Rmu_ssc0000452.1_g000001

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000452.1
OG0016775
Physical Location & Seq
Forward (+)
318 .. 1298
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000452.1_g000001.1.cds

Sequence Viewer

Length: 981 bp
atgtggtgctcaaaggaagacttgccgtccccaaaaaccattctctcggtggcggcctccgtcgccgcctccgccgttctcatcaaaagcgtcgcaaacgacctcgtccccgatgccgtccactctttcttctccaaccgcatcaaaaagctgtcgtcccaactcaccgtcgtcgtcgacgagtgtgacggcctcacccccaaccagatgttcgaggcggccaacgtctacttgggcaccaagctctcctcctcaacgcagagaatcaaggtcaacaaacccgaaaaggagaagcagctgcaggtcaatatagacaggaaccaagagctcgttgattgtttcaatggtgtgaaactcaagtgggttttggtgacggaaaagccaccggcgtcggctaacaacaaccgtgaccaagtgtcggaggttcgacacttcgagatcattttccataagaagcatagggacatggtgctcagctcttacttgccctatgtgttaaagaagcatagagaaatcaaggaggagagaaaggtggtgaagcttcataccgttgattacaatggcactgactattggggctccataaaccttgaccaccctgcgaatttcgataccattgcaatggagccggagatgaagaagacattgattgaggacctagataggtttagggagaggaaggagtactataagagagtagggaaggcatggaaacgtgggtatttgctgtacggaccacccggcactggaaaatcaagcttggttgcagccatggctaattatctgaagtttgatatttttgacttggatttgaaggaggttcaatgcaattctgatttgagaaggttgctgatcggcacgaaaagtagatcgatattggtgatcgaggatattgattgctcggttgagttgcagaacagagactcagatcaaaatgaacccaaaactgttgaggatgataaggtaaataataaatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

326

Amino Acids

37.26

Weight (kDa)

