RchiOBHm_Chr6g0301551

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016775
Physical Location & Seq
Forward (+)
61912595 .. 61914264
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27084

Sequence Viewer

Length: 1317 bp
ATGTGGTGCTCAAAGGAAGACTTGCCGTCCCCAAAAACCATTCTCTCGGTGGCGGCCTCCGTCGCCGCCTCCGCCGTTCTCATCAAAAGCGTCGCAAACGACCTCGTCCCCGATGCCGTCCACTCTTTCTTCTCCAACCGCATAAAAAAGCTGTCGTCCCAACTCACCGTCGTCGTCGACGAGTTTGACGGCCTCACCCCCAACCAGATGTTCGAGGCGGCCAACGTCTACTTGGGCACCAAGCTCTCCTCCTCAACGCAGAGAATCAAGGTCAACAAACCCGAAAAGGAGAAGCAGCTGCAGGTCAATATAGACAGGAACCAAGAGCTCGTTGATTGTTTCAATGGTGTGAAACTCAAGTGGGTTTTGGTGACGGAAAAGCCACCGGCGTCGGCTAACAACAACCGTGACCAGGTGTCAGAGGTTCGACACTTCGAGATCATTTTCCATAAGAAGCATAGGGACATGGTGCTCAGCTCTTACTTGCCCTATGTGTTAAAGAAGCATAGAGAAATCAAGGAGGAGAGAAAGGTGGTGAAGCTTCATACCGTTGATTACAATGGCACTGACTATTGGGGCTCCATAAACCTTGACCACCCTGCGAATTTCGATACCATTGCAATGGAGCCGGAGATGAAGAAGACATTGATTGAGGACCTAGATAGGTTTAGGGAGAGGAAGGAGTACTATAAGAGAGTAGGGAAGGCATGGAAACGTGGGTATTTGCTGTACGGACCACCCGGCACTGGAAAATCAAGCTTGGTTGCAGCCATGGCTAATTATCTGAAGTTTGATATTTTTGACTTGGATTTGAAGGAGGTTCAATGCAATTCTGATTTGAGAAGGTTGCTGATCGGCACGAAAAGTAGATCGATATTGGTGATCGAGGATATTGATTGCTCGGTTGAGTTGCAGAACAGAGACTCAGATCAAAATGAACCCAAAACTGTTGAGGATGATAAGGTGAGCCTCTCTGGTCTACTAAACTTCATTGATGGGTTGTGGTCAAGCTGTGGAGAGGAGAGAATCATTGTGTTCACGACGAATCACAAGGACCGACTTGATCAGGCCTTGCTCCGACCTGGGCGGATGGACTTGCACCTGCATATGTCCTACTGCACCTTCAGTGGCTTCAAGACATTAGCTTACAATTACTTGCAGATTAAAGAGCACCCACTTTTTGCAGACATTGAAGCATTATTGCTAAATCACAAGTTAGTTACACCTGCTGAAGTTGCCGGAGAGCTAATGAAGAGTGATGATGCTCGAGTCTCCCTTCAAGGTCTTGTCGAATTCCTCCAAAGCAAGAACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

438

Amino Acids

49.97

Weight (kDa)

