Rh6CG435900

DNA topoisomerase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
61551810 .. 61565464
13655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG435900.1

Sequence Viewer

Length: 2277 bp
ATGGCTGATCAGAATTCTACTATACCGAAACCGAGTCTGTCTGACCATGAAGATGATGAGGAGCCTTTACTTTTCAAACGGTATAACACTGCATCTAAAGCAAAAGGTAAGATGGCTCCATTCAGGGCAATCCCAAAAGCCTCGACTTCATCACCAGTGTCTAGTTATGATCAGTCTAAACAGTTGCCAGAACAAATCGTGCCGTCTGCATCTGCTAAACATCCTGCTCCGGCAGAAGAGAATAGTGATTATGATGATGAAAAACCGTTGTGTGATTTCATGAAGGCTGGTTCCGATGAGGCAGGAGATTGGGATTCGGAGGATGATGATAATCAACCTCTATCGTCAAGGTATTTAAAGGGAAAAGGGAAAACTCCTAAGAGGCCTCTGGATCATCAAACCAATATTTCTGAGCAGTCTTCAGCTAAGAAGCCAAAAGTTTTAGGTTCTCTCCCTAAGAATAAGCAAGCATCATCAACAAAACATGAGCCAGAGGTAGATTATGATGACAGTAGACTTGCACATAGAATGAAGAAAGCTAGATCAGTTAACAAATCATCGCTGACGACAAAGAAAAAGAACTTGGATGCTTGTAATTTTCAACCAATATATGAATGGTGGTGCCAAGAGAAGGAGAAGAAGAAACAAATGAGTATGGAAGAGAAGAAGGCTGTGAAGGAGGAGAAATTAAAACAAGAGGAGAAGTATAAGTGGGCTACTATTGATGGTGTAAAAGAGGAGGTTCAGAGCTTTAGAGTTGAACCGCCTGGATTATTCCGAGGTCGTGGCGAGCAGCCACAGTCAGGAAGGTTGAAAAGGCGGATTGTTCCAAGTGATATTACAATCAACATAGGAAAGGATGCCCCAGTTCCTGAATGCCCCATTCCCGGTAAAAGTTGGAAACAAATAAGGCATGACAATACTGTTTCATGGTTAGCTTGCTGGGGTGATCCAATTTCTGAGGAGAAAACCAAGTACGTAATGCTGGGAGGTAGCAGTTCCTTGAGGGGTCAAAGTGACAAGGATAAATATGAGAAAGCAAGGGAGTTGAAGGACTACATAAATGATATCAGGACTGCATACACTAGGGCTTTTACTATCCCTAGTAAAGAAGATGGTGCAAATTTAAAGAGGCAGATAGCAGTAGCTACTTATCTCATCGATAGATTTGCTTTGAGGGCTGGGAACAAGAAGGATGTTAATGAGGAAGCCGATACTGTTGGCTGCTGCACATTAAAGGTAGAGAATGTAAAAGCAATTGCCCCCAACTTGCTGGAGTTTGACTTTCTTGGTAAAGATTCAATCAAATATCACCAAACTCATCAAGTTGAGCTTCCTGTTTACAAGGCAATCAAGCAGTTTCAGAATGGAAAGAGTAGTAGTGATAAGCTCTTTGACCAGTTGGATACGAATATATTGAATGCACATCTAAAGGAACTGATGCCTGGCCTTACAGCAAAAGTGTTCCGAACATACAATGCATCTATCACATTGGATAATATGTTGAATGAGAAGACTAAAAAAGAGGGAGATGTTTCAGCTAGAGTTGAAATTTACAAGAATGCAAACAAGAAGGTTGCTATCCTTTGCAATCATCAGCGTACTGAACCAAAGACTTTTGGGGAGCAAATATCTAAGCTAAACAAGAAGATTGAGGACTTAAAAGGCGTAATGGAAGATCTGGAAACAGATTTGGTCAAAGAAAGAAAAGGAAAGTCCCCACTGAACAGAAAACAAAAGAAGAATTTGACCCCAGATGTATTGGAGAAGAAGATGGCTCAAACGGCAAAGAAGATCGAAGCCATTGAAAGCAAAATTGCTGACAAAGAGGACAAAAAAAATGTTGCACTGGAAACATCTAAACCTCCCAGTTGCTCGTCCTCGTCTCGATTGCAAATCCTCCCTCAAAGTCTCACTCTCTCAGTCTCCTTCGATGCGAACACAGCTGAGTGTAGTTCAGCGAACACAGTTGCAACCAGCAACCTGTCTCCTCCAGTCCACCTCTCCGGTCTCCGAGCTCCGCCTTCAGGCTCCAGATGGGGACCGCAGCTAGACCAAGCTACTTACAAGAACTGTCAGCGTCTTTATCTTTCCGAACAGACCGATGGAAGTGTTCCAAATACCCTTGTGATTGCAAACTGTGAAGTTGTCAAACCTAGGGTTGCAGCTGCAGAGCACATATCACAGTTCAATGAAGAAGCACGCTCTCCTTTTGTAAAGAATTATAAAACTATAATACATCCTGGAGAGAGGTTGTTTATAGCCTTGTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

