Prupe.1G375300_v2.0.a1

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016775
Physical Location & Seq
Reverse (-)
34050991 .. 34053231
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G375300.1

Sequence Viewer

Length: 1356 bp
ATGTGGTGCTCACAGGAAAATCTACCCTCCCCGAAAACCATTCTATCAGCGGCGGCATCACTCGCCGCATCGGCAATTCTATTCCGAACGATTGCAAACGACCTCATCCCCGATGTCGTCCAAAATTCCTTCTACTCGCGCCTCCAAAAGCTGTCGTCCCAAATCACCGTCGTCGTGGAAGAGCTGGACGGCCTGACGCCGAACGAAATGTTCGAGGCGGCCAACCTCTATCTGGGCACCCTGCTCTCTACCTCTACGCGACGAATCAAAGTCAACAAGCCGGAAAAGGAGAAGCAGTTGCTGGTCACTATAGACAAGAACCAAGGGCTCGTTGATTGTTTCAAAGGCGTCAACTTCAAGTGGGTTTTGGTCAGCAGCCAAAAACCAGCCTCCAATGGCAAACGTGAGGATCATTCACAGTCCGAGGTTCGACAGTTGGAGCTCAGCTTCCATAAGAAGCACAGGGACATGGTGCTCAGCTCTTACTTGCCCTACATTCTGAACAAGTCCAAAGAAATCAAAGAGGAGAGAAAAGTGGTGAAGCTCCACACAGTCGACTATAACGGCACTGACTATTGGGGTTCCATAAACCTTGATCATCCGGCGACTTTCGATACCATGGCGATGGACCCGGAGATTAAGAAGGCGTTGATTGAGGACCTTGATCGGTTCAGAGAGAGGAAGGAGTATTATAGGAGAGTAGGCAAGGCTTGGAAACGCGGGTACTTGCTGTTTGGACCGCCCGGCACTGGTAAATCAAGCTTGGTTGCAGCCATGGCTAATTATCTGAAATTTGATATTTTTGACTTGGATTTGAAGGAAGTTCAATGCAATTCTGATTTGAGAAGGTTGTTGATTGGCACCAAGAGCCGATCCATATTGGTCATCGAGGATATAGATTGTTCAGTTGAGTTGCAAAACAGGGATGCTGAGAATGAACCCAAAACTGTTGAAGACGACAAGATTACCCTCTCTGGTCTATTGAACTTCATTGACGGATTGTGGTCAACCTGTGGAGAGGAGAGAATCATTGTGTTCACCACAAATCGCAAGGACCGACTTGATCCAGCGTTGCTGCGACCTGGTCGGATGGACCAGCACATCCACATGTCCTACTGCACCTTCAGTGGTTTCAAGACATTGGCATACAATTACTTGCGGATTCAAGAGCACCCACTTTTTGGAGATATTGAGAAGTTGCTAGATTATTACAAGGCGCAAGCAACACCTGCTGAAGTTGCTGGAGAGCTGCTGAAGAGTGATGATGCTCAAGTTTCCCTTCAAGGTCTTATCACATTCCTCCAAAGCAAGAACAAGATGGAAACTGCATGGCAGGATATTACGGTAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

452

Amino Acids

51.39

Weight (kDa)