6.88

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 39 - 124 6.2e-24 Domain associated at C-terminal with AAA
AAA PF00004 241 - 371 8e-20 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 373 - 436 2.3e-20 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39430
malus_domestica MD08G1026600.v1.1 MD08G1026700.v1.1
prunus_persica Prupe.1G375300_v2.0.a1 Prupe.1G375300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301551
rosa_laevigata RLG00000011245
rosa_multiflora Rmu_ssc0000452.1_g000001
rosa_roxburghii Rroxscaffold_7G00166660
rosa_rugosa Rorug06G0306000
rosa_samantha Rh6AG419700 Rh6BG425700 Rh6DG419100
rosa_wichuraiana Rw6G036280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1110, 1234
Acc36I ACCTGC 3 cut(s) 292, 1110, 1234
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 3 cut(s) 177, 228, 979
AciI CCGC 6 cut(s) 53, 66, 72, 139, 218, 1087
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 2 cut(s) 604, 1292
AcuI CTGAAG 3 cut(s) 806, 1108, 1251
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 2 cut(s) 686, 731
AfiI CCNNNNNNNGG 2 cut(s) 412, 746
AgsI TTSAA 6 cut(s) 343, 814, 824, 1135, 1193, 1280
AhdI GACNNNNNGTC 2 cut(s) 25, 415
AjnI CCWGG 2 cut(s) 411, 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
Alw21I GWGCWC 4 cut(s) 11, 330, 474, 1173
Alw26I GTCTC 2 cut(s) 915, 1276
Ama87I CYCGRG 1 cut(s) 1266
AoxI GGCC 4 cut(s) 54, 190, 219, 1068
ApeKI GCWGC 3 cut(s) 295, 298, 767
ApoI RAATTY 2 cut(s) 604, 1292
AspS9I GGNCC 3 cut(s) 655, 734, 1054
AsuC2I CCSGG 1 cut(s) 741
AsuHPI GGTGA 6 cut(s) 157, 187, 382, 547, 892, 976
AvaI CYCGRG 1 cut(s) 1266
AvaII GGWCC 3 cut(s) 655, 734, 1054
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 2 cut(s) 330, 581
BbsI GAAGAC 2 cut(s) 24, 647
Bbv12I GWGCWC 4 cut(s) 11, 330, 474, 1173
BbvI GCAGC 3 cut(s) 285, 307, 779
BccI CCATC 2 cut(s) 989, 1084
BceAI ACGGC 4 cut(s) 10, 59, 101, 205
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 2 cut(s) 413, 1083
BclI TGATCA 1 cut(s) 1063
BcnI CCSGG 1 cut(s) 741
BcoDI GTCTC 2 cut(s) 915, 1276
BfaI CTAG 2 cut(s) 659, 1315
BfmI CTRYAG 1 cut(s) 299
BfuAI ACCTGC 3 cut(s) 292, 1110, 1234
BisI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
BlpI GCTNAGC 1 cut(s) 473
BlsI GCNGC 6 cut(s) 55, 67, 220, 297, 300, 769
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 3 cut(s) 413, 741, 1083
Bme18I GGWCC 3 cut(s) 655, 734, 1054
BmeRI GACNNNNNGTC 2 cut(s) 25, 415
BmeT110I CYCGRG 1 cut(s) 1266
BmgT120I GGNCC 3 cut(s) 655, 734, 1054
BmiI GGNNCC 4 cut(s) 238, 320, 580, 627
BmrFI CCNGG 3 cut(s) 413, 741, 1083
BmsI GCATC 2 cut(s) 103, 1252
BpiI GAAGAC 2 cut(s) 24, 647
Bpu1102I GCTNAGC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 741
Bsa29I ATCGAT 1 cut(s) 872
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 771, 1082
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 746
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 751