758

Amino Acids

85.06

Weight (kDa)

9.03

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Topoisom_I_N PF02919 190 - 329 9e-54 Eukaryotic DNA topoisomerase I, DNA binding fragment
Topoisom_I PF01028 332 - 563 1.2e-84 Eukaryotic DNA topoisomerase I, catalytic core
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016628)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55300 AT5G55300 AT5G55300
fragaria_vesca FvH4_2g39170
rosa_chinensis RchiOBHm_Chr6g0301891
rosa_laevigata RLG00000011212
rosa_multiflora Rmu_sc0000407.1_g000003
rosa_roxburghii Rroxscaffold_7G00166300
rosa_rugosa Rorug06G0310500
rosa_samantha Rh6AG422700 Rh6BG429400 Rh6CG435900 Rh6DG422900
rosa_wichuraiana Rw6G036610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2226
AccB1I GGYRCC 1 cut(s) 621
AccI GTMKAC 1 cut(s) 514
AciI CCGC 4 cut(s) 764, 820, 2021, 2045
AclWI GGATC 2 cut(s) 399, 944
AcsI RAATTY 4 cut(s) 13, 1123, 1551, 1744
AcuI CTGAAG 2 cut(s) 405, 2010
AfaI GTAC 2 cut(s) 977, 1603
AfiI CCNNNNNNNGG 4 cut(s) 631, 803, 887, 2027
AjnI CCWGG 3 cut(s) 766, 1444, 2242
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
Alw21I GWGCWC 2 cut(s) 2020, 2178
Alw26I GTCTC 5 cut(s) 1890, 1916, 1930, 1992, 2015
AlwI GGATC 2 cut(s) 399, 944
AlwNI CAGNNNCTG 1 cut(s) 872
AoxI GGCC 2 cut(s) 383, 1447
ApeKI GCWGC 6 cut(s) 793, 1224, 1227, 2047, 2165, 2168
ApoI RAATTY 4 cut(s) 13, 1123, 1551, 1744
AspA2I CCTAGG 1 cut(s) 2156
AspS9I GGNCC 1 cut(s) 2042
AsuC2I CCSGG 1 cut(s) 888
AsuHPI GGTGA 3 cut(s) 144, 959, 1304
AvaII GGWCC 1 cut(s) 2042
AvrII CCTAGG 1 cut(s) 2156
BanI GGYRCC 1 cut(s) 621
BanII GRGCYC 1 cut(s) 2020
BbsI GAAGAC 2 cut(s) 411, 1520
Bbv12I GWGCWC 2 cut(s) 2020, 2178
BbvI GCAGC 6 cut(s) 805, 1211, 1214, 2059, 2155, 2177
BccI CCATC 6 cut(s) 106, 719, 1109, 1768, 2031, 2099
BceAI ACGGC 2 cut(s) 187, 1800
BcgI CGANNNNNNTGC 2 cut(s) 1151, 1185
BciT130I CCWGG 3 cut(s) 768, 1446, 2244
BciVI GTATCC 1 cut(s) 1399
BclI TGATCA 2 cut(s) 7, 169
BcnI CCSGG 1 cut(s) 888
BcoDI GTCTC 5 cut(s) 1890, 1916, 1930, 1992, 2015
BfaI CTAG 7 cut(s) 162, 540, 1086, 1104, 1542, 2051, 2157
BfmI CTRYAG 1 cut(s) 2169
BfuI GTATCC 1 cut(s) 1399
BglII AGATCT 1 cut(s) 1678
BisI GCNGC 6 cut(s) 794, 1225, 1228, 2048, 2166, 2169
BlnI CCTAGG 1 cut(s) 2156
