FvH4_2g39430

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016775
Physical Location & Seq
Reverse (-)
28326154 .. 28327821
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39430.t1

Sequence Viewer

Length: 1293 bp
ATGTGGTGCTCAAAGGAAAACTTGCCGTCCCCACAAACCATCTTCTCGGTGGCCGCCTCCGTCATGCTCCTCAAAAGCGTCTCAAACGACCTCGTCCCCGATGCCGTCCACTCTTACGTCTCCTCCCGCCTTAAAAAGCTCTCCTGGCAACTCACCGTCATCATCGACGAGTTCGACGGCCTCACCCCTAACCAGATGTTCGAGGCTGCCAACCTCTACTTGGGCACCGAGCTCTCCTCCAAAACGCAAAGAATCAAGGTCAACAAACCCGAAAAGGAGAAGCAGCTGCAGGTCAATATAGACAGGAACCAAGAGCTCGTTGATTACTTCAATGGCGTCAAGTTCAAGTGGGTTATGGTGACCGAAAAGCCAGCGGCGAACAAACGTGACCAGGGATCACAGTCGGAGGTTCGACACTTCGAGATCAGCTTCCATAAGAAGCATAGGGACATGGTGCTCAGCTCTTACCTGCCCTATGTCTTGAAGAAGCATGGAGAAATCAAGGAGGAGAGAAAGATGGTGAAGCTTCATACCATTGATTACAATGGCACTGACTATTGGGGATCCATTAACCTTGATCACCCTGCGAGTTTTGACACCATGGCAATGGAACCGGAGATGAAGAAGACATTAATTGAGGACCTAGATAAGTTTAGGGAGAGGAAGGAGTATTATAAGAGAGTAGGCAAGGCTTGGAAACGTGGGTATTTGCTGTACGGACCACCCGGCACTGGAAAATCAAGCTTGGTTGCAGCCATGGCTAATTATCTCAAGTTTGATATTTTTGACTTGGATCTGAAGGAGGTTCAATGCAATTCTGATCTGAGAAGGTTGCTGATCGGCACCAAAAGCAGATCGATATTGGTGATCGAGGATATTGATTGCTCGGTTGAGTTGCAGAACAGAGACTCTGATCAGAATGAACCCAAAACTGTTGAGGATGACAAGGTGAGCCTCTCTGGTCTACTGAACTTCATTGATGGATTGTGGTCAAGCTGTGGAGAGGAGAGAATCATTGTGTTCACAACAAATCACAAGGACCGGCTTGATCAGGCCTTGCTCCGCCCTGGTCGGATGGACCTGCACCTGCACATGTCCTACTGCACCTTCAGTGGCTTCAAGACATTAGCATACAATTACTTGCAGATTAAAGAGCACCCGCTTTTTACAGAGATTGAAGACTTAATAAATCACAAGGAAGCTACACCTGCTGAAGTTGCAGGGGAGCTAATGAAGAGTGATGATGCTGAAGTCTCCCTTCAAGGTCTTACCAAATTCCTCCAAAGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

431

Amino Acids

49.47

Weight (kDa)