Bse3DI GCAATG 2 cut(s) 615, 627
BseBI CCWGG 2 cut(s) 413, 1083
BseCI ATCGAT 1 cut(s) 872
BseDI CCNNGG 2 cut(s) 771, 1082
BseGI GGATG 2 cut(s) 961, 1095
BseLI CCNNNNNNNGG 2 cut(s) 412, 746
BseMI GCAATG 2 cut(s) 615, 627
BseMII CTCAG 2 cut(s) 487, 939
BseNI ACTGG 1 cut(s) 751
BseRI GAGGAG 4 cut(s) 238, 241, 536, 1034
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 3 cut(s) 285, 307, 779
BsgI GTGCAG 1 cut(s) 1102
BshFI GGCC 4 cut(s) 56, 192, 221, 1070
BshNI GGYRCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 872
BsiHKAI GWGCWC 4 cut(s) 11, 330, 474, 1173
BsiHKCI CYCGRG 1 cut(s) 1266
BsiSI CCGG 4 cut(s) 386, 629, 741, 1239
BslFI GGGAC 4 cut(s) 13, 92, 142, 476
BslI CCNNNNNNNGG 2 cut(s) 412, 746
BsmAI GTCTC 2 cut(s) 915, 1276
BsmFI GGGAC 4 cut(s) 13, 92, 142, 476
BsnI GGCC 4 cut(s) 56, 192, 221, 1070
BsoBI CYCGRG 1 cut(s) 1266
Bsp1286I GDGCHC 6 cut(s) 11, 239, 330, 474, 581, 1173
Bsp143I GATC 6 cut(s) 438, 852, 869, 882, 928, 1063
Bsp1720I GCTNAGC 1 cut(s) 473
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 6 cut(s) 53, 66, 72, 139, 218, 1087
BspANI GGCC 4 cut(s) 56, 192, 221, 1070
BspCNI CTCAG 2 cut(s) 486, 938
BspDI ATCGAT 1 cut(s) 872
BspLI GGNNCC 4 cut(s) 238, 320, 580, 627
BspMAI CTGCAG 1 cut(s) 303
BspMI ACCTGC 3 cut(s) 292, 1110, 1234
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 615, 627
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 1 cut(s) 751
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 771, 1082
BssMI GATC 6 cut(s) 438, 852, 869, 882, 928, 1063
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 771
Bst2UI CCWGG 2 cut(s) 413, 1083
Bst4CI ACNGT 4 cut(s) 169, 407, 550, 949
Bst6I CTCTTC 1 cut(s) 1247
BstACI GRCGYC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 473, 925
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 2 cut(s) 961, 1095
BstKTI GATC 6 cut(s) 441, 855, 872, 885, 931, 1066
BstMAI GTCTC 2 cut(s) 915, 1276
BstMBI GATC 6 cut(s) 438, 852, 869, 882, 928, 1063
BstMWI GCNNNNNNNGC 4 cut(s) 62, 71, 773, 1235
BstNI CCWGG 2 cut(s) 413, 1083
BstSCI CCNGG 3 cut(s) 411, 739, 1081
BstSFI CTRYAG 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 3 cut(s) 285, 307, 779
BstV2I GAAGAC 2 cut(s) 24, 647
BstXI CCANNNNNNTGG 1 cut(s) 622
Bsu15I ATCGAT 1 cut(s) 872
BsuRI GGCC 4 cut(s) 56, 192, 221, 1070
BsuTUI ATCGAT 1 cut(s) 872
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 2 cut(s) 961, 1095
BtsIMutI CAGTG 3 cut(s) 564, 744, 1132
BveI ACCTGC 3 cut(s) 292, 1110, 1234
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 3 cut(s) 655, 734, 1054
ClaI ATCGAT 1 cut(s) 872
CseI GACGC 2 cut(s) 79, 378
CsiI ACCWGGT 1 cut(s) 411
Csp6I GTAC 2 cut(s) 685, 730
CviAII CATG 3 cut(s) 466, 708, 772
CviQI GTAC 2 cut(s) 685, 730
DdeI CTNAG 2 cut(s) 473, 925
DpnI GATC 6 cut(s) 440, 854, 871, 884, 930, 1065
DpnII GATC 6 cut(s) 438, 852, 869, 882, 928, 1063
DriI GACNNNNNGTC 2 cut(s) 25, 415
