DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55300 AT5G55300 AT5G55300 |
| fragaria_vesca | FvH4_2g39170 |
| rosa_chinensis | RchiOBHm_Chr6g0301891 |
| rosa_laevigata | RLG00000011212 |
| rosa_multiflora | Rmu_sc0000407.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00166300 |
| rosa_rugosa | Rorug06G0310500 |
| rosa_samantha | Rh6AG422700 Rh6BG429400 Rh6CG435900 Rh6DG422900 |
| rosa_wichuraiana | Rw6G036610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 580 |
| AccB1I | GGYRCC | 2 cut(s) | 580, 951 |
| AccI | GTMKAC | 1 cut(s) | 514 |
| AccII | CGCG | 1 cut(s) | 812 |
| AciI | CCGC | 4 cut(s) | 233, 382, 1094, 1150 |
| AclWI | GGATC | 4 cut(s) | 399, 654, 1274, 2222 |
| AcsI | RAATTY | 4 cut(s) | 1453, 1881, 2271, 2285 |
| AcuI | CTGAAG | 1 cut(s) | 405 |
| AfaI | GTAC | 3 cut(s) | 582, 1307, 1933 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 161, 961, 1133, 1217 |
| AhlI | ACTAGT | 1 cut(s) | 689 |
| AjnI | CCWGG | 3 cut(s) | 641, 1096, 1774 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 577, 609 |
| AleI | CACNNNNGTG | 1 cut(s) | 705 |
| AlwI | GGATC | 4 cut(s) | 399, 654, 1274, 2222 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1202 |
| AoxI | GGCC | 2 cut(s) | 383, 1777 |
| ApeKI | GCWGC | 3 cut(s) | 1123, 1554, 1557 |
| ApoI | RAATTY | 4 cut(s) | 1453, 1881, 2271, 2285 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2261 |
| Asp718I | GGTACC | 1 cut(s) | 580 |
| AspA2I | CCTAGG | 1 cut(s) | 2210 |
| AspS9I | GGNCC | 1 cut(s) | 2308 |
| AsuC2I | CCSGG | 1 cut(s) | 1218 |
| AsuHPI | GGTGA | 2 cut(s) | 144, 1634 |
| AvaII | GGWCC | 1 cut(s) | 2308 |
| AvrII | CCTAGG | 1 cut(s) | 2210 |
| BanI | GGYRCC | 2 cut(s) | 580, 951 |
| BbsI | GAAGAC | 2 cut(s) | 411, 1850 |
| BbvI | GCAGC | 3 cut(s) | 1135, 1541, 1544 |
| BccI | CCATC | 5 cut(s) | 106, 862, 1049, 1439, 2098 |
| BceAI | ACGGC | 3 cut(s) | 16, 95, 2130 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1481, 1515 |
| BciT130I | CCWGG | 3 cut(s) | 643, 1098, 1776 |
| BciVI | GTATCC | 1 cut(s) | 1729 |
| BclI | TGATCA | 2 cut(s) | 7, 169 |
| BcnI | CCSGG | 1 cut(s) | 1218 |
| BcuI | ACTAGT | 1 cut(s) | 689 |
| BfaI | CTAG | 7 cut(s) | 540, 654, 690, 1416, 1434, 1872, 2211 |
| BfuI | GTATCC | 1 cut(s) | 1729 |
| BglII | AGATCT | 1 cut(s) | 2008 |
| BisI | GCNGC | 4 cut(s) | 383, 1124, 1555, 1558 |
| BlnI | CCTAGG | 1 cut(s) | 2210 |
| BlsI | GCNGC | 4 cut(s) | 384, 1125, 1556, 1559 |
| Bme1390I | CCNGG | 4 cut(s) | 643, 1098, 1218, 1776 |
| Bme18I | GGWCC | 1 cut(s) | 2308 |
| BmgT120I | GGNCC | 1 cut(s) | 2308 |
| BmiI | GGNNCC | 4 cut(s) | 117, 582, 953, 2310 |