6.34

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 33 - 120 3.8e-23 Domain associated at C-terminal with AAA
AAA PF00004 236 - 366 7.7e-20 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 368 - 429 8.2e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39430
malus_domestica MD08G1026600.v1.1 MD08G1026700.v1.1
prunus_persica Prupe.1G375300_v2.0.a1 Prupe.1G375300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301551
rosa_laevigata RLG00000011245
rosa_multiflora Rmu_ssc0000452.1_g000001
rosa_roxburghii Rroxscaffold_7G00166660
rosa_rugosa Rorug06G0306000
rosa_samantha Rh6AG419700 Rh6BG425700 Rh6DG419100
rosa_wichuraiana Rw6G036280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AarI CACCTGC 2 cut(s) 1095, 1216
Acc36I ACCTGC 5 cut(s) 280, 477, 1089, 1095, 1216
AccB1I GGYRCC 2 cut(s) 224, 842
AccI GTMKAC 1 cut(s) 964
AciI CCGC 5 cut(s) 54, 127, 374, 1063, 1160
AclWI GGATC 4 cut(s) 403, 558, 571, 801
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 1274
AcuI CTGAAG 4 cut(s) 818, 1093, 1233, 1269
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 1 cut(s) 716
AfiI CCNNNNNNNGG 2 cut(s) 220, 731
AflIII ACRYGT 1 cut(s) 1092
AgsI TTSAA 7 cut(s) 331, 346, 484, 809, 1120, 1178, 1262
AjnI CCWGG 3 cut(s) 143, 390, 1066
Alw21I GWGCWC 5 cut(s) 11, 234, 318, 459, 1158
Alw26I GTCTC 4 cut(s) 85, 124, 900, 1258
AlwI GGATC 4 cut(s) 403, 558, 571, 801
AoxI GGCC 3 cut(s) 51, 178, 1053
ApeKI GCWGC 4 cut(s) 206, 283, 286, 752
ApoI RAATTY 1 cut(s) 1274
AseI ATTAAT 1 cut(s) 632
AspS9I GGNCC 4 cut(s) 640, 719, 1039, 1078
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 7 cut(s) 145, 175, 370, 532, 572, 877, 961
AvaII GGWCC 4 cut(s) 640, 719, 1039, 1078
BaeGI GKGCMC 1 cut(s) 227
BamHI GGATCC 1 cut(s) 563
BanI GGYRCC 2 cut(s) 224, 842
BanII GRGCYC 2 cut(s) 234, 318
BbsI GAAGAC 2 cut(s) 632, 1185
Bbv12I GWGCWC 5 cut(s) 11, 234, 318, 459, 1158
BbvI GCAGC 4 cut(s) 193, 273, 295, 764
BccI CCATC 4 cut(s) 47, 511, 974, 1069
BceAI ACGGC 3 cut(s) 10, 89, 193
BciT130I CCWGG 3 cut(s) 145, 392, 1068
BclI TGATCA 3 cut(s) 577, 913, 1048
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 4 cut(s) 85, 124, 900, 1258
BfaI CTAG 1 cut(s) 644
BfmI CTRYAG 1 cut(s) 287
BfuAI ACCTGC 5 cut(s) 280, 477, 1089, 1095, 1216
BisI GCNGC 6 cut(s) 54, 207, 284, 287, 375, 753
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 6 cut(s) 55, 208, 285, 288, 376, 754
Bme1390I CCNGG 4 cut(s) 145, 392, 726, 1068
Bme18I GGWCC 4 cut(s) 640, 719, 1039, 1078
BmgT120I GGNCC 4 cut(s) 640, 719, 1039, 1078
BmiI GGNNCC 5 cut(s) 226, 308, 565, 612, 844
BmrFI CCNGG 4 cut(s) 145, 392, 726, 1068
BmsI GCATC 2 cut(s) 91, 1234
BpiI GAAGAC 2 cut(s) 632, 1185
BplI GAGNNNNNCTC 2 cut(s) 221, 253
Bpu1102I GCTNAGC 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 726
Bsa29I ATCGAT 1 cut(s) 857
