DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55300 AT5G55300 AT5G55300 |
| fragaria_vesca | FvH4_2g39170 |
| rosa_chinensis | RchiOBHm_Chr6g0301891 |
| rosa_laevigata | RLG00000011212 |
| rosa_multiflora | Rmu_sc0000407.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00166300 |
| rosa_rugosa | Rorug06G0310500 |
| rosa_samantha | Rh6AG422700 Rh6BG429400 Rh6CG435900 Rh6DG422900 |
| rosa_wichuraiana | Rw6G036610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 580 |
| AccB1I | GGYRCC | 2 cut(s) | 580, 945 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1283 |
| AccI | GTMKAC | 1 cut(s) | 514 |
| AccII | CGCG | 1 cut(s) | 143 |
| AciI | CCGC | 4 cut(s) | 141, 213, 1088, 1144 |
| AclWI | GGATC | 4 cut(s) | 399, 648, 1268, 2216 |
| AcsI | RAATTY | 5 cut(s) | 13, 1447, 1875, 2265, 2279 |
| AcuI | CTGAAG | 1 cut(s) | 405 |
| AfaI | GTAC | 3 cut(s) | 582, 1301, 1927 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 955, 1127, 1211, 1283 |
| AhlI | ACTAGT | 1 cut(s) | 683 |
| AjnI | CCWGG | 2 cut(s) | 1090, 1768 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 577, 609 |
| AleI | CACNNNNGTG | 1 cut(s) | 699 |
| Alw26I | GTCTC | 1 cut(s) | 843 |
| AlwI | GGATC | 4 cut(s) | 399, 648, 1268, 2216 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1196 |
| AoxI | GGCC | 3 cut(s) | 383, 1771, 2289 |
| ApeKI | GCWGC | 3 cut(s) | 1117, 1548, 1551 |
| ApoI | RAATTY | 5 cut(s) | 13, 1447, 1875, 2265, 2279 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2255 |
| Asp718I | GGTACC | 1 cut(s) | 580 |
| AspA2I | CCTAGG | 1 cut(s) | 2204 |
| AspLEI | GCGC | 1 cut(s) | 1445 |
| AspS9I | GGNCC | 2 cut(s) | 2289, 2302 |
| AsuC2I | CCSGG | 1 cut(s) | 1212 |
| AsuHPI | GGTGA | 2 cut(s) | 144, 1628 |
| AvaII | GGWCC | 1 cut(s) | 2302 |
| AvrII | CCTAGG | 1 cut(s) | 2204 |
| BanI | GGYRCC | 2 cut(s) | 580, 945 |
| BbsI | GAAGAC | 2 cut(s) | 411, 1844 |
| BbvI | GCAGC | 3 cut(s) | 1129, 1535, 1538 |
| BccI | CCATC | 5 cut(s) | 106, 856, 1043, 1433, 2092 |
| BceAI | ACGGC | 3 cut(s) | 95, 187, 2124 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1475, 1509 |
| BciT130I | CCWGG | 2 cut(s) | 1092, 1770 |
| BciVI | GTATCC | 1 cut(s) | 1723 |
| BclI | TGATCA | 2 cut(s) | 7, 169 |
| BcnI | CCSGG | 1 cut(s) | 1212 |
| BcoDI | GTCTC | 1 cut(s) | 843 |
| BcuI | ACTAGT | 1 cut(s) | 683 |
| BfmI | CTRYAG | 1 cut(s) | 511 |
| BfuI | GTATCC | 1 cut(s) | 1723 |
| BglII | AGATCT | 1 cut(s) | 2002 |
| BisI | GCNGC | 4 cut(s) | 141, 1118, 1549, 1552 |
| BlnI | CCTAGG | 1 cut(s) | 2204 |
| BlsI | GCNGC | 4 cut(s) | 142, 1119, 1550, 1553 |
| Bme1390I | CCNGG | 3 cut(s) | 1092, 1212, 1770 |
| Bme18I | GGWCC | 1 cut(s) | 2302 |
