DNA topoisomerase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55300 AT5G55300 AT5G55300 |
| fragaria_vesca | FvH4_2g39170 |
| rosa_chinensis | RchiOBHm_Chr6g0301891 |
| rosa_laevigata | RLG00000011212 |
| rosa_multiflora | Rmu_sc0000407.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00166300 |
| rosa_rugosa | Rorug06G0310500 |
| rosa_samantha | Rh6AG422700 Rh6BG429400 Rh6CG435900 Rh6DG422900 |
| rosa_wichuraiana | Rw6G036610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 360 |
| AclWI | GGATC | 1 cut(s) | 911 |
| AcsI | RAATTY | 4 cut(s) | 570, 763, 960, 974 |
| AfaI | GTAC | 1 cut(s) | 622 |
| AgsI | TTSAA | 6 cut(s) | 70, 321, 439, 526, 569, 827 |
| AjnI | CCWGG | 1 cut(s) | 463 |
| AluBI | AGCT | 6 cut(s) | 167, 352, 409, 560, 658, 967 |
| AluI | AGCT | 6 cut(s) | 167, 352, 409, 560, 658, 967 |
| AlwI | GGATC | 1 cut(s) | 911 |
| AoxI | GGCC | 1 cut(s) | 466 |
| ApeKI | GCWGC | 2 cut(s) | 243, 246 |
| ApoI | RAATTY | 4 cut(s) | 570, 763, 960, 974 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 950 |
| AspA2I | CCTAGG | 1 cut(s) | 899 |
| AspS9I | GGNCC | 1 cut(s) | 997 |
| AsuHPI | GGTGA | 1 cut(s) | 323 |
| AvaII | GGWCC | 1 cut(s) | 997 |
| AvrII | CCTAGG | 1 cut(s) | 899 |
| BbsI | GAAGAC | 1 cut(s) | 539 |
| BbvI | GCAGC | 2 cut(s) | 230, 233 |
| BccI | CCATC | 2 cut(s) | 128, 787 |
| BceAI | ACGGC | 1 cut(s) | 819 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 170, 204 |
| BciT130I | CCWGG | 1 cut(s) | 465 |
| BciVI | GTATCC | 1 cut(s) | 418 |
| BfaI | CTAG | 4 cut(s) | 105, 123, 561, 900 |
| BfuI | GTATCC | 1 cut(s) | 418 |
| BglII | AGATCT | 1 cut(s) | 697 |
| BisI | GCNGC | 2 cut(s) | 244, 247 |
| BlnI | CCTAGG | 1 cut(s) | 899 |
| BlsI | GCNGC | 2 cut(s) | 245, 248 |
| Bme1390I | CCNGG | 1 cut(s) | 465 |
| Bme18I | GGWCC | 1 cut(s) | 997 |
| BmgT120I | GGNCC | 1 cut(s) | 997 |
| BmiI | GGNNCC | 1 cut(s) | 999 |
| BmrFI | CCNGG | 1 cut(s) | 465 |
| BmsI | GCATC | 2 cut(s) | 450, 509 |
| BpiI | GAAGAC | 1 cut(s) | 539 |
| BpmI | CTGGAG | 1 cut(s) | 314 |
| BpuEI | CTTGAG | 1 cut(s) | 43 |
| Bsa29I | ATCGAT | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 1 cut(s) | 899 |
| Bse1I | ACTGG | 2 cut(s) | 418, 873 |
| Bse3DI | GCAATG | 1 cut(s) | 993 |
| BseBI | CCWGG | 1 cut(s) | 465 |
| BseCI | ATCGAT | 1 cut(s) | 180 |
| BseDI | CCNNGG | 1 cut(s) | 899 |
| BseGI | GGATG | 2 cut(s) | 220, 997 |
| BseMI | GCAATG | 1 cut(s) | 993 |
| BseNI | ACTGG | 2 cut(s) | 418, 873 |
| BseXI | GCAGC | 2 cut(s) | 230, 233 |
| BseYI | CCCAGC | 2 cut(s) | 4, 200 |
| BsgI | GTGCAG | 1 cut(s) | 232 |
| BshFI | GGCC | 1 cut(s) | 468 |
| BshVI | ATCGAT | 1 cut(s) | 180 |
| BslFI | GGGAC | 1 cut(s) | 721 |
| BsmFI | GGGAC | 1 cut(s) | 721 |
| BsmI | GAATGC | 2 cut(s) | 445, 586 |
| BsnI | GGCC | 1 cut(s) | 468 |
| Bsp143I | GATC | 3 cut(s) | 697, 813, 903 |
| BspANI | GGCC | 1 cut(s) | 468 |
| BspDI | ATCGAT | 1 cut(s) | 180 |
| BspLI | GGNNCC | 1 cut(s) | 999 |