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 391, 600, 756, 1066
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 731
Bse118I RCCGGY 1 cut(s) 1041
Bse1I ACTGG 1 cut(s) 736
Bse3DI GCAATG 1 cut(s) 612
BseBI CCWGG 3 cut(s) 145, 392, 1068
BseCI ATCGAT 1 cut(s) 857
BseDI CCNNGG 4 cut(s) 391, 600, 756, 1066
BseGI GGATG 2 cut(s) 946, 1080
BseLI CCNNNNNNNGG 2 cut(s) 220, 731
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 472, 815
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 5 cut(s) 59, 112, 226, 521, 1019
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 4 cut(s) 193, 273, 295, 764
BsgI GTGCAG 3 cut(s) 1067, 1073, 1087
BshFI GGCC 3 cut(s) 53, 180, 1055
BshNI GGYRCC 2 cut(s) 224, 842
BshVI ATCGAT 1 cut(s) 857
BsiHKAI GWGCWC 5 cut(s) 11, 234, 318, 459, 1158
BsiSI CCGG 3 cut(s) 614, 726, 1042
BslFI GGGAC 3 cut(s) 13, 80, 461
BslI CCNNNNNNNGG 2 cut(s) 220, 731
BsmAI GTCTC 4 cut(s) 85, 124, 900, 1258
BsmBI CGTCTC 2 cut(s) 85, 124
BsmFI GGGAC 3 cut(s) 13, 80, 461
BsnI GGCC 3 cut(s) 53, 180, 1055
Bsp1286I GDGCHC 6 cut(s) 11, 227, 234, 318, 459, 1158
Bsp1720I GCTNAGC 1 cut(s) 458
Bsp19I CCATGG 2 cut(s) 600, 756
BspACI CCGC 5 cut(s) 54, 127, 374, 1063, 1160
BspANI GGCC 3 cut(s) 53, 180, 1055
BspCNI CTCAG 2 cut(s) 471, 816
BspDI ATCGAT 1 cut(s) 857
BspLI GGNNCC 5 cut(s) 226, 308, 565, 612, 844
BspMAI CTGCAG 1 cut(s) 291
BspMI ACCTGC 5 cut(s) 280, 477, 1089, 1095, 1216
BspPI GGATC 4 cut(s) 403, 558, 571, 801
BspT107I GGYRCC 2 cut(s) 224, 842
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 1041
BsrI ACTGG 1 cut(s) 736
BssAI RCCGGY 1 cut(s) 1041
BssECI CCNNGG 4 cut(s) 391, 600, 756, 1066
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 2 cut(s) 600, 756
Bst2UI CCWGG 3 cut(s) 145, 392, 1068
Bst4CI ACNGT 3 cut(s) 157, 402, 934
Bst6I CTCTTC 1 cut(s) 1229
BstACI GRCGYC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 458, 824
BstDSI CCRYGG 2 cut(s) 600, 756
BstEII GGTNACC 1 cut(s) 358
BstF5I GGATG 2 cut(s) 946, 1080
BstMAI GTCTC 4 cut(s) 85, 124, 900, 1258
BstMWI GCNNNNNNNGC 5 cut(s) 145, 758, 849, 1208, 1217
BstNI CCWGG 3 cut(s) 145, 392, 1068
BstNSI RCATGY 1 cut(s) 1096
BstPI GGTNACC 1 cut(s) 358
BstSCI CCNGG 4 cut(s) 143, 390, 724, 1066
BstSFI CTRYAG 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 193, 273, 295, 764
BstV2I GAAGAC 2 cut(s) 632, 1185
BstX2I RGATCY 2 cut(s) 563, 793
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 2 cut(s) 563, 793
Bsu15I ATCGAT 1 cut(s) 857
BsuRI GGCC 3 cut(s) 53, 180, 1055
BsuTUI ATCGAT 1 cut(s) 857
BtgI CCRYGG 2 cut(s) 600, 756
BtsCI GGATG 2 cut(s) 946, 1080
BtsIMutI CAGTG 3 cut(s) 549, 729, 1117
BveI ACCTGC 5 cut(s) 280, 477, 1089, 1095, 1216
Cac8I GCNNGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 1041
Cfr13I GGNCC 4 cut(s) 640, 719, 1039, 1078
ClaI ATCGAT 1 cut(s) 857
CseI GACGC 2 cut(s) 67, 325
Csp6I GTAC 1 cut(s) 715