8.4

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39430
malus_domestica MD08G1026600.v1.1 MD08G1026700.v1.1
prunus_persica Prupe.1G375300_v2.0.a1 Prupe.1G375300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301551
rosa_laevigata RLG00000011245
rosa_multiflora Rmu_ssc0000452.1_g000001
rosa_roxburghii Rroxscaffold_7G00166660
rosa_rugosa Rorug06G0306000
rosa_samantha Rh6AG419700 Rh6BG425700 Rh6DG419100
rosa_wichuraiana Rw6G036280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 2 cut(s) 177, 228
AciI CCGC 5 cut(s) 53, 66, 72, 139, 218
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 1 cut(s) 806
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 2 cut(s) 686, 731
AfiI CCNNNNNNNGG 2 cut(s) 418, 746
AgsI TTSAA 3 cut(s) 343, 814, 824
AhdI GACNNNNNGTC 2 cut(s) 25, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 7 cut(s) 151, 244, 298, 328, 477, 541, 759
AluI AGCT 7 cut(s) 151, 244, 298, 328, 477, 541, 759
Alw21I GWGCWC 3 cut(s) 11, 330, 474
Alw26I GTCTC 1 cut(s) 915
AoxI GGCC 3 cut(s) 54, 190, 219
ApeKI GCWGC 3 cut(s) 295, 298, 767
ApoI RAATTY 1 cut(s) 604
AspS9I GGNCC 2 cut(s) 655, 734
AsuC2I CCSGG 1 cut(s) 741
AsuHPI GGTGA 5 cut(s) 157, 187, 382, 547, 892
AvaII GGWCC 2 cut(s) 655, 734
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 2 cut(s) 330, 581
BbsI GAAGAC 2 cut(s) 24, 647
Bbv12I GWGCWC 3 cut(s) 11, 330, 474
BbvI GCAGC 3 cut(s) 285, 307, 779
BceAI ACGGC 4 cut(s) 10, 59, 101, 205
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BcnI CCSGG 1 cut(s) 741
BcoDI GTCTC 1 cut(s) 915
BfaI CTAG 2 cut(s) 659, 979
BfmI CTRYAG 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 292
BisI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
BlpI GCTNAGC 1 cut(s) 473
BlsI GCNGC 6 cut(s) 55, 67, 220, 297, 300, 769
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 2 cut(s) 655, 734
BmeRI GACNNNNNGTC 2 cut(s) 25, 415
BmgT120I GGNCC 2 cut(s) 655, 734
BmiI GGNNCC 4 cut(s) 238, 320, 580, 627
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 2 cut(s) 103, 150
BpiI GAAGAC 2 cut(s) 24, 647
Bpu1102I GCTNAGC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 741
Bsa29I ATCGAT 1 cut(s) 872
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 771
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 746
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 751
Bse3DI GCAATG 2 cut(s) 615, 627
BseCI ATCGAT 1 cut(s) 872
BseDI CCNNGG 1 cut(s) 771
BseGI GGATG 1 cut(s) 961
BseLI CCNNNNNNNGG 2 cut(s) 418, 746
BseMI GCAATG 2 cut(s) 615, 627
BseMII CTCAG 2 cut(s) 487, 939
BseNI ACTGG 1 cut(s) 751
BseRI GAGGAG 3 cut(s) 238, 241, 536
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 3 cut(s) 285, 307, 779
BshFI GGCC 3 cut(s) 56, 192, 221
BshNI GGYRCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 872
BsiHKAI GWGCWC 3 cut(s) 11, 330, 474
BsiSI CCGG 3 cut(s) 386, 629, 741
BslFI GGGAC 4 cut(s) 13, 92, 142, 476
BslI CCNNNNNNNGG 2 cut(s) 418, 746
BsmAI GTCTC 1 cut(s) 915
BsmFI GGGAC 4 cut(s) 13, 92, 142, 476
BsnI GGCC 3 cut(s) 56, 192, 221
Bsp1286I GDGCHC 5 cut(s) 11, 239, 330, 474, 581
Bsp143I GATC 5 cut(s) 438, 852, 869, 882, 928
Bsp1720I GCTNAGC 1 cut(s) 473
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 5 cut(s) 53, 66, 72, 139, 218
BspANI GGCC 3 cut(s) 56, 192, 221
BspCNI CTCAG 2 cut(s) 486, 938
BspDI ATCGAT 1 cut(s) 872
BspLI GGNNCC 4 cut(s) 238, 320, 580, 627
BspMAI CTGCAG 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 292
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 615, 627
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 1 cut(s) 751
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 771
BssMI GATC 5 cut(s) 438, 852, 869, 882, 928
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 771
Bst4CI ACNGT 4 cut(s) 169, 407, 550, 949
BstACI GRCGYC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 473, 925
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 1 cut(s) 961
BstKTI GATC 5 cut(s) 441, 855, 872, 885, 931
BstMAI GTCTC 1 cut(s) 915
BstMBI GATC 5 cut(s) 438, 852, 869, 882, 928
BstMWI GCNNNNNNNGC 3 cut(s) 62, 71, 773
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 3 cut(s) 285, 307, 779
BstV2I GAAGAC 2 cut(s) 24, 647
BstXI CCANNNNNNTGG 1 cut(s) 622
Bsu15I ATCGAT 1 cut(s) 872
BsuRI GGCC 3 cut(s) 56, 192, 221
BsuTUI ATCGAT 1 cut(s) 872
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 1 cut(s) 961
BtsIMutI CAGTG 2 cut(s) 564, 744
BveI ACCTGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 655, 734
ClaI ATCGAT 1 cut(s) 872
CseI GACGC 2 cut(s) 79, 378
Csp6I GTAC 2 cut(s) 685, 730
CviAII CATG 3 cut(s) 466, 708, 772
CviQI GTAC 2 cut(s) 685, 730
DdeI CTNAG 2 cut(s) 473, 925
DpnI GATC 5 cut(s) 440, 854, 871, 884, 930