| BmrFI | CCNGG | 4 cut(s) | 643, 1098, 1218, 1776 |
| BmrI | ACTGGG | 1 cut(s) | 1190 |
| BmsI | GCATC | 7 cut(s) | 101, 738, 907, 1180, 1761, 1820, 1882 |
| BmuI | ACTGGG | 1 cut(s) | 1190 |
| BpiI | GAAGAC | 2 cut(s) | 411, 1850 |
| BpmI | CTGGAG | 2 cut(s) | 1625, 2067 |
| Bpu10I | CCTNAGC | 1 cut(s) | 378 |
| BpuEI | CTTGAG | 1 cut(s) | 1354 |
| BpuMI | CCSGG | 1 cut(s) | 1218 |
| Bsa29I | ATCGAT | 1 cut(s) | 1491 |
| BsaAI | YACGTR | 1 cut(s) | 1309 |
| BsaBI | GATNNNNATC | 1 cut(s) | 330 |
| BsaJI | CCNNGG | 3 cut(s) | 642, 1108, 2210 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 161, 961, 1133, 1217 |
| Bse1I | ACTGG | 4 cut(s) | 767, 1196, 1729, 2184 |
| Bse3DI | GCAATG | 1 cut(s) | 2304 |
| Bse8I | GATNNNNATC | 1 cut(s) | 330 |
| BseBI | CCWGG | 3 cut(s) | 643, 1098, 1776 |
| BseCI | ATCGAT | 1 cut(s) | 1491 |
| BseDI | CCNNGG | 3 cut(s) | 642, 1108, 2210 |
| BseJI | GATNNNNATC | 1 cut(s) | 330 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 161, 961, 1133, 1217 |
| BseMI | GCAATG | 1 cut(s) | 2304 |
| BseMII | CTCAG | 2 cut(s) | 402, 1281 |
| BseNI | ACTGG | 4 cut(s) | 767, 1196, 1729, 2184 |
| BseRI | GAGGAG | 4 cut(s) | 806, 1025, 1082, 1307 |
| BseXI | GCAGC | 3 cut(s) | 1135, 1541, 1544 |
| BseYI | CCCAGC | 3 cut(s) | 1272, 1315, 1511 |
| BsgI | GTGCAG | 1 cut(s) | 1543 |
| Bsh1236I | CGCG | 1 cut(s) | 812 |
| BshFI | GGCC | 2 cut(s) | 385, 1779 |
| BshNI | GGYRCC | 2 cut(s) | 580, 951 |
| BshVI | ATCGAT | 1 cut(s) | 1491 |
| BsiSI | CCGG | 2 cut(s) | 230, 1218 |
| BslFI | GGGAC | 2 cut(s) | 869, 2032 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 161, 961, 1133, 1217 |
| BsmFI | GGGAC | 2 cut(s) | 869, 2032 |
| BsmI | GAATGC | 2 cut(s) | 1211, 1756 |
| BsnI | GGCC | 2 cut(s) | 385, 1779 |
| Bsp68I | TCGCGA | 1 cut(s) | 812 |
| BspACI | CCGC | 4 cut(s) | 233, 382, 1094, 1150 |
| BspANI | GGCC | 2 cut(s) | 385, 1779 |
| BspCNI | CTCAG | 2 cut(s) | 403, 1282 |
| BspDI | ATCGAT | 1 cut(s) | 1491 |
| BspFNI | CGCG | 1 cut(s) | 812 |
| BspHI | TCATGA | 1 cut(s) | 279 |
| BspLI | GGNNCC | 4 cut(s) | 117, 582, 953, 2310 |
| BspPI | GGATC | 4 cut(s) | 399, 654, 1274, 2222 |
| BspT107I | GGYRCC | 2 cut(s) | 580, 951 |
| BsrDI | GCAATG | 1 cut(s) | 2304 |
| BsrI | ACTGG | 4 cut(s) | 767, 1196, 1729, 2184 |
| BssECI | CCNNGG | 3 cut(s) | 642, 1108, 2210 |
| BssT1I | CCWWGG | 1 cut(s) | 2210 |
| Bst2UI | CCWGG | 3 cut(s) | 643, 1098, 1776 |
| Bst4CI | ACNGT | 7 cut(s) | 183, 345, 512, 1131, 1255, 1549, 2221 |
| Bst6I | CTCTTC | 1 cut(s) | 984 |
| BstBAI | YACGTR | 1 cut(s) | 1309 |
| BstC8I | GCNNGC | 5 cut(s) | 200, 273, 1121, 1270, 2234 |