| BmgT120I | GGNCC | 2 cut(s) | 2289, 2302 |
| BmiI | GGNNCC | 5 cut(s) | 117, 292, 582, 947, 2304 |
| BmrFI | CCNGG | 3 cut(s) | 1092, 1212, 1770 |
| BmrI | ACTGGG | 1 cut(s) | 1184 |
| BmsI | GCATC | 8 cut(s) | 101, 218, 732, 901, 1174, 1755, 1814, 1876 |
| BmuI | ACTGGG | 1 cut(s) | 1184 |
| BpiI | GAAGAC | 2 cut(s) | 411, 1844 |
| BpmI | CTGGAG | 1 cut(s) | 1619 |
| BpuEI | CTTGAG | 1 cut(s) | 1348 |
| BpuMI | CCSGG | 1 cut(s) | 1212 |
| Bsa29I | ATCGAT | 1 cut(s) | 1485 |
| BsaAI | YACGTR | 1 cut(s) | 1303 |
| BsaBI | GATNNNNATC | 1 cut(s) | 330 |
| BsaJI | CCNNGG | 4 cut(s) | 636, 1102, 2204, 2292 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 955, 1127, 1211, 1283 |
| Bse1I | ACTGG | 4 cut(s) | 761, 1190, 1723, 2178 |
| Bse3DI | GCAATG | 1 cut(s) | 813 |
| Bse8I | GATNNNNATC | 1 cut(s) | 330 |
| BseBI | CCWGG | 2 cut(s) | 1092, 1770 |
| BseCI | ATCGAT | 1 cut(s) | 1485 |
| BseDI | CCNNGG | 4 cut(s) | 636, 1102, 2204, 2292 |
| BseJI | GATNNNNATC | 1 cut(s) | 330 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 955, 1127, 1211, 1283 |
| BseMI | GCAATG | 1 cut(s) | 813 |
| BseMII | CTCAG | 2 cut(s) | 402, 768 |
| BseNI | ACTGG | 4 cut(s) | 761, 1190, 1723, 2178 |
| BseRI | GAGGAG | 4 cut(s) | 800, 1019, 1037, 1076 |
| BseXI | GCAGC | 3 cut(s) | 1129, 1535, 1538 |
| BseYI | CCCAGC | 3 cut(s) | 1266, 1309, 1505 |
| BsgI | GTGCAG | 1 cut(s) | 1537 |
| Bsh1236I | CGCG | 1 cut(s) | 143 |
| BshFI | GGCC | 3 cut(s) | 385, 1773, 2291 |
| BshNI | GGYRCC | 2 cut(s) | 580, 945 |
| BshVI | ATCGAT | 1 cut(s) | 1485 |
| BsiSI | CCGG | 2 cut(s) | 230, 1212 |
| BslFI | GGGAC | 1 cut(s) | 2026 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 955, 1127, 1211, 1283 |
| BsmAI | GTCTC | 1 cut(s) | 843 |
| BsmFI | GGGAC | 1 cut(s) | 2026 |
| BsmI | GAATGC | 2 cut(s) | 1205, 1750 |
| BsnI | GGCC | 3 cut(s) | 385, 1773, 2291 |
| Bsp19I | CCATGG | 1 cut(s) | 2292 |
| BspACI | CCGC | 4 cut(s) | 141, 213, 1088, 1144 |
| BspANI | GGCC | 3 cut(s) | 385, 1773, 2291 |
| BspCNI | CTCAG | 2 cut(s) | 403, 769 |
| BspDI | ATCGAT | 1 cut(s) | 1485 |
| BspFNI | CGCG | 1 cut(s) | 143 |
| BspHI | TCATGA | 1 cut(s) | 279 |
| BspLI | GGNNCC | 5 cut(s) | 117, 292, 582, 947, 2304 |
| BspPI | GGATC | 4 cut(s) | 399, 648, 1268, 2216 |
| BspQI | GCTCTTC | 1 cut(s) | 882 |
| BspT107I | GGYRCC | 2 cut(s) | 580, 945 |
| BsrDI | GCAATG | 1 cut(s) | 813 |
| BsrI | ACTGG | 4 cut(s) | 761, 1190, 1723, 2178 |
| BssECI | CCNNGG | 4 cut(s) | 636, 1102, 2204, 2292 |
| BssT1I | CCWWGG | 3 cut(s) | 636, 2204, 2292 |
| Bst2UI | CCWGG | 2 cut(s) | 1092, 1770 |
| Bst4CI | ACNGT | 7 cut(s) | 183, 267, 512, 1125, 1249, 1543, 2215 |
| Bst6I | CTCTTC | 3 cut(s) | 231, 882, 978 |