BlsI GCNGC 6 cut(s) 795, 1226, 1229, 2049, 2167, 2170
Bme1390I CCNGG 4 cut(s) 768, 888, 1446, 2244
Bme18I GGWCC 1 cut(s) 2042
BmgT120I GGNCC 1 cut(s) 2042
BmiI GGNNCC 6 cut(s) 63, 117, 292, 623, 2032, 2043
BmrFI CCNGG 4 cut(s) 768, 888, 1446, 2244
BmrI ACTGGG 2 cut(s) 860, 1863
BmsI GCATC 8 cut(s) 101, 218, 479, 577, 850, 1431, 1490, 1924
BmuI ACTGGG 2 cut(s) 860, 1863
BpiI GAAGAC 2 cut(s) 411, 1520
BpmI CTGGAG 4 cut(s) 1295, 1977, 2017, 2265
BpuEI CTTGAG 1 cut(s) 1024
BpuMI CCSGG 1 cut(s) 888
Bsa29I ATCGAT 1 cut(s) 1161
BsaAI YACGTR 1 cut(s) 979
BsaBI GATNNNNATC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 2015
BsaJI CCNNGG 2 cut(s) 778, 2156
BsaWI WCCGGW 1 cut(s) 2006
Bsc4I CCNNNNNNNGG 4 cut(s) 631, 803, 887, 2027
Bse1I ACTGG 6 cut(s) 155, 866, 1399, 1854, 1869, 1994
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 3 cut(s) 768, 1446, 2244
BseCI ATCGAT 1 cut(s) 1161
BseDI CCNNGG 2 cut(s) 778, 2156
BseGI GGATG 6 cut(s) 220, 328, 592, 865, 1201, 2239
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 4 cut(s) 631, 803, 887, 2027
BseMII CTCAG 4 cut(s) 402, 951, 1935, 1938
BseNI ACTGG 6 cut(s) 155, 866, 1399, 1854, 1869, 1994
BseRI GAGGAG 6 cut(s) 74, 695, 713, 752, 977, 1980
BseXI GCAGC 6 cut(s) 805, 1211, 1214, 2059, 2155, 2177
BseYI CCCAGC 3 cut(s) 942, 985, 1181
BsgI GTGCAG 1 cut(s) 1213
BshFI GGCC 2 cut(s) 385, 1449
BshNI GGYRCC 1 cut(s) 621
BshVI ATCGAT 1 cut(s) 1161
BsiHKAI GWGCWC 2 cut(s) 2020, 2178
BsiSI CCGG 3 cut(s) 230, 888, 2007
BslFI GGGAC 2 cut(s) 1702, 2055
BslI CCNNNNNNNGG 4 cut(s) 631, 803, 887, 2027
BsmAI GTCTC 5 cut(s) 1890, 1916, 1930, 1992, 2015
BsmBI CGTCTC 1 cut(s) 1890
BsmFI GGGAC 2 cut(s) 1702, 2055
BsmI GAATGC 3 cut(s) 881, 1426, 1567
BsnI GGCC 2 cut(s) 385, 1449
Bso31I GGTCTC 1 cut(s) 2015
Bsp1286I GDGCHC 2 cut(s) 2020, 2178
Bsp143I GATC 7 cut(s) 7, 169, 391, 542, 949, 1678, 1794
BspACI CCGC 4 cut(s) 764, 820, 2021, 2045
BspANI GGCC 2 cut(s) 385, 1449
BspCNI CTCAG 4 cut(s) 403, 952, 1934, 1939
BspDI ATCGAT 1 cut(s) 1161
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 6 cut(s) 63, 117, 292, 623, 2032, 2043
BspMAI CTGCAG 1 cut(s) 2173
BspPI GGATC 2 cut(s) 399, 944
BspT107I GGYRCC 1 cut(s) 621
BspTNI GGTCTC 1 cut(s) 2015
BsrI ACTGG 6 cut(s) 155, 866, 1399, 1854, 1869, 1994
BssECI CCNNGG 2 cut(s) 778, 2156
BssMI GATC 7 cut(s) 7, 169, 391, 542, 949, 1678, 1794
BssT1I CCWWGG 1 cut(s) 2156
Bst2UI CCWGG 3 cut(s) 768, 1446, 2244