6.74

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39430
malus_domestica MD08G1026600.v1.1 MD08G1026700.v1.1
prunus_persica Prupe.1G375300_v2.0.a1 Prupe.1G375300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301551
rosa_laevigata RLG00000011245
rosa_multiflora Rmu_ssc0000452.1_g000001
rosa_roxburghii Rroxscaffold_7G00166660
rosa_rugosa Rorug06G0306000
rosa_samantha Rh6AG419700 Rh6BG425700 Rh6DG419100
rosa_wichuraiana Rw6G036280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1237
Acc36I ACCTGC 1 cut(s) 1237
AccB1I GGYRCC 2 cut(s) 236, 860
AccB7I CCANNNNNTGG 1 cut(s) 1181
AccI GTMKAC 1 cut(s) 555
AccII CGCG 3 cut(s) 139, 259, 720
AciI CCGC 7 cut(s) 50, 53, 66, 218, 720, 740, 1159
AclWI GGATC 3 cut(s) 417, 867, 1058
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 2 cut(s) 124, 791
AcuI CTGAAG 3 cut(s) 1108, 1254, 1274
AcyI GRCGYC 2 cut(s) 197, 348
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 3 cut(s) 232, 749, 1181
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 9 cut(s) 343, 358, 817, 827, 953, 985, 1135, 1166, 1283
AjnI CCWGG 1 cut(s) 1081
AluBI AGCT 8 cut(s) 151, 184, 442, 447, 480, 544, 762, 1249
AluI AGCT 8 cut(s) 151, 184, 442, 447, 480, 544, 762, 1249
Alw21I GWGCWC 4 cut(s) 11, 444, 477, 1173
AlwI GGATC 3 cut(s) 417, 867, 1058
AlwNI CAGNNNCTG 1 cut(s) 301
AoxI GGCC 2 cut(s) 190, 219
ApeKI GCWGC 4 cut(s) 375, 770, 1075, 1249
ApoI RAATTY 2 cut(s) 124, 791
AspLEI GCGC 2 cut(s) 141, 1219
AspS9I GGNCC 5 cut(s) 628, 658, 737, 1054, 1093
AsuC2I CCSGG 2 cut(s) 632, 744
AsuHPI GGTGA 3 cut(s) 157, 550, 1030
AvaII GGWCC 5 cut(s) 628, 658, 737, 1054, 1093
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 2 cut(s) 236, 860
BanII GRGCYC 2 cut(s) 330, 444
BbsI GAAGAC 1 cut(s) 960
Bbv12I GWGCWC 4 cut(s) 11, 444, 477, 1173
BbvI GCAGC 4 cut(s) 387, 782, 1062, 1236
BccI CCATC 3 cut(s) 619, 1084, 1312
BceAI ACGGC 2 cut(s) 205, 580
BciT130I CCWGG 1 cut(s) 1083
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 2 cut(s) 632, 744
BfaI CTAG 1 cut(s) 1202
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 1237
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 8 cut(s) 51, 54, 66, 219, 376, 771, 1076, 1250
BlpI GCTNAGC 2 cut(s) 443, 476
BlsI GCNGC 8 cut(s) 52, 55, 67, 220, 377, 772, 1077, 1251
Bme1390I CCNGG 3 cut(s) 632, 744, 1083
Bme18I GGWCC 5 cut(s) 628, 658, 737, 1054, 1093
BmgT120I GGNCC 5 cut(s) 628, 658, 737, 1054, 1093
BmiI GGNNCC 4 cut(s) 238, 583, 630, 862
BmrFI CCNGG 3 cut(s) 632, 744, 1083
BmsI GCATC 4 cut(s) 65, 77, 916, 1255
BpiI GAAGAC 1 cut(s) 960
BpmI CTGGAG 1 cut(s) 1263
Bpu1102I GCTNAGC 2 cut(s) 443, 476
BpuEI CTTGAG 1 cut(s) 1254
BpuMI CCSGG 2 cut(s) 632, 744
BsaHI GRCGYC 2 cut(s) 197, 348
BsaJI CCNNGG 4 cut(s) 322, 423, 618, 774
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 749, 1181
Bse1I ACTGG 1 cut(s) 754
BseBI CCWGG 1 cut(s) 1083
