Rorug06G0306000

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016775
Physical Location & Seq
Forward (+)
45727890 .. 45728564
675 bp
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UTR
Exon/CDS
Intron
Rorug06G0306000.1

Sequence Viewer

Length: 432 bp
ATGGAGGGGAAGAGAGAGGAGAACAAGCCGAAAGTAAGAGACCAAACCCGGTATAGAGGAACTCGGAGGAGGCCATGGGGCAGGTATGCAGCAGAAATTCGGGACCCTACGAGAAATGGGGCACGTCTATGGTTAGGTACATTTGACACGGCCGAACAGGCAGCAAGGGATTATGATCGAGCTGCTTTTCGTCTTCGAGGGAATTTAGCTATCCTCAACTTCCCAAATGAATACCAATACCATAACTCATCAACCAGCTCTTTCGTCGCATCAGATTCCACCTCTTCATCAGCTGCCATTTCTTCTGTTGCTGCTGATGACAATGGGAAGCCTTTCTGCAAACAAGAAAGTGAAGTTATTGTGTTCGAGTATGTGGACAATATGATCTTGGAGGAGCTTCTTGCAGTTAAAGAAGATACACATGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

143

Amino Acids

16.27

Weight (kDa)

6.15

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 16 - 68 1.3e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39430
malus_domestica MD08G1026600.v1.1 MD08G1026700.v1.1
prunus_persica Prupe.1G375300_v2.0.a1 Prupe.1G375300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301551
rosa_laevigata RLG00000011245
rosa_multiflora Rmu_ssc0000452.1_g000001
rosa_roxburghii Rroxscaffold_7G00166660
rosa_rugosa Rorug06G0306000
rosa_samantha Rh6AG419700 Rh6BG425700 Rh6DG419100
rosa_wichuraiana Rw6G036280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 96, 202
AfaI GTAC 1 cut(s) 139
AjiI CACGTC 1 cut(s) 125
AluBI AGCT 5 cut(s) 182, 209, 258, 293, 397
AluI AGCT 5 cut(s) 182, 209, 258, 293, 397
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 2 cut(s) 71, 150
ApeKI GCWGC 5 cut(s) 89, 161, 182, 293, 311
ApoI RAATTY 2 cut(s) 96, 202
Asp700I GAANNNNTTC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 49
AvaII GGWCC 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 5 cut(s) 101, 169, 173, 280, 298
BceAI ACGGC 1 cut(s) 165
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 72
BglI GCCNNNNNGGC 1 cut(s) 158
BisI GCNGC 5 cut(s) 90, 162, 183, 294, 312
BlsI GCNGC 5 cut(s) 91, 163, 184, 295, 313
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 104, 105
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 49
BsaBI GATNNNNATC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 174
BseRI GAGGAG 3 cut(s) 32, 82, 407
BseSI GKGCMC 1 cut(s) 124
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 5 cut(s) 101, 169, 173, 280, 298
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 73, 152
BsiEI CGRYCG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 73, 152
Bso31I GGTCTC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 2 cut(s) 175, 384
Bsp19I CCATGG 1 cut(s) 74
BspANI GGCC 2 cut(s) 73, 152
BspLI GGNNCC 2 cut(s) 104, 105
BspMI ACCTGC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 175, 384
BssT1I CCWWGG 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 5, 289
BstDSI CCRYGG 1 cut(s) 74
BstKTI GATC 2 cut(s) 178, 387
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 2 cut(s) 175, 384
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 5 cut(s) 101, 169, 173, 280, 298
BstV2I GAAGAC 1 cut(s) 185
BstZI CGGCCG 1 cut(s) 150
BsuRI GGCC 2 cut(s) 73, 152
BtgI CCRYGG 1 cut(s) 74
BtrI CACGTC 1 cut(s) 125
BveI ACCTGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 138
CviAII CATG 2 cut(s) 75, 422
CviJI RGCY 9 cut(s) 28, 73, 152, 182, 209, 258, 293, 331, 397
CviKI_1 RGCY 9 cut(s) 28, 73, 152, 182, 209, 258, 293, 331, 397
CviQI GTAC 1 cut(s) 138
DpnI GATC 2 cut(s) 177, 386
DpnII GATC 2 cut(s) 175, 384
EaeI YGGCCR 1 cut(s) 150
EagI CGGCCG 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 5, 289
EarI CTCTTC 2 cut(s) 5, 289
EclXI CGGCCG 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 78, 425
FaiI YATR 9 cut(s) 54, 76, 87, 130, 174, 243, 372, 383, 423
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 74, 421
Fnu4HI GCNGC 5 cut(s) 90, 162, 183, 294, 312
Fsp4HI GCNGC 5 cut(s) 90, 162, 183, 294, 312
GluI GCNGC 5 cut(s) 90, 162, 183, 294, 312
HaeIII GGCC 2 cut(s) 73, 152
HapII CCGG 1 cut(s) 49
Hin1II CATG 2 cut(s) 78, 425
HinfI GANTC 1 cut(s) 275
HpaII CCGG 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 66, 274
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 89, 339, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 78, 425
KflI GGGWCCC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 175, 384
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 4 cut(s) 62, 67, 143, 268
Lsp1109I GCAGC 5 cut(s) 101, 169, 173, 280, 298
LweI GCATC 1 cut(s) 278
MaeII ACGT 1 cut(s) 124
MalI GATC 2 cut(s) 177, 386
MboI GATC 2 cut(s) 175, 384
MboII GAAGA 5 cut(s) 22, 185, 276, 294, 425
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 2 cut(s) 96, 202
MnlI CCTC 8 cut(s) 10, 50, 60, 63, 191, 224, 292, 385
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 127
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 49
NcoI CCATGG 1 cut(s) 74
NdeII GATC 2 cut(s) 175, 384
NlaIII CATG 2 cut(s) 78, 425
NlaIV GGNNCC 2 cut(s) 104, 105
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 5 cut(s) 91, 163, 184, 295, 313
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 104, 105
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 127
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 5 cut(s) 90, 162, 183, 294, 312
Sau3AI GATC 2 cut(s) 175, 384
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 1 cut(s) 124
SetI ASST 9 cut(s) 86, 127, 139, 184, 211, 260, 284, 295, 399
SfaNI GCATC 1 cut(s) 278
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 127
Sse9I AATT 2 cut(s) 96, 202
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 74
TaiI ACGT 1 cut(s) 127
TaqI TCGA 3 cut(s) 178, 196, 366
TasI AATT 2 cut(s) 96, 202
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseI GCWGC 5 cut(s) 89, 161, 182, 293, 311
TspDTI ATGAA 2 cut(s) 243, 276
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 2 cut(s) 96, 202
XmnI GAANNNNTTC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.