| BstBAI | YACGTR | 1 cut(s) | 1303 |
| BstC8I | GCNNGC | 3 cut(s) | 1115, 1264, 2228 |
| BstDEI | CTNAG | 5 cut(s) | 378, 411, 426, 777, 1959 |
| BstDSI | CCRYGG | 1 cut(s) | 2292 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 953 |
| BstFNI | CGCG | 1 cut(s) | 143 |
| BstHHI | GCGC | 1 cut(s) | 1445 |
| BstMAI | GTCTC | 1 cut(s) | 843 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 98, 1502, 2108 |
| BstNI | CCWGG | 2 cut(s) | 1092, 1770 |
| BstNSI | RCATGY | 1 cut(s) | 896 |
| BstSCI | CCNGG | 3 cut(s) | 1090, 1210, 1768 |
| BstSFI | CTRYAG | 1 cut(s) | 511 |
| BstSNI | TACGTA | 1 cut(s) | 1303 |
| BstUI | CGCG | 1 cut(s) | 143 |
| BstV1I | GCAGC | 3 cut(s) | 1129, 1535, 1538 |
| BstV2I | GAAGAC | 2 cut(s) | 411, 1844 |
| BstX2I | RGATCY | 1 cut(s) | 2002 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1597, 2299 |
| BstYI | RGATCY | 1 cut(s) | 2002 |
| Bsu15I | ATCGAT | 1 cut(s) | 1485 |
| BsuI | GTATCC | 1 cut(s) | 1723 |
| BsuRI | GGCC | 3 cut(s) | 385, 1773, 2291 |
| BsuTUI | ATCGAT | 1 cut(s) | 1485 |
| BtgI | CCRYGG | 1 cut(s) | 2292 |
| BtgZI | GCGATG | 1 cut(s) | 543 |
| BtsI | GCAGTG | 1 cut(s) | 87 |
| BtsIMutI | CAGTG | 3 cut(s) | 87, 2045, 2171 |
| Cac8I | GCNNGC | 3 cut(s) | 1115, 1264, 2228 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1196 |
| CciI | TCATGA | 1 cut(s) | 279 |
| CfoI | GCGC | 1 cut(s) | 1445 |
| Cfr13I | GGNCC | 2 cut(s) | 2289, 2302 |
| ClaI | ATCGAT | 1 cut(s) | 1485 |
| Csp6I | GTAC | 3 cut(s) | 581, 1300, 1926 |
| CviQI | GTAC | 3 cut(s) | 581, 1300, 1926 |
| DdeI | CTNAG | 5 cut(s) | 378, 411, 426, 777, 1959 |
| DraI | TTTAAA | 2 cut(s) | 357, 1452 |
| Eam1104I | CTCTTC | 3 cut(s) | 231, 882, 978 |
| EarI | CTCTTC | 3 cut(s) | 231, 882, 978 |
| EciI | GGCGGA | 1 cut(s) | 1159 |
| Eco105I | TACGTA | 1 cut(s) | 1303 |
| Eco130I | CCWWGG | 3 cut(s) | 636, 2204, 2292 |
| Eco147I | AGGCCT | 1 cut(s) | 385 |
| Eco32I | GATATC | 1 cut(s) | 1393 |
| Eco47I | GGWCC | 1 cut(s) | 2302 |
| Eco57I | CTGAAG | 1 cut(s) | 405 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 953 |
| EcoRI | GAATTC | 1 cut(s) | 13 |
| EcoRII | CCWGG | 2 cut(s) | 1090, 1768 |
| EcoRV | GATATC | 1 cut(s) | 1393 |
| EcoT14I | CCWWGG | 3 cut(s) | 636, 2204, 2292 |
| EcoT22I | ATGCAT | 1 cut(s) | 1807 |
| ErhI | CCWWGG | 3 cut(s) | 636, 2204, 2292 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1641, 1673, 2054, 2086 |
| FaqI | GGGAC | 1 cut(s) | 2026 |
| FbaI | TGATCA | 2 cut(s) | 7, 169 |
| FblI | GTMKAC | 1 cut(s) | 514 |
| Fnu4HI | GCNGC | 4 cut(s) | 141, 1118, 1549, 1552 |
| Fsp4HI | GCNGC | 4 cut(s) | 141, 1118, 1549, 1552 |
| GlaI | GCGC | 1 cut(s) | 1444 |
| GluI | GCNGC | 4 cut(s) | 141, 1118, 1549, 1552 |
