FvH4_2g40380

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010830
Physical Location & Seq
Reverse (-)
28770140 .. 28774509
4370 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40380.t2

Sequence Viewer

Length: 2655 bp
ATGCTCAGGCGCTACTGCTTCCACCGCCGACCACTCCACGTGTCCCGAACCGCCGTCCACTGGAAGCCCCGGGACGAGTACAAGCTGACCCGACCCGAATTGCTCGACCGGATCTCCCGCCTCCTCGTCCTCCAACGGTACGACGCCCTTAACAACCTCTCTTTTGAATTCTCCGATCAACTCCTCAACTCCGTTCTCCGCAACCTCAAGCTAAACCCTAACGCCTGCTTAGCGTTCTTCAAATTGGCCTCGAAGCAACAAAAGTTCAGGCCTAATCTCAAGTCTTACTGTATAATTGTTCATATTTTATCTAGGGCTAGATTGTATGATCAAACCAGAGCCTACTTGAATGAATTGGTTGCTCTCTGTAAGAGTAATTATCCGGTTTTCGTGGTGTGGAATGAGCTTGTTAGGGTTTATAGGGAGTTTAATTTTTCGCCGACGGTTTTCGATATGATTCTCAAGGTGTTTGCTGAGCAAGGGATGATAAAGTATGCATTACATGTGTTTGATAATATGGGGAAGTGCGGTAGGGTGCCGAGTTTGAGGTCTTGTAATTCTTTGTTGAGTAATTTAGTCAGGAATGGGGAGAGTGATACTGCATTGCTTGTTTACGAGCAGGTAGTTAGGTTGGGGATTGTGCCGGATGTGTATACTTGTTCGATTATGGTGAGAGCGTATTGTAAGGAGGGGAGAGTGAGCAGGGCGGCGGAGTTTGTGAAGGAAATGGAGAGGTCAGGGGTTGAGGTAAATGTGGTGAGTTATAATAGCTTGATTGATGGGTATGCCAGTCTGGGAGATGTTGAAGGAGCGACATCGGTGTTGAGGGTGATGTCTGAAAGGGGAATTAAGAGAAATGTGGTGAGTTGTACGCTGTTGATGAAGGCCTACTGCAGGCAAGGTAAAATGGAGGAAGCGGAGGAGGTGCTTCGTGGTATAAAGGAGGAGGAGCCTGTGGTTGTCGATGAGTGTGCGTATGGTGTGTTGGTAGATGGGTATTGTAAAGCTGGCAGAATGGATGATGCTGGTAGGATTCAAGATGAGATGTTGAGGATAGGTTTAAAAATGAATACTATCATTTGCAACTCCTTGATCAACGGGTATTGTAAGCTTGGTCAAGTTCGGGAAGCAGAGGGAGTATTGAAGCATATGAGATCTTGGAACTTAAAGCCTGATTCTTATAGTTACAATACCCTGATGGATGGTTATTGTAGGAAGGGTCAGACAAGTGAATCATTGAAGGTTTTTGATGAGATGCCTCAGGGAGGAATCCATCACACTGTGGTAACTTATAATACCCTTCTCAAGGGTTTATGTCAAGCGAATGCTTTTGATGGTGCTTTACACCTTTGGAATTTAATGTTGAAAAGAGGGTTGGCTCCTGAAGAGGTTAGCTACTGTTCTCTGCTTGATGGGTTTTTCAAGAAGGAAGATCTTGACAGTGCTATAAATCTGTGGAAAGTTATTTTGACAAAGGGTTTTACAAAAAGCCGGTTTGCTTTCAATACAATGATTAATGGGTTATGCAAGATGGGGAAGTTGGTCGAAGCGGAGGAGATCTTCAGCAAGATGAAGGAGCTAGGATATTTACCTGATGAGATAACTTATAGAACCCTGAGTGATCAGTACTGCAAAGTTGGGAATGTTGAAGAAGCTTTCAGAGTTAAAACTTTGATGGAAGCGCAGGCAATATTTCCTTCAATTGAAATGTACAATTCGCTCATCAGTGGTGTTTTTATGTCTAGGGATATAAGTAAAGTGATGCATCTTCTTACTGAAATGCAGACAAGGGGACTATCCCCTAACACTGTAACGTATGGAGCTCTTATCTCTGGTTGGTGCAATGAAGGGATGCTTGATAAAGCTTTTAGTTTATACTTTGAGATGATTGACAAAGGGTTTGACACCAATTTGATCATTTGCAGCAAATTTATCAGTACTCTGTATAGGCTTGGAAAGATTGATGAAGCAAGTATTCTGTTGCAGAAGATAATAGATTATGATTCTATTCCATTTCAAAAAGGCGATATTACACATAGCGAAATTCAAAAGTTTGCAGATTCTCTTGATGAAAGTGCTAAAAGTTTCTGTCTGCCTAACAATGTCATATACAATATTGCTATCTTTGGAATCTGCAAATCGGGAAAGGTTGGTGATGCAAGAAAGTTTTTATCGGCTTTGCTGCTTAATGGCTTTTCTCCGGACAATTTTACATACTGTACACTGATTCACGCCACTGCTGCTGCTGGTAATGTGAACGAGGCTTTCAGCTTACGAGATGAAATGCTGAGAAGGAATCTTGTTCCTAACATTACCACATATAATGCTCTTATAAATGGCTTGTGCAAATCAGGAAATTTGGATCGAGCGCAGAGTCTCTTCCATAAACTTTGCAAGAAGGGGTTAGCTCCTAATGCTGTTACCTATAATATATTGATCGATGGATACTGCAGAATTGGCAATACTGTTGAAGCTTTTAAGTTTAAAGACAAGATGATTCTAGAAGGGATTGTTCCCTCTATAATCACTTATTCTGCATTGATCAATGGTCTTTATAAGCAAGGAAATATGAAAGAATCTGTGAAGCTTTTGAGCCAAATGATCAAGGCTGGAGTGCAACAAAACCTTGTCAATTATGTACTCCAGTTTAGTTGA