DpnII GATC 5 cut(s) 438, 852, 869, 882, 928
DriI GACNNNNNGTC 2 cut(s) 25, 415
EaeI YGGCCR 1 cut(s) 219
Eam1105I GACNNNNNGTC 2 cut(s) 25, 415
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 771
Eco24I GRGCYC 2 cut(s) 330, 581
Eco47I GGWCC 2 cut(s) 655, 734
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 806
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 771
EcoT38I GRGCYC 2 cut(s) 330, 581
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 3 cut(s) 469, 711, 775
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 4 cut(s) 13, 92, 142, 476
FatI CATG 3 cut(s) 465, 707, 771
FblI GTMKAC 2 cut(s) 177, 228
Fnu4HI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 2 cut(s) 330, 581
Fsp4HI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
FspBI CTAG 2 cut(s) 659, 979
GluI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
HaeIII GGCC 3 cut(s) 56, 192, 221
HapII CCGG 3 cut(s) 386, 629, 741
HgaI GACGC 2 cut(s) 79, 378
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 3 cut(s) 469, 711, 775
HincII GTYRAC 2 cut(s) 178, 274
HindII GTYRAC 2 cut(s) 178, 274
HindIII AAGCTT 2 cut(s) 539, 757
HinfI GANTC 2 cut(s) 264, 923
HpaII CCGG 3 cut(s) 386, 629, 741
HphI GGTGA 5 cut(s) 157, 187, 382, 547, 892
Hpy166II GTNNAC 4 cut(s) 121, 178, 229, 274
Hpy188I TCNGA 4 cut(s) 421, 786, 835, 928
Hpy188III TCNNGA 1 cut(s) 436
Hpy8I GTNNAC 4 cut(s) 121, 178, 229, 274
Hpy99I CGWCG 7 cut(s) 65, 95, 173, 176, 179, 182, 394
HpyAV CCTTC 4 cut(s) 673, 697, 808, 837
HpyCH4III ACNGT 4 cut(s) 169, 407, 550, 949
HpyCH4IV ACGT 2 cut(s) 225, 715
HpyCH4V TGCA 5 cut(s) 301, 620, 767, 828, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 71, 773
HpyF3I CTNAG 2 cut(s) 473, 925
HpySE526I ACGT 2 cut(s) 225, 715
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 3 cut(s) 469, 711, 775
Kzo9I GATC 5 cut(s) 438, 852, 869, 882, 928
LmnI GCTCC 2 cut(s) 584, 625
LpnPI CCDG 8 cut(s) 218, 287, 301, 399, 612, 642, 732, 754
Lsp1109I GCAGC 3 cut(s) 285, 307, 779
LweI GCATC 2 cut(s) 103, 150
MaeI CTAG 2 cut(s) 659, 979
MaeII ACGT 2 cut(s) 225, 715
MaeIII GTNAC 3 cut(s) 185, 370, 407
MalI GATC 5 cut(s) 440, 854, 871, 884, 930
MboI GATC 5 cut(s) 438, 852, 869, 882, 928
MboII GAAGA 4 cut(s) 29, 121, 649, 652
MhlI GDGCHC 5 cut(s) 11, 239, 330, 474, 581
MluCI AATT 3 cut(s) 604, 778, 829
MlyI GAGTC 1 cut(s) 917
MmeI TCCRAC 2 cut(s) 159, 399
MseI TTAA 1 cut(s) 497
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 3 cut(s) 386, 629, 741
MspR9I CCNGG 1 cut(s) 741
MwoI GCNNNNNNNGC 3 cut(s) 62, 71, 773
NciI CCSGG 1 cut(s) 741
NcoI CCATGG 1 cut(s) 771
NdeII GATC 5 cut(s) 438, 852, 869, 882, 928
NlaIII CATG 3 cut(s) 469, 711, 775
NlaIV GGNNCC 4 cut(s) 238, 320, 580, 627
NmuCI GTSAC 3 cut(s) 185, 370, 407
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 6 cut(s) 55, 67, 220, 297, 300, 769
PleI GAGTC 1 cut(s) 917
PpsI GAGTC 1 cut(s) 917
PpuMI RGGWCCY 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 655
PspN4I GGNNCC 4 cut(s) 238, 320, 580, 627
PspPI GGNCC 2 cut(s) 655, 734
PspPPI RGGWCCY 1 cut(s) 655
PstI CTGCAG 1 cut(s) 303
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 2 cut(s) 686, 731
RsaNI GTAC 2 cut(s) 685, 730
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 330
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 6 cut(s) 54, 66, 219, 296, 299, 768
Sau3AI GATC 5 cut(s) 438, 852, 869, 882, 928
Sau96I GGNCC 2 cut(s) 655, 734
ScaI AGTACT 1 cut(s) 686
SchI GAGTC 1 cut(s) 917
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 5 cut(s) 11, 239, 330, 474, 581
SfaNI GCATC 2 cut(s) 103, 150
SfcI CTRYAG 1 cut(s) 299
SgrAI CRCCGGYG 1 cut(s) 385
SgrDI CGTCGACG 1 cut(s) 176
SinI GGWCC 2 cut(s) 655, 734
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 3 cut(s) 604, 778, 829
SsiI CCGC 5 cut(s) 53, 66, 72, 139, 218
SspMI CTAG 2 cut(s) 659, 979
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 739
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 4 cut(s) 169, 407, 550, 949
TaiI ACGT 2 cut(s) 228, 718
TaqI TCGA 7 cut(s) 177, 213, 427, 435, 609, 872, 885
TasI AATT 3 cut(s) 604, 778, 829
TatI WGTACW 1 cut(s) 684
TauI GCSGC 3 cut(s) 56, 68, 221
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 2 cut(s) 571, 751
TseFI GTSAC 3 cut(s) 185, 370, 407
TseI GCWGC 3 cut(s) 295, 298, 767
Tsp45I GTSAC 3 cut(s) 185, 370, 407
TspDTI ATGAA 3 cut(s) 533, 650, 951
TspGWI ACGGA 3 cut(s) 49, 389, 747
TspRI CASTG 2 cut(s) 571, 751
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 655, 734
XapI RAATTY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 2 cut(s) 46, 229
XmiI GTMKAC 2 cut(s) 177, 228
XspI CTAG 2 cut(s) 659, 979
ZrmI AGTACT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.