CviAII CATG 6 cut(s) 64, 451, 491, 601, 757, 1093
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 2 cut(s) 458, 824
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 1229
EarI CTCTTC 1 cut(s) 1229
EciI GGCGGA 1 cut(s) 1052
Ecl136II GAGCTC 2 cut(s) 232, 316
Eco130I CCWWGG 2 cut(s) 600, 756
Eco147I AGGCCT 1 cut(s) 1055
Eco24I GRGCYC 2 cut(s) 234, 318
Eco47I GGWCC 4 cut(s) 640, 719, 1039, 1078
Eco53kI GAGCTC 2 cut(s) 232, 316
Eco57I CTGAAG 4 cut(s) 818, 1093, 1233, 1269
Eco91I GGTNACC 1 cut(s) 358
EcoICRI GAGCTC 2 cut(s) 232, 316
EcoO109I RGGNCCY 1 cut(s) 640
EcoO65I GGTNACC 1 cut(s) 358
EcoRII CCWGG 3 cut(s) 143, 390, 1066
EcoT14I CCWWGG 2 cut(s) 600, 756
EcoT38I GRGCYC 2 cut(s) 234, 318
ErhI CCWWGG 2 cut(s) 600, 756
Esp3I CGTCTC 2 cut(s) 85, 124
FaeI CATG 6 cut(s) 67, 454, 494, 604, 760, 1096
FalI AAGNNNNNCTT 3 cut(s) 37, 1242, 1274
FaqI GGGAC 3 cut(s) 13, 80, 461
FatI CATG 6 cut(s) 63, 450, 490, 600, 756, 1092
FauI CCCGC 2 cut(s) 134, 1167
FbaI TGATCA 3 cut(s) 577, 913, 1048
FblI GTMKAC 1 cut(s) 964
Fnu4HI GCNGC 6 cut(s) 54, 207, 284, 287, 375, 753
FokI GGATG 2 cut(s) 953, 1087
FriOI GRGCYC 2 cut(s) 234, 318
Fsp4HI GCNGC 6 cut(s) 54, 207, 284, 287, 375, 753
FspBI CTAG 1 cut(s) 644
GluI GCNGC 6 cut(s) 54, 207, 284, 287, 375, 753
HaeIII GGCC 3 cut(s) 53, 180, 1055
HapII CCGG 3 cut(s) 614, 726, 1042
HgaI GACGC 2 cut(s) 67, 325
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 6 cut(s) 67, 454, 494, 604, 760, 1096
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 2 cut(s) 524, 742
HinfI GANTC 3 cut(s) 252, 908, 1011
HpaII CCGG 3 cut(s) 614, 726, 1042
HphI GGTGA 7 cut(s) 145, 175, 370, 532, 572, 877, 961
Hpy166II GTNNAC 4 cut(s) 109, 262, 965, 1023
Hpy188I TCNGA 7 cut(s) 406, 798, 820, 825, 913, 918, 1074
Hpy188III TCNNGA 3 cut(s) 421, 481, 1120
Hpy8I GTNNAC 4 cut(s) 109, 262, 965, 1023
Hpy99I CGWCG 2 cut(s) 170, 179
HpyAV CCTTC 5 cut(s) 658, 793, 822, 1117, 1268
HpyCH4III ACNGT 3 cut(s) 157, 402, 934
HpyCH4IV ACGT 3 cut(s) 117, 385, 700
HpyCH4V TGCA 9 cut(s) 289, 752, 813, 898, 1084, 1090, 1104, 1144, 1220
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 758, 849, 1208, 1217
HpyF3I CTNAG 2 cut(s) 458, 824
HpySE526I ACGT 3 cut(s) 117, 385, 700
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 6 cut(s) 67, 454, 494, 604, 760, 1096
Ksp22I TGATCA 3 cut(s) 577, 913, 1048
LmnI GCTCC 3 cut(s) 72, 1065, 1225
Lsp1109I GCAGC 4 cut(s) 193, 273, 295, 764
LweI GCATC 2 cut(s) 91, 1234
MaeI CTAG 1 cut(s) 644
MaeII ACGT 3 cut(s) 117, 385, 700
MaeIII GTNAC 2 cut(s) 358, 386
MboII GAAGA 6 cut(s) 34, 496, 634, 637, 1190, 1246
MflI RGATCY 2 cut(s) 563, 793
MhlI GDGCHC 6 cut(s) 11, 227, 234, 318, 459, 1158
MluCI AATT 5 cut(s) 633, 763, 814, 1135, 1274
MlyI GAGTC 1 cut(s) 902
MmeI TCCRAC 2 cut(s) 384, 1052
MseI TTAA 5 cut(s) 132, 570, 632, 1149, 1184