BseDI CCNNGG 4 cut(s) 322, 423, 618, 774
BseGI GGATG 5 cut(s) 105, 598, 931, 1095, 1101
BseLI CCNNNNNNNGG 3 cut(s) 232, 749, 1181
BseMII CTCAG 3 cut(s) 457, 490, 921
BseNI ACTGG 1 cut(s) 754
BseRI GAGGAG 2 cut(s) 539, 1034
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 4 cut(s) 387, 782, 1062, 1236
BsgI GTGCAG 1 cut(s) 1102
Bsh1236I CGCG 3 cut(s) 139, 259, 720
BshFI GGCC 2 cut(s) 192, 221
BshNI GGYRCC 2 cut(s) 236, 860
BsiHKAI GWGCWC 4 cut(s) 11, 444, 477, 1173
BsiSI CCGG 4 cut(s) 281, 602, 632, 744
BslFI GGGAC 2 cut(s) 142, 479
BslI CCNNNNNNNGG 3 cut(s) 232, 749, 1181
BsmFI GGGAC 2 cut(s) 142, 479
BsnI GGCC 2 cut(s) 192, 221
Bsp1286I GDGCHC 6 cut(s) 11, 239, 330, 444, 477, 1173
Bsp143I GATC 5 cut(s) 409, 595, 664, 872, 1063
Bsp1720I GCTNAGC 2 cut(s) 443, 476
Bsp19I CCATGG 2 cut(s) 618, 774
BspACI CCGC 7 cut(s) 50, 53, 66, 218, 720, 740, 1159
BspANI GGCC 2 cut(s) 192, 221
BspCNI CTCAG 3 cut(s) 456, 489, 922
BspFNI CGCG 3 cut(s) 139, 259, 720
BspLI GGNNCC 4 cut(s) 238, 583, 630, 862
BspMI ACCTGC 1 cut(s) 1237
BspPI GGATC 3 cut(s) 417, 867, 1058
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 2 cut(s) 236, 860
BsrI ACTGG 1 cut(s) 754
BssECI CCNNGG 4 cut(s) 322, 423, 618, 774
BssMI GATC 5 cut(s) 409, 595, 664, 872, 1063
BssNI GRCGYC 2 cut(s) 197, 348
BssT1I CCWWGG 3 cut(s) 322, 618, 774
Bst2UI CCWGG 1 cut(s) 1083
Bst4CI ACNGT 6 cut(s) 169, 420, 435, 553, 949, 1345
Bst6I CTCTTC 2 cut(s) 174, 1250
BstACI GRCGYC 2 cut(s) 197, 348
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstC8I GCNNGC 1 cut(s) 1221
BstDEI CTNAG 3 cut(s) 443, 476, 930
BstDSI CCRYGG 2 cut(s) 618, 774
BstF5I GGATG 5 cut(s) 105, 598, 931, 1095, 1101
BstFNI CGCG 3 cut(s) 139, 259, 720
BstHHI GCGC 2 cut(s) 141, 1219
BstKTI GATC 5 cut(s) 412, 598, 667, 875, 1066
BstMBI GATC 5 cut(s) 409, 595, 664, 872, 1063
BstMWI GCNNNNNNNGC 6 cut(s) 62, 71, 776, 867, 1229, 1238
BstNI CCWGG 1 cut(s) 1083
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 3 cut(s) 630, 742, 1081
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 239
BstUI CGCG 3 cut(s) 139, 259, 720
BstV1I GCAGC 4 cut(s) 387, 782, 1062, 1236
BstV2I GAAGAC 1 cut(s) 960
BstXI CCANNNNNNTGG 1 cut(s) 625
BsuRI GGCC 2 cut(s) 192, 221
BtgI CCRYGG 2 cut(s) 618, 774
BtgZI GCGATG 1 cut(s) 638
BtsCI GGATG 5 cut(s) 105, 598, 931, 1095, 1101
BtsIMutI CAGTG 3 cut(s) 567, 747, 1132
BveI ACCTGC 1 cut(s) 1237
Cac8I GCNNGC 1 cut(s) 1221
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 2 cut(s) 141, 1219
Cfr13I GGNCC 5 cut(s) 628, 658, 737, 1054, 1093
CseI GACGC 2 cut(s) 205, 337
CsiI ACCWGGT 1 cut(s) 1081
Csp6I GTAC 1 cut(s) 724
CviAII CATG 5 cut(s) 469, 619, 775, 1108, 1329
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 3 cut(s) 443, 476, 930
DpnI GATC 5 cut(s) 411, 597, 666, 874, 1065
DpnII GATC 5 cut(s) 409, 595, 664, 872, 1063
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 174, 1250