| BspPI | GGATC | 1 cut(s) | 911 |
| BsrDI | GCAATG | 1 cut(s) | 993 |
| BsrI | ACTGG | 2 cut(s) | 418, 873 |
| BssECI | CCNNGG | 1 cut(s) | 899 |
| BssMI | GATC | 3 cut(s) | 697, 813, 903 |
| BssNAI | GTATAC | 1 cut(s) | 361 |
| BssT1I | CCWWGG | 1 cut(s) | 899 |
| Bst1107I | GTATAC | 1 cut(s) | 361 |
| Bst2UI | CCWGG | 1 cut(s) | 465 |
| Bst4CI | ACNGT | 2 cut(s) | 238, 910 |
| BstC8I | GCNNGC | 1 cut(s) | 923 |
| BstDEI | CTNAG | 1 cut(s) | 654 |
| BstF5I | GGATG | 2 cut(s) | 220, 997 |
| BstKTI | GATC | 3 cut(s) | 700, 816, 906 |
| BstMBI | GATC | 3 cut(s) | 697, 813, 903 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 197, 803 |
| BstNI | CCWGG | 1 cut(s) | 465 |
| BstSCI | CCNGG | 1 cut(s) | 463 |
| BstV1I | GCAGC | 2 cut(s) | 230, 233 |
| BstV2I | GAAGAC | 1 cut(s) | 539 |
| BstX2I | RGATCY | 1 cut(s) | 697 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 292 |
| BstYI | RGATCY | 1 cut(s) | 697 |
| BstZ17I | GTATAC | 1 cut(s) | 361 |
| Bsu15I | ATCGAT | 1 cut(s) | 180 |
| BsuI | GTATCC | 1 cut(s) | 418 |
| BsuRI | GGCC | 1 cut(s) | 468 |
| BsuTUI | ATCGAT | 1 cut(s) | 180 |
| BtsCI | GGATG | 2 cut(s) | 220, 997 |
| BtsIMutI | CAGTG | 2 cut(s) | 740, 866 |
| Cac8I | GCNNGC | 1 cut(s) | 923 |
| Cfr13I | GGNCC | 1 cut(s) | 997 |
| ClaI | ATCGAT | 1 cut(s) | 180 |
| Csp6I | GTAC | 1 cut(s) | 621 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 975, 1010 |
| CviAII | CATG | 2 cut(s) | 915, 929 |
| CviQI | GTAC | 1 cut(s) | 621 |
| DdeI | CTNAG | 1 cut(s) | 654 |
| DpnI | GATC | 3 cut(s) | 699, 815, 905 |
| DpnII | GATC | 3 cut(s) | 697, 813, 903 |
| Eco130I | CCWWGG | 1 cut(s) | 899 |
| Eco32I | GATATC | 1 cut(s) | 88 |
| Eco47I | GGWCC | 1 cut(s) | 997 |
| EcoRII | CCWGG | 1 cut(s) | 463 |
| EcoRV | GATATC | 1 cut(s) | 88 |
| EcoT14I | CCWWGG | 1 cut(s) | 899 |
| EcoT22I | ATGCAT | 1 cut(s) | 502 |
| ErhI | CCWWGG | 1 cut(s) | 899 |
| FaeI | CATG | 2 cut(s) | 918, 932 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 336, 368 |
| FaqI | GGGAC | 1 cut(s) | 721 |
| FatI | CATG | 2 cut(s) | 914, 928 |
| FblI | GTMKAC | 1 cut(s) | 360 |
| Fnu4HI | GCNGC | 2 cut(s) | 244, 247 |
| FokI | GGATG | 2 cut(s) | 227, 1004 |
| Fsp4HI | GCNGC | 2 cut(s) | 244, 247 |
| FspBI | CTAG | 4 cut(s) | 105, 123, 561, 900 |
| GluI | GCNGC | 2 cut(s) | 244, 247 |
| GsaI | CCCAGC | 2 cut(s) | 8, 204 |
| GsuI | CTGGAG | 1 cut(s) | 314 |
| HaeIII | GGCC | 1 cut(s) | 468 |
| Hin1II | CATG | 2 cut(s) | 918, 932 |
| HinfI | GANTC | 2 cut(s) | 317, 1011 |
| HphI | GGTGA | 1 cut(s) | 323 |
| Hpy166II | GTNNAC | 2 cut(s) | 361, 997 |
| Hpy188I | TCNGA | 4 cut(s) | 384, 488, 945, 1016 |
| Hpy188III | TCNNGA | 3 cut(s) | 91, 701, 893 |
| Hpy8I | GTNNAC | 2 cut(s) | 361, 997 |
| HpyAV | CCTTC | 3 cut(s) | 64, 205, 586 |
| HpyCH4III | ACNGT | 2 cut(s) | 238, 910 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 197, 803 |
| HpyF3I | CTNAG | 1 cut(s) | 654 |
| Hsp92II | CATG | 2 cut(s) | 918, 932 |