Protein Analysis

885

Amino Acids

100.08

Weight (kDa)

8.75

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 181 - 229 2.3e-09 PPR repeat family
PPR_3 PF13812 204 - 262 1.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 212 - 244 1.5e-08 PPR repeat
PPR PF01535 218 - 248 2.8e-06 PPR repeat
PPR_2 PF13041 223 - 263 4.2e-10 PPR repeat family
PPR_1 PF12854 247 - 278 5.3e-07 PPR repeat
PPR_2 PF13041 251 - 293 1.9e-08 PPR repeat family
PPR PF01535 253 - 283 7.2e-07 PPR repeat
PPR_3 PF13812 273 - 316 3.1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 321 - 349 5.5e-06 PPR repeat
PPR_3 PF13812 344 - 403 2.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 353 - 385 5.2e-07 PPR repeat
PPR_2 PF13041 357 - 405 2.6e-17 PPR repeat family
PPR PF01535 360 - 388 2.5e-07 PPR repeat
PPR_3 PF13812 384 - 436 4.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 388 - 419 4.9e-11 PPR repeat
PPR_2 PF13041 391 - 440 6.1e-17 PPR repeat family
PPR PF01535 394 - 424 1.3e-08 PPR repeat
PPR_1 PF12854 423 - 454 1.4e-06 PPR repeat
PPR_2 PF13041 427 - 475 5.6e-14 PPR repeat family
PPR PF01535 429 - 459 7.1e-06 PPR repeat
PPR_1 PF12854 497 - 525 5.6e-09 PPR repeat
PPR_2 PF13041 499 - 545 5.3e-14 PPR repeat family
PPR PF01535 500 - 528 3.6e-09 PPR repeat
TPR_24 PF23276 517 - 627 7.9e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 528 - 560 1.7e-07 PPR repeat
PPR_long PF17177 548 - 626 5.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 555 - 611 7.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 566 - 615 6e-11 PPR repeat family
PPR_1 PF12854 597 - 629 2.3e-10 PPR repeat
PPR_2 PF13041 601 - 637 3.7e-08 PPR repeat family
PPR PF01535 604 - 634 8.2e-08 PPR repeat
PPR_2 PF13041 699 - 745 7.1e-10 PPR repeat family
PPR_long PF17177 719 - 831 1e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 730 - 762 1.1e-07 PPR repeat
PPR_3 PF13812 730 - 779 2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 741 - 783 3.2e-12 PPR repeat family
PPR_3 PF13812 758 - 815 4.4e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 765 - 796 2.2e-11 PPR repeat
PPR_2 PF13041 769 - 818 2.1e-19 PPR repeat family
PPR PF01535 773 - 802 6e-08 PPR repeat
PPR_1 PF12854 800 - 832 3.8e-13 PPR repeat
PPR_2 PF13041 804 - 853 1.8e-15 PPR repeat family
PPR PF01535 807 - 837 4.6e-07 PPR repeat
PPR_1 PF12854 836 - 867 3.6e-07 PPR repeat
PPR_2 PF13041 839 - 876 6.5e-07 PPR repeat family
PPR PF01535 842 - 872 5.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19290 AT1G19290
fragaria_vesca FvH4_2g40380 FvH4_2g40380
malus_domestica MD15G1444300.v1.1
prunus_persica Prupe.1G585600_v2.0.a1
pyrus_communis pycom15g39140
rosa_chinensis RchiOBHm_Chr3g0486911 RchiOBHm_Chr6g0300361
rosa_laevigata RLG00000011344