MslI CAYNNNNRTG 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 286, 374
MspI CCGG 3 cut(s) 614, 726, 1042
MspR9I CCNGG 4 cut(s) 145, 392, 726, 1068
MvaI CCWGG 3 cut(s) 145, 392, 1068
MwoI GCNNNNNNNGC 5 cut(s) 145, 758, 849, 1208, 1217
NciI CCSGG 1 cut(s) 726
NcoI CCATGG 2 cut(s) 600, 756
NlaIII CATG 6 cut(s) 67, 454, 494, 604, 760, 1096
NlaIV GGNNCC 5 cut(s) 226, 308, 565, 612, 844
NmuCI GTSAC 2 cut(s) 358, 386
NspI RCATGY 1 cut(s) 1096
PaqCI CACCTGC 2 cut(s) 1095, 1216
PceI AGGCCT 1 cut(s) 1055
PciI ACATGT 1 cut(s) 1092
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 2 cut(s) 252, 1011
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 6 cut(s) 55, 208, 285, 288, 376, 754
PleI GAGTC 1 cut(s) 902
PpsI GAGTC 1 cut(s) 902
PpuMI RGGWCCY 1 cut(s) 640
PscI ACATGT 1 cut(s) 1092
PshBI ATTAAT 1 cut(s) 632
PsiI TTATAA 1 cut(s) 675
Psp124BI GAGCTC 2 cut(s) 234, 318
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 3 cut(s) 143, 390, 1066
PspEI GGTNACC 1 cut(s) 358
PspGI CCWGG 3 cut(s) 143, 390, 1066
PspN4I GGNNCC 5 cut(s) 226, 308, 565, 612, 844
PspPI GGNCC 4 cut(s) 640, 719, 1039, 1078
PspPPI RGGWCCY 1 cut(s) 640
PstI CTGCAG 1 cut(s) 291
PsuI RGATCY 2 cut(s) 563, 793
PsyI GACNNNGTC 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
RseI CAYNNNNRTG 1 cut(s) 605
SacI GAGCTC 2 cut(s) 234, 318
SaqAI TTAA 5 cut(s) 132, 570, 632, 1149, 1184
SatI GCNGC 6 cut(s) 54, 207, 284, 287, 375, 753
Sau96I GGNCC 4 cut(s) 640, 719, 1039, 1078
SchI GAGTC 1 cut(s) 902
ScrFI CCNGG 4 cut(s) 145, 392, 726, 1068
SduI GDGCHC 6 cut(s) 11, 227, 234, 318, 459, 1158
SfaNI GCATC 2 cut(s) 91, 1234
SfcI CTRYAG 1 cut(s) 287
SinI GGWCC 4 cut(s) 640, 719, 1039, 1078
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 5 cut(s) 633, 763, 814, 1135, 1274
SseBI AGGCCT 1 cut(s) 1055
SsiI CCGC 5 cut(s) 54, 127, 374, 1063, 1160
SspMI CTAG 1 cut(s) 644
SstI GAGCTC 2 cut(s) 234, 318
StuI AGGCCT 1 cut(s) 1055
StyD4I CCNGG 4 cut(s) 143, 390, 724, 1066
StyI CCWWGG 2 cut(s) 600, 756
TaaI ACNGT 3 cut(s) 157, 402, 934
TaiI ACGT 3 cut(s) 120, 388, 703
TaqI TCGA 7 cut(s) 165, 174, 201, 412, 420, 857, 870
TaqII GACCGA 1 cut(s) 377
TasI AATT 5 cut(s) 633, 763, 814, 1135, 1274
TauI GCSGC 2 cut(s) 56, 377
TfiI GAWTC 2 cut(s) 252, 1011
Tru1I TTAA 5 cut(s) 132, 570, 632, 1149, 1184
Tru9I TTAA 5 cut(s) 132, 570, 632, 1149, 1184
TscAI CASTG 3 cut(s) 556, 736, 1117
TseFI GTSAC 2 cut(s) 358, 386
TseI GCWGC 4 cut(s) 206, 283, 286, 752
Tsp45I GTSAC 2 cut(s) 358, 386
TspDTI ATGAA 5 cut(s) 518, 635, 936, 964, 1247
TspGWI ACGGA 2 cut(s) 49, 732
TspRI CASTG 3 cut(s) 556, 736, 1117
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 4 cut(s) 640, 719, 1039, 1078
VspI ATTAAT 1 cut(s) 632
XapI RAATTY 1 cut(s) 1274
XceI RCATGY 1 cut(s) 1096
XcmI CCANNNNNNNNNTGG 2 cut(s) 46, 217
XmiI GTMKAC 1 cut(s) 964
XspI CTAG 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.