Bst6I CTCTTC 2 cut(s) 231, 654
BstBAI YACGTR 1 cut(s) 979
BstC8I GCNNGC 4 cut(s) 468, 791, 940, 2203
BstDEI CTNAG 8 cut(s) 378, 411, 426, 456, 960, 1635, 1921, 1947
BstF5I GGATG 6 cut(s) 220, 328, 592, 865, 1201, 2239
BstKTI GATC 7 cut(s) 10, 172, 394, 545, 952, 1681, 1797
BstMAI GTCTC 5 cut(s) 1890, 1916, 1930, 1992, 2015
BstMBI GATC 7 cut(s) 7, 169, 391, 542, 949, 1678, 1794
BstMWI GCNNNNNNNGC 5 cut(s) 98, 1178, 1784, 1943, 2270
BstNI CCWGG 3 cut(s) 768, 1446, 2244
BstSCI CCNGG 4 cut(s) 766, 886, 1444, 2242
BstSFI CTRYAG 1 cut(s) 2169
BstSNI TACGTA 1 cut(s) 979
BstV1I GCAGC 6 cut(s) 805, 1211, 1214, 2059, 2155, 2177
BstV2I GAAGAC 2 cut(s) 411, 1520
BstX2I RGATCY 1 cut(s) 1678
BstXI CCANNNNNNTGG 1 cut(s) 1273
BstYI RGATCY 1 cut(s) 1678
Bsu15I ATCGAT 1 cut(s) 1161
BsuI GTATCC 1 cut(s) 1399
BsuRI GGCC 2 cut(s) 385, 1449
BsuTUI ATCGAT 1 cut(s) 1161
BtgZI GCGATG 1 cut(s) 543
BtsCI GGATG 6 cut(s) 220, 328, 592, 865, 1201, 2239
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 4 cut(s) 87, 162, 1721, 1847
Cac8I GCNNGC 4 cut(s) 468, 791, 940, 2203
CaiI CAGNNNCTG 1 cut(s) 872
CciI TCATGA 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 2042
ClaI ATCGAT 1 cut(s) 1161
CseI GACGC 1 cut(s) 2069
Csp6I GTAC 2 cut(s) 976, 1602
CviAII CATG 5 cut(s) 47, 280, 485, 914, 930
CviQI GTAC 2 cut(s) 976, 1602
DdeI CTNAG 8 cut(s) 378, 411, 426, 456, 960, 1635, 1921, 1947
DpnI GATC 7 cut(s) 9, 171, 393, 544, 951, 1680, 1796
DpnII GATC 7 cut(s) 7, 169, 391, 542, 949, 1678, 1794
DraI TTTAAA 2 cut(s) 357, 1128
Eam1104I CTCTTC 2 cut(s) 231, 654
EarI CTCTTC 2 cut(s) 231, 654
EciI GGCGGA 2 cut(s) 835, 2010
Ecl136II GAGCTC 1 cut(s) 2018
Eco105I TACGTA 1 cut(s) 979
Eco130I CCWWGG 1 cut(s) 2156
Eco147I AGGCCT 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 2020
Eco31I GGTCTC 1 cut(s) 2015
Eco32I GATATC 1 cut(s) 1069
Eco47I GGWCC 1 cut(s) 2042
Eco53kI GAGCTC 1 cut(s) 2018
Eco57I CTGAAG 2 cut(s) 405, 2010
EcoICRI GAGCTC 1 cut(s) 2018
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 766, 1444, 2242
EcoRV GATATC 1 cut(s) 1069
EcoT14I CCWWGG 1 cut(s) 2156
EcoT22I ATGCAT 1 cut(s) 1483
EcoT38I GRGCYC 1 cut(s) 2020
ErhI CCWWGG 1 cut(s) 2156
Esp3I CGTCTC 1 cut(s) 1890
FaeI CATG 5 cut(s) 50, 283, 488, 917, 933
FalI AAGNNNNNCTT 2 cut(s) 1317, 1349
FaqI GGGAC 2 cut(s) 1702, 2055
FatI CATG 5 cut(s) 46, 279, 484, 913, 929
FbaI TGATCA 2 cut(s) 7, 169
