 cut(s) | 405, 532, 1476 |
| NlaIII | CATG | 6 cut(s) | 155, 500, 516, 1087, 1491, 1505 |
| NlaIV | GGNNCC | 2 cut(s) | 206, 1572 |
| NmuCI | GTSAC | 2 cut(s) | 599, 1316 |
| NsiI | ATGCAT | 1 cut(s) | 1066 |
| NspI | RCATGY | 2 cut(s) | 155, 1087 |
| OliI | CACNNNNGTG | 1 cut(s) | 1182 |
| PciI | ACATGT | 1 cut(s) | 1083 |
| PciSI | GCTCTTC | 1 cut(s) | 980 |
| PctI | GAATGC | 2 cut(s) | 464, 1009 |
| PfeI | GAWTC | 4 cut(s) | 102, 651, 881, 1584 |
| PkrI | GCNGC | 3 cut(s) | 378, 578, 717 |
| PleI | GAGTC | 2 cut(s) | 25, 445 |
| PpsI | GAGTC | 2 cut(s) | 25, 445 |
| PpuMI | RGGWCCY | 1 cut(s) | 1240 |
| PscI | ACATGT | 1 cut(s) | 1083 |
| Psp5II | RGGWCCY | 1 cut(s) | 1240 |
| Psp6I | CCWGG | 3 cut(s) | 349, 469, 1027 |
| PspFI | CCCAGC | 3 cut(s) | 525, 568, 764 |
| PspGI | CCWGG | 3 cut(s) | 349, 469, 1027 |
| PspN4I | GGNNCC | 2 cut(s) | 206, 1572 |
| PspPI | GGNCC | 2 cut(s) | 1240, 1570 |
| PspPPI | RGGWCCY | 1 cut(s) | 1240 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1587 |
| RsaI | GTAC | 1 cut(s) | 1526 |
| RsaNI | GTAC | 1 cut(s) | 1525 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1182 |
| SalI | GTCGAC | 1 cut(s) | 911 |
| SapI | GCTCTTC | 1 cut(s) | 980 |
| SaqAI | TTAA | 1 cut(s) | 818 |
| SatI | GCNGC | 3 cut(s) | 377, 577, 716 |
| Sau3AI | GATC | 3 cut(s) | 405, 532, 1476 |
| Sau96I | GGNCC | 2 cut(s) | 1240, 1570 |
| SchI | GAGTC | 2 cut(s) | 25, 445 |
| ScrFI | CCNGG | 3 cut(s) | 351, 471, 1029 |
| SfaNI | GCATC | 4 cut(s) | 160, 433, 1014, 1073 |
| SinI | GGWCC | 2 cut(s) | 1240, 1570 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1182 |
| SmlI | CTYRAG | 2 cut(s) | 586, 1541 |
| SmoI | CTYRAG | 2 cut(s) | 586, 1541 |
| SsiI | CCGC | 2 cut(s) | 403, 715 |
| SspMI | CTAG | 2 cut(s) | 687, 1125 |
| StyD4I | CCNGG | 3 cut(s) | 349, 469, 1027 |
| TaaI | ACNGT | 4 cut(s) | 508, 802, 1316, 1483 |
| TaiI | ACGT | 1 cut(s) | 1012 |
| TaqI | TCGA | 7 cut(s) | 272, 337, 744, 864, 912, 978, 1451 |
| TatI | WGTACW | 1 cut(s) | 1524 |
| TauI | GCSGC | 1 cut(s) | 718 |
| TfiI | GAWTC | 4 cut(s) | 102, 651, 881, 1584 |
| Tru1I | TTAA | 1 cut(s) | 818 |
| Tru9I | TTAA | 1 cut(s) | 818 |
| TscAI | CASTG | 4 cut(s) | 27, 72, 970, 1311 |
| TseFI | GTSAC | 2 cut(s) | 599, 1316 |
| TseI | GCWGC | 2 cut(s) | 376, 576 |
| Tsp45I | GTSAC | 2 cut(s) | 599, 1316 |
| TspDTI | ATGAA | 2 cut(s) | 210, 1518 |
| TspGWI | ACGGA | 1 cut(s) | 1335 |
| TspRI | CASTG | 4 cut(s) | 27, 72, 970, 1311 |
| VpaK11BI | GGWCC | 2 cut(s) | 1240, 1570 |
| XapI | RAATTY | 4 cut(s) | 706, 860, 1533, 1547 |
| XceI | RCATGY | 2 cut(s) | 155, 1087 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 195 |
| XmiI | GTMKAC | 1 cut(s) | 912 |
| XspI | CTAG | 2 cut(s) | 687, 1125 |
| Zsp2I | ATGCAT | 1 cut(s) | 1066 |