| GsaI | CCCAGC | 3 cut(s) | 1270, 1313, 1509 |
| GsuI | CTGGAG | 1 cut(s) | 1619 |
| HaeIII | GGCC | 3 cut(s) | 385, 1773, 2291 |
| HapII | CCGG | 2 cut(s) | 230, 1212 |
| HhaI | GCGC | 1 cut(s) | 1445 |
| Hin6I | GCGC | 1 cut(s) | 1443 |
| HinP1I | GCGC | 1 cut(s) | 1443 |
| HincII | GTYRAC | 1 cut(s) | 550 |
| HindII | GTYRAC | 1 cut(s) | 550 |
| HinfI | GANTC | 6 cut(s) | 34, 248, 314, 843, 1622, 2316 |
| HpaI | GTTAAC | 1 cut(s) | 550 |
| HpaII | CCGG | 2 cut(s) | 230, 1212 |
| HphI | GGTGA | 2 cut(s) | 144, 1628 |
| Hpy166II | GTNNAC | 6 cut(s) | 515, 550, 681, 694, 1666, 2302 |
| Hpy188III | TCNNGA | 8 cut(s) | 280, 389, 859, 1128, 1196, 1396, 2006, 2198 |
| Hpy8I | GTNNAC | 6 cut(s) | 515, 550, 681, 694, 1666, 2302 |
| HpyAV | CCTTC | 8 cut(s) | 277, 949, 985, 994, 1125, 1369, 1510, 1891 |
| HpyCH4III | ACNGT | 7 cut(s) | 183, 267, 512, 1125, 1249, 1543, 2215 |
| HpyCH4IV | ACGT | 1 cut(s) | 1302 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 98, 1502, 2108 |
| HpyF3I | CTNAG | 5 cut(s) | 378, 411, 426, 777, 1959 |
| HpySE526I | ACGT | 1 cut(s) | 1302 |
| HspAI | GCGC | 1 cut(s) | 1443 |
| KpnI | GGTACC | 1 cut(s) | 584 |
| Ksp22I | TGATCA | 2 cut(s) | 7, 169 |
| KspAI | GTTAAC | 1 cut(s) | 550 |
| LguI | GCTCTTC | 1 cut(s) | 882 |
| LmnI | GCTCC | 4 cut(s) | 121, 232, 870, 1948 |
| Lsp1109I | GCAGC | 3 cut(s) | 1129, 1535, 1538 |
| LweI | GCATC | 8 cut(s) | 101, 218, 732, 901, 1174, 1755, 1814, 1876 |
| MaeII | ACGT | 1 cut(s) | 1302 |
| MaeIII | GTNAC | 1 cut(s) | 1340 |
| MfeI | CAATTG | 1 cut(s) | 1581 |
| MflI | RGATCY | 1 cut(s) | 2002 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MmeI | TCCRAC | 2 cut(s) | 1202, 1707 |
| Mph1103I | ATGCAT | 1 cut(s) | 1807 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2255 |
| MseI | TTAA | 8 cut(s) | 122, 356, 549, 1013, 1451, 1524, 1559, 1985 |
| MslI | CAYNNNNRTG | 3 cut(s) | 51, 699, 2297 |
| MspI | CCGG | 2 cut(s) | 230, 1212 |
| MspR9I | CCNGG | 3 cut(s) | 1092, 1212, 1770 |
| MunI | CAATTG | 1 cut(s) | 1581 |
| Mva1269I | GAATGC | 2 cut(s) | 1205, 1750 |
| MvaI | CCWGG | 2 cut(s) | 1092, 1770 |
| MvnI | CGCG | 1 cut(s) | 143 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 98, 1502, 2108 |
| NciI | CCSGG | 1 cut(s) | 1212 |
| NcoI | CCATGG | 1 cut(s) | 2292 |
| NlaIV | GGNNCC | 5 cut(s) | 117, 292, 582, 947, 2304 |
| NmuCI | GTSAC | 1 cut(s) | 1340 |
| NsiI | ATGCAT | 1 cut(s) | 1807 |
| NspI | RCATGY | 1 cut(s) | 896 |
| OliI | CACNNNNGTG | 1 cut(s) | 699 |
| PagI | TCATGA | 1 cut(s) | 279 |
| PceI | AGGCCT | 1 cut(s) | 385 |
| PciSI | GCTCTTC | 1 cut(s) | 882 |
| PctI | GAATGC | 2 cut(s) | 1205, 1750 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2255 |