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 6 cut(s) 794, 1225, 1228, 2048, 2166, 2169
FokI GGATG 6 cut(s) 207, 335, 599, 872, 1208, 2226
FriOI GRGCYC 1 cut(s) 2020
Fsp4HI GCNGC 6 cut(s) 794, 1225, 1228, 2048, 2166, 2169
FspBI CTAG 7 cut(s) 162, 540, 1086, 1104, 1542, 2051, 2157
GluI GCNGC 6 cut(s) 794, 1225, 1228, 2048, 2166, 2169
GsaI CCCAGC 3 cut(s) 946, 989, 1185
GsuI CTGGAG 4 cut(s) 1295, 1977, 2017, 2265
HaeIII GGCC 2 cut(s) 385, 1449
HapII CCGG 3 cut(s) 230, 888, 2007
HgaI GACGC 1 cut(s) 2069
Hin1II CATG 5 cut(s) 50, 283, 488, 917, 933
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 3 cut(s) 34, 314, 1298
HpaI GTTAAC 1 cut(s) 550
HpaII CCGG 3 cut(s) 230, 888, 2007
HphI GGTGA 3 cut(s) 144, 959, 1304
Hpy166II GTNNAC 4 cut(s) 515, 550, 1342, 1999
Hpy188III TCNNGA 8 cut(s) 280, 389, 804, 872, 1072, 1682, 1887, 2034
Hpy8I GTNNAC 4 cut(s) 515, 550, 1342, 1999
HpyCH4IV ACGT 1 cut(s) 978
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 1178, 1784, 1943, 2270
HpyF3I CTNAG 8 cut(s) 378, 411, 426, 456, 960, 1635, 1921, 1947
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 5 cut(s) 50, 283, 488, 917, 933
Ksp22I TGATCA 2 cut(s) 7, 169
KspAI GTTAAC 1 cut(s) 550
Kzo9I GATC 7 cut(s) 7, 169, 391, 542, 949, 1678, 1794
LmnI GCTCC 6 cut(s) 61, 121, 232, 1624, 2023, 2036
Lsp1109I GCAGC 6 cut(s) 805, 1211, 1214, 2059, 2155, 2177
LweI GCATC 8 cut(s) 101, 218, 479, 577, 850, 1431, 1490, 1924
MaeI CTAG 7 cut(s) 162, 540, 1086, 1104, 1542, 2051, 2157
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 1 cut(s) 1016
MalI GATC 7 cut(s) 9, 171, 393, 544, 951, 1680, 1796
MboI GATC 7 cut(s) 7, 169, 391, 542, 949, 1678, 1794
MfeI CAATTG 1 cut(s) 1257
MflI RGATCY 1 cut(s) 1678
MhlI GDGCHC 2 cut(s) 2020, 2178
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 878, 1383
Mph1103I ATGCAT 1 cut(s) 1483
MseI TTAA 7 cut(s) 356, 549, 689, 1127, 1200, 1235, 1661
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 1946, 2168
MspI CCGG 3 cut(s) 230, 888, 2007
MspR9I CCNGG 4 cut(s) 768, 888, 1446, 2244
MunI CAATTG 1 cut(s) 1257
Mva1269I GAATGC 3 cut(s) 881, 1426, 1567
MvaI CCWGG 3 cut(s) 768, 1446, 2244
MwoI GCNNNNNNNGC 5 cut(s) 98, 1178, 1784, 1943, 2270
NciI CCSGG 1 cut(s) 888
NdeII GATC 7 cut(s) 7, 169, 391, 542, 949, 1678, 1794
NlaIII CATG 5 cut(s) 50, 283, 488, 917, 933
NlaIV GGNNCC 6 cut(s) 63, 117, 292, 623, 2032, 2043
NmuCI GTSAC 1 cut(s) 1016