| Kzo9I | GATC | 3 cut(s) | 697, 813, 903 |
| LmnI | GCTCC | 1 cut(s) | 643 |
| Lsp1109I | GCAGC | 2 cut(s) | 230, 233 |
| LweI | GCATC | 2 cut(s) | 450, 509 |
| MaeI | CTAG | 4 cut(s) | 105, 123, 561, 900 |
| MaeIII | GTNAC | 1 cut(s) | 35 |
| MalI | GATC | 3 cut(s) | 699, 815, 905 |
| MboI | GATC | 3 cut(s) | 697, 813, 903 |
| MboII | GAAGA | 9 cut(s) | 143, 544, 679, 707, 772, 799, 802, 823, 958 |
| MfeI | CAATTG | 1 cut(s) | 276 |
| MflI | RGATCY | 1 cut(s) | 697 |
| MluCI | AATT | 7 cut(s) | 276, 570, 763, 834, 886, 960, 974 |
| MmeI | TCCRAC | 1 cut(s) | 402 |
| MnlI | CCTC | 7 cut(s) | 18, 144, 189, 217, 538, 667, 841 |
| Mph1103I | ATGCAT | 1 cut(s) | 502 |
| MroXI | GAANNNNTTC | 1 cut(s) | 950 |
| MseI | TTAA | 3 cut(s) | 219, 254, 680 |
| MspR9I | CCNGG | 1 cut(s) | 465 |
| MunI | CAATTG | 1 cut(s) | 276 |
| Mva1269I | GAATGC | 2 cut(s) | 445, 586 |
| MvaI | CCWGG | 1 cut(s) | 465 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 197, 803 |
| NdeII | GATC | 3 cut(s) | 697, 813, 903 |
| NlaIII | CATG | 2 cut(s) | 918, 932 |
| NlaIV | GGNNCC | 1 cut(s) | 999 |
| NmuCI | GTSAC | 1 cut(s) | 35 |
| NsiI | ATGCAT | 1 cut(s) | 502 |
| PctI | GAATGC | 2 cut(s) | 445, 586 |
| PdmI | GAANNNNTTC | 1 cut(s) | 950 |
| PfeI | GAWTC | 2 cut(s) | 317, 1011 |
| PkrI | GCNGC | 2 cut(s) | 245, 248 |
| Psp6I | CCWGG | 1 cut(s) | 463 |
| PspFI | CCCAGC | 2 cut(s) | 4, 200 |
| PspGI | CCWGG | 1 cut(s) | 463 |
| PspN4I | GGNNCC | 1 cut(s) | 999 |
| PspPI | GGNCC | 1 cut(s) | 997 |
| PsuI | RGATCY | 1 cut(s) | 697 |
| RsaI | GTAC | 1 cut(s) | 622 |
| RsaNI | GTAC | 1 cut(s) | 621 |
| SaqAI | TTAA | 3 cut(s) | 219, 254, 680 |
| SatI | GCNGC | 2 cut(s) | 244, 247 |
| Sau3AI | GATC | 3 cut(s) | 697, 813, 903 |
| Sau96I | GGNCC | 1 cut(s) | 997 |
| ScrFI | CCNGG | 1 cut(s) | 465 |
| SetI | ASST | 9 cut(s) | 13, 169, 261, 354, 411, 562, 597, 660, 969 |
| SfaNI | GCATC | 2 cut(s) | 450, 509 |
| SinI | GGWCC | 1 cut(s) | 997 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| Sse9I | AATT | 7 cut(s) | 276, 570, 763, 834, 886, 960, 974 |
| SspMI | CTAG | 4 cut(s) | 105, 123, 561, 900 |
| StyD4I | CCNGG | 1 cut(s) | 463 |
| StyI | CCWWGG | 1 cut(s) | 899 |
| TaaI | ACNGT | 2 cut(s) | 238, 910 |
| TaqI | TCGA | 2 cut(s) | 180, 816 |
| TasI | AATT | 7 cut(s) | 276, 570, 763, 834, 886, 960, 974 |
| TfiI | GAWTC | 2 cut(s) | 317, 1011 |
| Tru1I | TTAA | 3 cut(s) | 219, 254, 680 |
| Tru9I | TTAA | 3 cut(s) | 219, 254, 680 |
| TscAI | CASTG | 2 cut(s) | 747, 873 |
| TseFI | GTSAC | 1 cut(s) | 35 |
| TseI | GCWGC | 2 cut(s) | 243, 246 |
| Tsp45I | GTSAC | 1 cut(s) | 35 |
| TspDTI | ATGAA | 1 cut(s) | 945 |
| TspRI | CASTG | 2 cut(s) | 747, 873 |
| VpaK11BI | GGWCC | 1 cut(s) | 997 |
| XapI | RAATTY | 4 cut(s) | 570, 763, 960, 974 |
| XmaJI | CCTAGG | 1 cut(s) | 899 |
| XmiI | GTMKAC | 1 cut(s) | 360 |
| XmnI | GAANNNNTTC | 1 cut(s) | 950 |
| XspI | CTAG | 4 cut(s) | 105, 123, 561, 900 |
| Zsp2I | ATGCAT | 1 cut(s) | 502 |