| PfeI | GAWTC | 5 cut(s) | 248, 314, 843, 1622, 2316 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1283 |
| PkrI | GCNGC | 4 cut(s) | 142, 1119, 1550, 1553 |
| PleI | GAGTC | 1 cut(s) | 42 |
| PpsI | GAGTC | 1 cut(s) | 42 |
| Ppu21I | YACGTR | 1 cut(s) | 1303 |
| Psp6I | CCWGG | 2 cut(s) | 1090, 1768 |
| PspFI | CCCAGC | 3 cut(s) | 1266, 1309, 1505 |
| PspGI | CCWGG | 2 cut(s) | 1090, 1768 |
| PspN4I | GGNNCC | 5 cut(s) | 117, 292, 582, 947, 2304 |
| PspPI | GGNCC | 2 cut(s) | 2289, 2302 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1196 |
| PsuI | RGATCY | 1 cut(s) | 2002 |
| RsaI | GTAC | 3 cut(s) | 582, 1301, 1927 |
| RsaNI | GTAC | 3 cut(s) | 581, 1300, 1926 |
| RseI | CAYNNNNRTG | 3 cut(s) | 51, 699, 2297 |
| SapI | GCTCTTC | 1 cut(s) | 882 |
| SaqAI | TTAA | 8 cut(s) | 122, 356, 549, 1013, 1451, 1524, 1559, 1985 |
| SatI | GCNGC | 4 cut(s) | 141, 1118, 1549, 1552 |
| Sau96I | GGNCC | 2 cut(s) | 2289, 2302 |
| SchI | GAGTC | 1 cut(s) | 43 |
| ScrFI | CCNGG | 3 cut(s) | 1092, 1212, 1770 |
| SfaNI | GCATC | 8 cut(s) | 101, 218, 732, 901, 1174, 1755, 1814, 1876 |
| SfcI | CTRYAG | 1 cut(s) | 511 |
| SinI | GGWCC | 1 cut(s) | 2302 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 51, 699, 2297 |
| SmlI | CTYRAG | 1 cut(s) | 1327 |
| SmoI | CTYRAG | 1 cut(s) | 1327 |
| SnaBI | TACGTA | 1 cut(s) | 1303 |
| SpeI | ACTAGT | 1 cut(s) | 683 |
| SseBI | AGGCCT | 1 cut(s) | 385 |
| SsiI | CCGC | 4 cut(s) | 141, 213, 1088, 1144 |
| StuI | AGGCCT | 1 cut(s) | 385 |
| StyD4I | CCNGG | 3 cut(s) | 1090, 1210, 1768 |
| StyI | CCWWGG | 3 cut(s) | 636, 2204, 2292 |
| TaaI | ACNGT | 7 cut(s) | 183, 267, 512, 1125, 1249, 1543, 2215 |
| TaiI | ACGT | 1 cut(s) | 1305 |
| TaqI | TCGA | 2 cut(s) | 1485, 2121 |
| TauI | GCSGC | 1 cut(s) | 143 |
| TfiI | GAWTC | 5 cut(s) | 248, 314, 843, 1622, 2316 |
| Tru1I | TTAA | 8 cut(s) | 122, 356, 549, 1013, 1451, 1524, 1559, 1985 |
| Tru9I | TTAA | 8 cut(s) | 122, 356, 549, 1013, 1451, 1524, 1559, 1985 |
| TscAI | CASTG | 3 cut(s) | 94, 2052, 2178 |
| TseFI | GTSAC | 1 cut(s) | 1340 |
| TseI | GCWGC | 3 cut(s) | 1117, 1548, 1551 |
| Tsp45I | GTSAC | 1 cut(s) | 1340 |
| TspRI | CASTG | 3 cut(s) | 94, 2052, 2178 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1283 |
| VpaK11BI | GGWCC | 1 cut(s) | 2302 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 953 |
| XapI | RAATTY | 5 cut(s) | 13, 1447, 1875, 2265, 2279 |
| XceI | RCATGY | 1 cut(s) | 896 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 936 |
| XmaJI | CCTAGG | 1 cut(s) | 2204 |
| XmiI | GTMKAC | 1 cut(s) | 514 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2255 |
| Zsp2I | ATGCAT | 1 cut(s) | 1807 |