| BstDEI | CTNAG | 6 cut(s) | 378, 411, 426, 456, 1290, 1965 |
| BstFNI | CGCG | 1 cut(s) | 812 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 98, 1508, 2114 |
| BstNI | CCWGG | 3 cut(s) | 643, 1098, 1776 |
| BstNSI | RCATGY | 1 cut(s) | 902 |
| BstSCI | CCNGG | 4 cut(s) | 641, 1096, 1216, 1774 |
| BstSNI | TACGTA | 1 cut(s) | 1309 |
| BstUI | CGCG | 1 cut(s) | 812 |
| BstV1I | GCAGC | 3 cut(s) | 1135, 1541, 1544 |
| BstV2I | GAAGAC | 2 cut(s) | 411, 1850 |
| BstX2I | RGATCY | 1 cut(s) | 2008 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1603 |
| BstYI | RGATCY | 1 cut(s) | 2008 |
| Bsu15I | ATCGAT | 1 cut(s) | 1491 |
| BsuI | GTATCC | 1 cut(s) | 1729 |
| BsuRI | GGCC | 2 cut(s) | 385, 1779 |
| BsuTUI | ATCGAT | 1 cut(s) | 1491 |
| BtgZI | GCGATG | 2 cut(s) | 543, 827 |
| BtsI | GCAGTG | 1 cut(s) | 87 |
| BtsIMutI | CAGTG | 4 cut(s) | 87, 2051, 2177, 2217 |
| BtuMI | TCGCGA | 1 cut(s) | 812 |
| Cac8I | GCNNGC | 5 cut(s) | 200, 273, 1121, 1270, 2234 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1202 |
| CciI | TCATGA | 1 cut(s) | 279 |
| Cfr13I | GGNCC | 1 cut(s) | 2308 |
| ClaI | ATCGAT | 1 cut(s) | 1491 |
| Csp6I | GTAC | 3 cut(s) | 581, 1306, 1932 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2286, 2321 |
| CviAII | CATG | 9 cut(s) | 47, 280, 485, 737, 899, 1244, 1260, 2226, 2240 |
| CviQI | GTAC | 3 cut(s) | 581, 1306, 1932 |
| DdeI | CTNAG | 6 cut(s) | 378, 411, 426, 456, 1290, 1965 |
| DraI | TTTAAA | 2 cut(s) | 357, 1458 |
| Eam1104I | CTCTTC | 1 cut(s) | 984 |
| EarI | CTCTTC | 1 cut(s) | 984 |
| EciI | GGCGGA | 2 cut(s) | 248, 1165 |
| Eco105I | TACGTA | 1 cut(s) | 1309 |
| Eco130I | CCWWGG | 1 cut(s) | 2210 |
| Eco32I | GATATC | 1 cut(s) | 1399 |
| Eco47I | GGWCC | 1 cut(s) | 2308 |
| Eco57I | CTGAAG | 1 cut(s) | 405 |
| EcoRII | CCWGG | 3 cut(s) | 641, 1096, 1774 |
| EcoRV | GATATC | 1 cut(s) | 1399 |
| EcoT14I | CCWWGG | 1 cut(s) | 2210 |
| EcoT22I | ATGCAT | 1 cut(s) | 1813 |
| ErhI | CCWWGG | 1 cut(s) | 2210 |
| FaeI | CATG | 9 cut(s) | 50, 283, 488, 740, 902, 1247, 1263, 2229, 2243 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1647, 1679, 2060, 2092 |
| FaqI | GGGAC | 2 cut(s) | 869, 2032 |
| FatI | CATG | 9 cut(s) | 46, 279, 484, 736, 898, 1243, 1259, 2225, 2239 |
| FbaI | TGATCA | 2 cut(s) | 7, 169 |
| FblI | GTMKAC | 1 cut(s) | 514 |
| Fnu4HI | GCNGC | 4 cut(s) | 383, 1124, 1555, 1558 |
| Fsp4HI | GCNGC | 4 cut(s) | 383, 1124, 1555, 1558 |
| FspBI | CTAG | 7 cut(s) | 540, 654, 690, 1416, 1434, 1872, 2211 |
| GluI | GCNGC | 4 cut(s) | 383, 1124, 1555, 1558 |
| GsaI | CCCAGC | 3 cut(s) | 1276, 1319, 1515 |
| GsuI | CTGGAG | 2 cut(s) | 1625, 2067 |