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 1247
Eam1105I GACNNNNNGTC 2 cut(s) 25, 415
EarI CTCTTC 1 cut(s) 1247
EciI GGCGGA 2 cut(s) 61, 1102
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 771
Eco147I AGGCCT 1 cut(s) 1070
Eco24I GRGCYC 2 cut(s) 330, 581
Eco47I GGWCC 3 cut(s) 655, 734, 1054
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 3 cut(s) 806, 1108, 1251
Eco88I CYCGRG 1 cut(s) 1266
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 1292
EcoRII CCWGG 2 cut(s) 411, 1081
EcoT14I CCWWGG 1 cut(s) 771
EcoT38I GRGCYC 2 cut(s) 330, 581
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 3 cut(s) 469, 711, 775
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 4 cut(s) 13, 92, 142, 476
FatI CATG 3 cut(s) 465, 707, 771
FauNDI CATATG 1 cut(s) 1107
FbaI TGATCA 1 cut(s) 1063
FblI GTMKAC 3 cut(s) 177, 228, 979
Fnu4HI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
FokI GGATG 2 cut(s) 968, 1102
FriOI GRGCYC 2 cut(s) 330, 581
Fsp4HI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
FspBI CTAG 2 cut(s) 659, 1315
GluI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
HaeIII GGCC 4 cut(s) 56, 192, 221, 1070
HapII CCGG 4 cut(s) 386, 629, 741, 1239
HgaI GACGC 2 cut(s) 79, 378
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 3 cut(s) 469, 711, 775
HincII GTYRAC 2 cut(s) 178, 274
HindII GTYRAC 2 cut(s) 178, 274
HindIII AAGCTT 2 cut(s) 539, 757
HinfI GANTC 5 cut(s) 264, 923, 1026, 1045, 1269
HpaII CCGG 4 cut(s) 386, 629, 741, 1239
HphI GGTGA 6 cut(s) 157, 187, 382, 547, 892, 976
Hpy166II GTNNAC 6 cut(s) 121, 178, 229, 274, 980, 1038
Hpy188I TCNGA 5 cut(s) 421, 786, 835, 928, 1079
Hpy188III TCNNGA 3 cut(s) 436, 1039, 1135
Hpy8I GTNNAC 6 cut(s) 121, 178, 229, 274, 980, 1038
Hpy99I CGWCG 8 cut(s) 65, 95, 173, 176, 179, 182, 394, 1045
HpyAV CCTTC 6 cut(s) 673, 697, 808, 837, 1132, 1286
HpyCH4III ACNGT 4 cut(s) 169, 407, 550, 949
HpyCH4IV ACGT 2 cut(s) 225, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 71, 773, 1235
HpyF3I CTNAG 2 cut(s) 473, 925
HpySE526I ACGT 2 cut(s) 225, 715
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 3 cut(s) 469, 711, 775
Ksp22I TGATCA 1 cut(s) 1063
Kzo9I GATC 6 cut(s) 438, 852, 869, 882, 928, 1063
LmnI GCTCC 3 cut(s) 584, 625, 1080
Lsp1109I GCAGC 3 cut(s) 285, 307, 779
LweI GCATC 2 cut(s) 103, 1252
MabI ACCWGGT 1 cut(s) 411
MaeI CTAG 2 cut(s) 659, 1315
MaeII ACGT 2 cut(s) 225, 715
MaeIII GTNAC 3 cut(s) 370, 407, 1219
MalI GATC 6 cut(s) 440, 854, 871, 884, 930, 1065
MboI GATC 6 cut(s) 438, 852, 869, 882, 928, 1063
MboII GAAGA 5 cut(s) 29, 121, 649, 652, 1264
MhlI GDGCHC 6 cut(s) 11, 239, 330, 474, 581, 1173
MluCI AATT 5 cut(s) 604, 778, 829, 1150, 1292
MlyI GAGTC 2 cut(s) 917, 1278
MmeI TCCRAC 2 cut(s) 159, 1102
MseI TTAA 2 cut(s) 497, 1164
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 4 cut(s) 386, 629, 741, 1239
MspR9I CCNGG 3 cut(s) 413, 741, 1083
MvaI CCWGG 2 cut(s) 413, 1083