EarI CTCTTC 2 cut(s) 174, 1250
Ecl136II GAGCTC 1 cut(s) 442
Eco130I CCWWGG 3 cut(s) 322, 618, 774
Eco24I GRGCYC 2 cut(s) 330, 444
Eco47I GGWCC 5 cut(s) 628, 658, 737, 1054, 1093
Eco53kI GAGCTC 1 cut(s) 442
Eco57I CTGAAG 3 cut(s) 1108, 1254, 1274
EcoICRI GAGCTC 1 cut(s) 442
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 1081
EcoT14I CCWWGG 3 cut(s) 322, 618, 774
EcoT38I GRGCYC 2 cut(s) 330, 444
ErhI CCWWGG 3 cut(s) 322, 618, 774
FaeI CATG 5 cut(s) 472, 622, 778, 1111, 1332
FalI AAGNNNNNCTT 2 cut(s) 1263, 1295
FaqI GGGAC 2 cut(s) 142, 479
FatI CATG 5 cut(s) 468, 618, 774, 1107, 1328
FauI CCCGC 1 cut(s) 713
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 8 cut(s) 51, 54, 66, 219, 376, 771, 1076, 1250
FokI GGATG 5 cut(s) 92, 585, 938, 1088, 1102
FriOI GRGCYC 2 cut(s) 330, 444
Fsp4HI GCNGC 8 cut(s) 51, 54, 66, 219, 376, 771, 1076, 1250
FspBI CTAG 1 cut(s) 1202
GlaI GCGC 2 cut(s) 140, 1218
GluI GCNGC 8 cut(s) 51, 54, 66, 219, 376, 771, 1076, 1250
GsuI CTGGAG 1 cut(s) 1263
HaeIII GGCC 2 cut(s) 192, 221
HapII CCGG 4 cut(s) 281, 602, 632, 744
HgaI GACGC 2 cut(s) 205, 337
HhaI GCGC 2 cut(s) 141, 1219
Hin1I GRCGYC 2 cut(s) 197, 348
Hin1II CATG 5 cut(s) 472, 622, 778, 1111, 1332
Hin6I GCGC 2 cut(s) 139, 1217
HinP1I GCGC 2 cut(s) 139, 1217
HincII GTYRAC 4 cut(s) 274, 352, 556, 1008
HindII GTYRAC 4 cut(s) 274, 352, 556, 1008
HindIII AAGCTT 1 cut(s) 760
HinfI GANTC 3 cut(s) 264, 1026, 1162
HpaII CCGG 4 cut(s) 281, 602, 632, 744
HphI GGTGA 3 cut(s) 157, 550, 1030
Hpy166II GTNNAC 5 cut(s) 274, 352, 556, 1008, 1038
Hpy188I TCNGA 7 cut(s) 86, 424, 501, 674, 789, 838, 1089
Hpy188III TCNNGA 2 cut(s) 1135, 1166
Hpy8I GTNNAC 5 cut(s) 274, 352, 556, 1008, 1038
Hpy99I CGWCG 3 cut(s) 173, 176, 264
HpyAV CCTTC 7 cut(s) 139, 637, 676, 811, 840, 1132, 1289
HpyCH4III ACNGT 6 cut(s) 169, 420, 435, 553, 949, 1345
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 6 cut(s) 95, 770, 831, 916, 1119, 1328
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 71, 776, 867, 1229, 1238
HpyF3I CTNAG 3 cut(s) 443, 476, 930
HpySE526I ACGT 1 cut(s) 403
Hsp92I GRCGYC 2 cut(s) 197, 348
Hsp92II CATG 5 cut(s) 472, 622, 778, 1111, 1332
HspAI GCGC 2 cut(s) 139, 1217
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 5 cut(s) 409, 595, 664, 872, 1063
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 439, 549
Lsp1109I GCAGC 4 cut(s) 387, 782, 1062, 1236
LweI GCATC 4 cut(s) 65, 77, 916, 1255
MabI ACCWGGT 1 cut(s) 1081
MaeI CTAG 1 cut(s) 1202
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 304
MalI GATC 5 cut(s) 411, 597, 666, 874, 1065
MboI GATC 5 cut(s) 409, 595, 664, 872, 1063
MboII GAAGA 3 cut(s) 191, 965, 1267
MhlI GDGCHC 6 cut(s) 11, 239, 330, 444, 477, 1173
MluCI AATT 6 cut(s) 75, 124, 781, 791, 832, 1150
MmeI TCCRAC 2 cut(s) 417, 1067
MseI TTAA 1 cut(s) 639
MslI CAYNNNNRTG 2 cut(s) 623, 1106