NsiI ATGCAT 1 cut(s) 1483
PagI TCATGA 1 cut(s) 279
PceI AGGCCT 1 cut(s) 385
PctI GAATGC 3 cut(s) 881, 1426, 1567
PfeI GAWTC 2 cut(s) 314, 1298
PfoI TCCNGGA 1 cut(s) 2242
PkrI GCNGC 6 cut(s) 795, 1226, 1229, 2049, 2167, 2170
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 979
PsiI TTATAA 1 cut(s) 2226
Psp124BI GAGCTC 1 cut(s) 2020
Psp6I CCWGG 3 cut(s) 766, 1444, 2242
PspFI CCCAGC 3 cut(s) 942, 985, 1181
PspGI CCWGG 3 cut(s) 766, 1444, 2242
PspN4I GGNNCC 6 cut(s) 63, 117, 292, 623, 2032, 2043
PspPI GGNCC 1 cut(s) 2042
PstI CTGCAG 1 cut(s) 2173
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 1 cut(s) 1678
PvuII CAGCTG 2 cut(s) 1946, 2168
RsaI GTAC 2 cut(s) 977, 1603
RsaNI GTAC 2 cut(s) 976, 1602
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 2020
SaqAI TTAA 7 cut(s) 356, 549, 689, 1127, 1200, 1235, 1661
SatI GCNGC 6 cut(s) 794, 1225, 1228, 2048, 2166, 2169
Sau3AI GATC 7 cut(s) 7, 169, 391, 542, 949, 1678, 1794
Sau96I GGNCC 1 cut(s) 2042
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 4 cut(s) 768, 888, 1446, 2244
SduI GDGCHC 2 cut(s) 2020, 2178
SfaNI GCATC 8 cut(s) 101, 218, 479, 577, 850, 1431, 1490, 1924
SfcI CTRYAG 1 cut(s) 2169
SinI GGWCC 1 cut(s) 2042
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 1003
SmoI CTYRAG 1 cut(s) 1003
SnaBI TACGTA 1 cut(s) 979
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 4 cut(s) 764, 820, 2021, 2045
SspI AATATT 1 cut(s) 406
SspMI CTAG 7 cut(s) 162, 540, 1086, 1104, 1542, 2051, 2157
SstI GAGCTC 1 cut(s) 2020
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 4 cut(s) 766, 886, 1444, 2242
StyI CCWWGG 1 cut(s) 2156
TaiI ACGT 1 cut(s) 981
TaqI TCGA 5 cut(s) 143, 1161, 1797, 1888, 1932
TaqII GACCGA 1 cut(s) 2117
TfiI GAWTC 2 cut(s) 314, 1298
Tru1I TTAA 7 cut(s) 356, 549, 689, 1127, 1200, 1235, 1661
Tru9I TTAA 7 cut(s) 356, 549, 689, 1127, 1200, 1235, 1661
TscAI CASTG 4 cut(s) 94, 162, 1728, 1854
TseFI GTSAC 1 cut(s) 1016
TseI GCWGC 6 cut(s) 793, 1224, 1227, 2047, 2165, 2168
Tsp45I GTSAC 1 cut(s) 1016
TspDTI ATGAA 9 cut(s) 63, 138, 268, 273, 296, 545, 627, 918, 2208
TspRI CASTG 4 cut(s) 94, 162, 1728, 1854
VpaK11BI GGWCC 1 cut(s) 2042
XapI RAATTY 4 cut(s) 13, 1123, 1551, 1744
XcmI CCANNNNNNNNNTGG 1 cut(s) 612
XmaJI CCTAGG 1 cut(s) 2156
XmiI GTMKAC 1 cut(s) 514
XspI CTAG 7 cut(s) 162, 540, 1086, 1104, 1542, 2051, 2157
Zsp2I ATGCAT 1 cut(s) 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.