| HaeIII | GGCC | 2 cut(s) | 385, 1779 |
| HapII | CCGG | 2 cut(s) | 230, 1218 |
| Hin1II | CATG | 9 cut(s) | 50, 283, 488, 740, 902, 1247, 1263, 2229, 2243 |
| HincII | GTYRAC | 1 cut(s) | 550 |
| HindII | GTYRAC | 1 cut(s) | 550 |
| HindIII | AAGCTT | 1 cut(s) | 438 |
| HinfI | GANTC | 7 cut(s) | 248, 290, 314, 849, 1628, 2080, 2322 |
| HpaI | GTTAAC | 1 cut(s) | 550 |
| HpaII | CCGG | 2 cut(s) | 230, 1218 |
| HphI | GGTGA | 2 cut(s) | 144, 1634 |
| Hpy166II | GTNNAC | 7 cut(s) | 515, 550, 687, 700, 838, 1672, 2308 |
| Hpy8I | GTNNAC | 7 cut(s) | 515, 550, 687, 700, 838, 1672, 2308 |
| HpyAV | CCTTC | 7 cut(s) | 955, 991, 1000, 1131, 1375, 1516, 1897 |
| HpyCH4III | ACNGT | 7 cut(s) | 183, 345, 512, 1131, 1255, 1549, 2221 |
| HpyCH4IV | ACGT | 2 cut(s) | 495, 1308 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 98, 1508, 2114 |
| HpyF3I | CTNAG | 6 cut(s) | 378, 411, 426, 456, 1290, 1965 |
| HpySE526I | ACGT | 2 cut(s) | 495, 1308 |
| Hsp92II | CATG | 9 cut(s) | 50, 283, 488, 740, 902, 1247, 1263, 2229, 2243 |
| KpnI | GGTACC | 1 cut(s) | 584 |
| Ksp22I | TGATCA | 2 cut(s) | 7, 169 |
| KspAI | GTTAAC | 1 cut(s) | 550 |
| LmnI | GCTCC | 4 cut(s) | 121, 232, 876, 1954 |
| Lsp1109I | GCAGC | 3 cut(s) | 1135, 1541, 1544 |
| LweI | GCATC | 7 cut(s) | 101, 738, 907, 1180, 1761, 1820, 1882 |
| MaeI | CTAG | 7 cut(s) | 540, 654, 690, 1416, 1434, 1872, 2211 |
| MaeII | ACGT | 2 cut(s) | 495, 1308 |
| MaeIII | GTNAC | 1 cut(s) | 1346 |
| MfeI | CAATTG | 1 cut(s) | 1587 |
| MflI | RGATCY | 1 cut(s) | 2008 |
| MlyI | GAGTC | 1 cut(s) | 2074 |
| MmeI | TCCRAC | 2 cut(s) | 1208, 1713 |
| Mph1103I | ATGCAT | 1 cut(s) | 1813 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2261 |
| MseI | TTAA | 8 cut(s) | 122, 356, 549, 1019, 1457, 1530, 1565, 1991 |
| MslI | CAYNNNNRTG | 2 cut(s) | 51, 705 |
| MspI | CCGG | 2 cut(s) | 230, 1218 |
| MspR9I | CCNGG | 4 cut(s) | 643, 1098, 1218, 1776 |
| MunI | CAATTG | 1 cut(s) | 1587 |
| Mva1269I | GAATGC | 2 cut(s) | 1211, 1756 |
| MvaI | CCWGG | 3 cut(s) | 643, 1098, 1776 |
| MvnI | CGCG | 1 cut(s) | 812 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 98, 1508, 2114 |
| NciI | CCSGG | 1 cut(s) | 1218 |
| NlaIII | CATG | 9 cut(s) | 50, 283, 488, 740, 902, 1247, 1263, 2229, 2243 |
| NlaIV | GGNNCC | 4 cut(s) | 117, 582, 953, 2310 |
| NmuCI | GTSAC | 1 cut(s) | 1346 |
| NruI | TCGCGA | 1 cut(s) | 812 |
| NsiI | ATGCAT | 1 cut(s) | 1813 |
| NspI | RCATGY | 1 cut(s) | 902 |
| OliI | CACNNNNGTG | 1 cut(s) | 705 |
| PagI | TCATGA | 1 cut(s) | 279 |
| PctI | GAATGC | 2 cut(s) | 1211, 1756 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2261 |