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 4 cut(s) 281, 602, 632, 744
MspR9I CCNGG 3 cut(s) 632, 744, 1083
MvaI CCWGG 1 cut(s) 1083
MvnI CGCG 3 cut(s) 139, 259, 720
MwoI GCNNNNNNNGC 6 cut(s) 62, 71, 776, 867, 1229, 1238
NciI CCSGG 2 cut(s) 632, 744
NcoI CCATGG 2 cut(s) 618, 774
NdeII GATC 5 cut(s) 409, 595, 664, 872, 1063
NlaIII CATG 5 cut(s) 472, 622, 778, 1111, 1332
NlaIV GGNNCC 4 cut(s) 238, 583, 630, 862
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 1111
PaqCI CACCTGC 1 cut(s) 1237
PciI ACATGT 1 cut(s) 1107
PciSI GCTCTTC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 1054
PfeI GAWTC 3 cut(s) 264, 1026, 1162
PflFI GACNNNGTC 1 cut(s) 1083
PflMI CCANNNNNTGG 1 cut(s) 1181
PkrI GCNGC 8 cut(s) 52, 55, 67, 220, 377, 772, 1077, 1251
PpuMI RGGWCCY 1 cut(s) 658
PscI ACATGT 1 cut(s) 1107
Psp124BI GAGCTC 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 1081
PspGI CCWGG 1 cut(s) 1081
PspN4I GGNNCC 4 cut(s) 238, 583, 630, 862
PspPI GGNCC 5 cut(s) 628, 658, 737, 1054, 1093
PspPPI RGGWCCY 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 301
PsyI GACNNNGTC 1 cut(s) 1083
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 2 cut(s) 623, 1106
SacI GAGCTC 1 cut(s) 444
SalI GTCGAC 1 cut(s) 554
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 8 cut(s) 51, 54, 66, 219, 376, 771, 1076, 1250
Sau3AI GATC 5 cut(s) 409, 595, 664, 872, 1063
Sau96I GGNCC 5 cut(s) 628, 658, 737, 1054, 1093
ScrFI CCNGG 3 cut(s) 632, 744, 1083
SduI GDGCHC 6 cut(s) 11, 239, 330, 444, 477, 1173
SexAI ACCWGGT 1 cut(s) 1081
SfaNI GCATC 4 cut(s) 65, 77, 916, 1255
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 5 cut(s) 628, 658, 737, 1054, 1093
SmiMI CAYNNNNRTG 2 cut(s) 623, 1106
SmlI CTYRAG 1 cut(s) 1269
SmoI CTYRAG 1 cut(s) 1269
Sse9I AATT 6 cut(s) 75, 124, 781, 791, 832, 1150
SsiI CCGC 7 cut(s) 50, 53, 66, 218, 720, 740, 1159
SspMI CTAG 1 cut(s) 1202
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 3 cut(s) 630, 742, 1081
StyI CCWWGG 3 cut(s) 322, 618, 774
TaaI ACNGT 6 cut(s) 169, 420, 435, 553, 949, 1345
TaiI ACGT 1 cut(s) 406
TaqI TCGA 5 cut(s) 213, 430, 555, 612, 888
TaqII GACCGA 1 cut(s) 1071
TasI AATT 6 cut(s) 75, 124, 781, 791, 832, 1150
TauI GCSGC 4 cut(s) 53, 56, 68, 221
TfiI GAWTC 3 cut(s) 264, 1026, 1162
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 3 cut(s) 574, 754, 1132
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 4 cut(s) 375, 770, 1075, 1249
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 951, 979
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 3 cut(s) 574, 754, 1132
Tth111I GACNNNGTC 1 cut(s) 1083
Van91I CCANNNNNTGG 1 cut(s) 1181
VpaK11BI GGWCC 5 cut(s) 628, 658, 737, 1054, 1093
XapI RAATTY 2 cut(s) 124, 791
XceI RCATGY 1 cut(s) 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 1 cut(s) 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.