rosa_multiflora Rmu_sc0001670.1_g000017
rosa_roxburghii Rroxscaffold_2G00128300 Rroxscaffold_7G00167860
rosa_rugosa Rorug06G0295300
rosa_samantha Rh3AG278100 Rh6AG408100 Rh6BG415400 Rh6CG422800 Rh6DG408400
rosa_wichuraiana Rw6G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 765, 1293, 2333, 2556
Acc36I ACCTGC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 535
AccI GTMKAC 1 cut(s) 653
AccIII TCCGGA 1 cut(s) 2200
AciI CCGC 9 cut(s) 25, 51, 118, 199, 528, 707, 710, 917, 1550
AclWI GGATC 2 cut(s) 119, 2370
AcsI RAATTY 5 cut(s) 167, 1354, 1928, 2043, 2356
AcuI CTGAAG 2 cut(s) 1404, 1546
AcvI CACGTG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 1282
AfaI GTAC 8 cut(s) 80, 140, 871, 1628, 1712, 1939, 2221, 2640
AfiI CCNNNNNNNGG 4 cut(s) 60, 894, 1265, 1306
AflIII ACRYGT 2 cut(s) 39, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 1358, 1390
Alw21I GWGCWC 1 cut(s) 1825
Alw26I GTCTC 1 cut(s) 2381
AlwI GGATC 2 cut(s) 119, 2370
Ama87I CYCGRG 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 2200
AoxI GGCC 3 cut(s) 246, 269, 885
ApeKI GCWGC 4 cut(s) 1923, 2182, 2240, 2243
ApoI RAATTY 5 cut(s) 167, 1354, 1928, 2043, 2356
ArsI GACNNNNNNTTYG 2 cut(s) 1883, 1915
AseI ATTAAT 1 cut(s) 1515
AspLEI GCGC 3 cut(s) 12, 1684, 2371
AsuC2I CCSGG 2 cut(s) 70, 71
AsuHPI GGTGA 5 cut(s) 682, 769, 841, 874, 2165
AvaI CYCGRG 1 cut(s) 69
AxyI CCTNAGG 1 cut(s) 1260
BanI GGYRCC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 1825
BbrPI CACGTG 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 1825
BbvI GCAGC 4 cut(s) 1935, 2169, 2227, 2230
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciVI GTATCC 1 cut(s) 2438
BclI TGATCA 6 cut(s) 328, 1092, 1621, 1914, 2541, 2601
BcnI CCSGG 2 cut(s) 70, 71
BcoDI GTCTC 1 cut(s) 2381
BfaI CTAG 5 cut(s) 312, 318, 1580, 1743, 2501
BfmI CTRYAG 2 cut(s) 892, 2449
BfoI RGCGCY 1 cut(s) 13
BfuAI ACCTGC 1 cut(s) 610
BfuI GTATCC 1 cut(s) 2438
BglII AGATCT 3 cut(s) 1154, 1432, 1557
BisI GCNGC 5 cut(s) 708, 1924, 2183, 2241, 2244
BlpI GCTNAGC 2 cut(s) 229, 474
BlsI GCNGC 5 cut(s) 709, 1925, 2184, 2242, 2245
BmcAI AGTACT 2 cut(s) 1628, 1939
Bme1390I CCNGG 2 cut(s) 70, 71
BmeT110I CYCGRG 1 cut(s) 69
BmiI GGNNCC 3 cut(s) 537, 951, 1380
BmrFI CCNGG 2 cut(s) 70, 71
BmsI GCATC 6 cut(s) 1012, 1245, 1752, 1774, 1842, 2146
BpmI CTGGAG 2 cut(s) 2627, 2631
Bpu10I CCTNAGC 1 cut(s) 5
Bpu1102I GCTNAGC 2 cut(s) 229, 474
BpuEI CTTGAG 4 cut(s) 191, 263, 446, 1289
BpuMI CCSGG 2 cut(s) 70, 71
Bsa29I ATCGAT 1 cut(s) 2439
BsaAI YACGTR 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 68, 69
BsaWI WCCGGW 3 cut(s) 108, 382, 2200
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 894, 1265, 1306
Bse118I RCCGGY 1 cut(s) 1491
Bse1I ACTGG 3 cut(s) 65, 789, 2644
Bse21I CCTNAGG 1 cut(s) 1260