| PfeI | GAWTC | 6 cut(s) | 248, 290, 314, 849, 1628, 2322 |
| PkrI | GCNGC | 4 cut(s) | 384, 1125, 1556, 1559 |
| PleI | GAGTC | 1 cut(s) | 2074 |
| PpsI | GAGTC | 1 cut(s) | 2074 |
| Ppu21I | YACGTR | 1 cut(s) | 1309 |
| Psp6I | CCWGG | 3 cut(s) | 641, 1096, 1774 |
| PspFI | CCCAGC | 3 cut(s) | 1272, 1315, 1511 |
| PspGI | CCWGG | 3 cut(s) | 641, 1096, 1774 |
| PspN4I | GGNNCC | 4 cut(s) | 117, 582, 953, 2310 |
| PspPI | GGNCC | 1 cut(s) | 2308 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1202 |
| PsuI | RGATCY | 1 cut(s) | 2008 |
| RruI | TCGCGA | 1 cut(s) | 812 |
| RsaI | GTAC | 3 cut(s) | 582, 1307, 1933 |
| RsaNI | GTAC | 3 cut(s) | 581, 1306, 1932 |
| RseI | CAYNNNNRTG | 2 cut(s) | 51, 705 |
| SaqAI | TTAA | 8 cut(s) | 122, 356, 549, 1019, 1457, 1530, 1565, 1991 |
| SatI | GCNGC | 4 cut(s) | 383, 1124, 1555, 1558 |
| Sau96I | GGNCC | 1 cut(s) | 2308 |
| SchI | GAGTC | 1 cut(s) | 2074 |
| ScrFI | CCNGG | 4 cut(s) | 643, 1098, 1218, 1776 |
| SfaNI | GCATC | 7 cut(s) | 101, 738, 907, 1180, 1761, 1820, 1882 |
| SinI | GGWCC | 1 cut(s) | 2308 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 51, 705 |
| SmlI | CTYRAG | 1 cut(s) | 1333 |
| SmoI | CTYRAG | 1 cut(s) | 1333 |
| SnaBI | TACGTA | 1 cut(s) | 1309 |
| SpeI | ACTAGT | 1 cut(s) | 689 |
| SsiI | CCGC | 4 cut(s) | 233, 382, 1094, 1150 |
| SspI | AATATT | 1 cut(s) | 406 |
| SspMI | CTAG | 7 cut(s) | 540, 654, 690, 1416, 1434, 1872, 2211 |
| StyD4I | CCNGG | 4 cut(s) | 641, 1096, 1216, 1774 |
| StyI | CCWWGG | 1 cut(s) | 2210 |
| TaaI | ACNGT | 7 cut(s) | 183, 345, 512, 1131, 1255, 1549, 2221 |
| TaiI | ACGT | 2 cut(s) | 498, 1311 |
| TaqI | TCGA | 3 cut(s) | 143, 1491, 2127 |
| TauI | GCSGC | 1 cut(s) | 385 |
| TfiI | GAWTC | 6 cut(s) | 248, 290, 314, 849, 1628, 2322 |
| Tru1I | TTAA | 8 cut(s) | 122, 356, 549, 1019, 1457, 1530, 1565, 1991 |
| Tru9I | TTAA | 8 cut(s) | 122, 356, 549, 1019, 1457, 1530, 1565, 1991 |
| TscAI | CASTG | 4 cut(s) | 94, 2058, 2184, 2224 |
| TseFI | GTSAC | 1 cut(s) | 1346 |
| TseI | GCWGC | 3 cut(s) | 1123, 1554, 1557 |
| Tsp45I | GTSAC | 1 cut(s) | 1346 |
| TspDTI | ATGAA | 8 cut(s) | 63, 138, 268, 273, 545, 585, 1248, 2256 |
| TspRI | CASTG | 4 cut(s) | 94, 2058, 2184, 2224 |
| VpaK11BI | GGWCC | 1 cut(s) | 2308 |
| XapI | RAATTY | 4 cut(s) | 1453, 1881, 2271, 2285 |
| XceI | RCATGY | 1 cut(s) | 902 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 942 |
| XmaJI | CCTAGG | 1 cut(s) | 2210 |
| XmiI | GTMKAC | 1 cut(s) | 514 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2261 |
| XspI | CTAG | 7 cut(s) | 540, 654, 690, 1416, 1434, 1872, 2211 |
| Zsp2I | ATGCAT | 1 cut(s) | 1813 |