MwoI GCNNNNNNNGC 4 cut(s) 62, 71, 773, 1235
NciI CCSGG 1 cut(s) 741
NcoI CCATGG 1 cut(s) 771
NdeI CATATG 1 cut(s) 1107
NdeII GATC 6 cut(s) 438, 852, 869, 882, 928, 1063
NlaIII CATG 3 cut(s) 469, 711, 775
NlaIV GGNNCC 4 cut(s) 238, 320, 580, 627
NmuCI GTSAC 2 cut(s) 370, 407
PaeR7I CTCGAG 1 cut(s) 1266
PaqCI CACCTGC 2 cut(s) 1110, 1234
PceI AGGCCT 1 cut(s) 1070
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 3 cut(s) 264, 1026, 1045
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 6 cut(s) 55, 67, 220, 297, 300, 769
PleI GAGTC 2 cut(s) 917, 1277
PpsI GAGTC 2 cut(s) 917, 1277
PpuMI RGGWCCY 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 655
Psp6I CCWGG 2 cut(s) 411, 1081
PspGI CCWGG 2 cut(s) 411, 1081
PspN4I GGNNCC 4 cut(s) 238, 320, 580, 627
PspPI GGNCC 3 cut(s) 655, 734, 1054
PspPPI RGGWCCY 1 cut(s) 655
PspXI VCTCGAGB 1 cut(s) 1266
PstI CTGCAG 1 cut(s) 303
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 2 cut(s) 686, 731
RsaNI GTAC 2 cut(s) 685, 730
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 330
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 497, 1164
SatI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
Sau3AI GATC 6 cut(s) 438, 852, 869, 882, 928, 1063
Sau96I GGNCC 3 cut(s) 655, 734, 1054
ScaI AGTACT 1 cut(s) 686
SchI GAGTC 2 cut(s) 917, 1278
ScrFI CCNGG 3 cut(s) 413, 741, 1083
SduI GDGCHC 6 cut(s) 11, 239, 330, 474, 581, 1173
SexAI ACCWGGT 1 cut(s) 411
SfaNI GCATC 2 cut(s) 103, 1252
SfcI CTRYAG 1 cut(s) 299
Sfr274I CTCGAG 1 cut(s) 1266
SgrAI CRCCGGYG 1 cut(s) 385
SgrDI CGTCGACG 1 cut(s) 176
SinI GGWCC 3 cut(s) 655, 734, 1054
SlaI CTCGAG 1 cut(s) 1266
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 356, 1266
SmoI CTYRAG 2 cut(s) 356, 1266
Sse9I AATT 5 cut(s) 604, 778, 829, 1150, 1292
SseBI AGGCCT 1 cut(s) 1070
SsiI CCGC 6 cut(s) 53, 66, 72, 139, 218, 1087
SspMI CTAG 2 cut(s) 659, 1315
SstI GAGCTC 1 cut(s) 330
StuI AGGCCT 1 cut(s) 1070
StyD4I CCNGG 3 cut(s) 411, 739, 1081
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 4 cut(s) 169, 407, 550, 949
TaiI ACGT 2 cut(s) 228, 718
TaqI TCGA 9 cut(s) 177, 213, 427, 435, 609, 872, 885, 1267, 1290
TaqII GACCGA 1 cut(s) 1071
TasI AATT 5 cut(s) 604, 778, 829, 1150, 1292
TatI WGTACW 1 cut(s) 684
TauI GCSGC 3 cut(s) 56, 68, 221
TfiI GAWTC 3 cut(s) 264, 1026, 1045
Tru1I TTAA 2 cut(s) 497, 1164
Tru9I TTAA 2 cut(s) 497, 1164
TscAI CASTG 3 cut(s) 571, 751, 1132
TseFI GTSAC 2 cut(s) 370, 407
TseI GCWGC 3 cut(s) 295, 298, 767
Tsp45I GTSAC 2 cut(s) 370, 407
TspDTI ATGAA 5 cut(s) 533, 650, 951, 979, 1265
TspGWI ACGGA 3 cut(s) 49, 389, 747
TspRI CASTG 3 cut(s) 571, 751, 1132
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 3 cut(s) 655, 734, 1054
XapI RAATTY 2 cut(s) 604, 1292
XcmI CCANNNNNNNNNTGG 2 cut(s) 46, 229
XhoI CTCGAG 1 cut(s) 1266
XmiI GTMKAC 3 cut(s) 177, 228, 979
XspI CTAG 2 cut(s) 659, 1315
ZrmI AGTACT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.