Bse3DI GCAATG 2 cut(s) 602, 1849
BseAI TCCGGA 1 cut(s) 2200
BseCI ATCGAT 1 cut(s) 2439
BseDI CCNNGG 2 cut(s) 68, 69
BseGI GGATG 5 cut(s) 489, 652, 1024, 1207, 1857
BseLI CCNNNNNNNGG 4 cut(s) 60, 894, 1265, 1306
BseMI GCAATG 2 cut(s) 602, 1849
BseMII CTCAG 5 cut(s) 19, 465, 1274, 1607, 2279
BseNI ACTGG 3 cut(s) 65, 789, 2644
BseRI GAGGAG 6 cut(s) 113, 173, 935, 959, 962, 1568
BseXI GCAGC 4 cut(s) 1935, 2169, 2227, 2230
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 248, 271, 887
BshNI GGYRCC 1 cut(s) 535
BshVI ATCGAT 1 cut(s) 2439
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 1825
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 6 cut(s) 70, 109, 383, 644, 1492, 2201
BslFI GGGAC 3 cut(s) 28, 86, 1806
BslI CCNNNNNNNGG 4 cut(s) 60, 894, 1265, 1306
BsmAI GTCTC 1 cut(s) 2381
BsmFI GGGAC 3 cut(s) 28, 86, 1806
BsmI GAATGC 1 cut(s) 1330
BsnI GGCC 3 cut(s) 248, 271, 887
BsoBI CYCGRG 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 1825
Bsp13I TCCGGA 1 cut(s) 2200
Bsp1407I TGTACA 2 cut(s) 1710, 2219
Bsp1720I GCTNAGC 2 cut(s) 229, 474
BspACI CCGC 9 cut(s) 25, 51, 118, 199, 528, 707, 710, 917, 1550
BspANI GGCC 3 cut(s) 248, 271, 887
BspCNI CTCAG 5 cut(s) 18, 466, 1273, 1608, 2280
BspDI ATCGAT 1 cut(s) 2439
BspEI TCCGGA 1 cut(s) 2200
BspLI GGNNCC 3 cut(s) 537, 951, 1380
BspMAI CTGCAG 2 cut(s) 896, 2453
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 2 cut(s) 119, 2370
BspT107I GGYRCC 1 cut(s) 535
BsrDI GCAATG 2 cut(s) 602, 1849
BsrFI RCCGGY 1 cut(s) 1491
BsrGI TGTACA 2 cut(s) 1710, 2219
BsrI ACTGG 3 cut(s) 65, 789, 2644
BssAI RCCGGY 1 cut(s) 1491
BssECI CCNNGG 2 cut(s) 68, 69
BssNAI GTATAC 1 cut(s) 654
BssNI GRCGYC 1 cut(s) 144
Bst1107I GTATAC 1 cut(s) 654
Bst4CI ACNGT 9 cut(s) 138, 290, 445, 1282, 1400, 1442, 1810, 2219, 2467
Bst6I CTCTTC 2 cut(s) 1380, 2384
BstACI GRCGYC 1 cut(s) 144
BstAUI TGTACA 2 cut(s) 1710, 2219
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 4 cut(s) 226, 896, 1009, 1686
BstDEI CTNAG 6 cut(s) 5, 229, 474, 1260, 1616, 2288
BstENI CCTNNNNNAGG 3 cut(s) 892, 1263, 1304
BstF5I GGATG 5 cut(s) 489, 652, 1024, 1207, 1857
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 3 cut(s) 12, 1684, 2371
BstMAI GTCTC 1 cut(s) 2381
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 5 cut(s) 24, 230, 2240, 2414, 2457
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 2 cut(s) 68, 69
BstSFI CTRYAG 2 cut(s) 892, 2449
BstV1I GCAGC 4 cut(s) 1935, 2169, 2227, 2230
BstX2I RGATCY 4 cut(s) 111, 1154, 1432, 1557
BstYI RGATCY 4 cut(s) 111, 1154, 1432, 1557
BstZ17I GTATAC 1 cut(s) 654
Bsu15I ATCGAT 1 cut(s) 2439
Bsu36I CCTNAGG 1 cut(s) 1260
BsuI GTATCC 1 cut(s) 2438
BsuRI GGCC 3 cut(s) 248, 271, 887
BsuTUI ATCGAT 1 cut(s) 2439
BtsCI GGATG 5 cut(s) 489, 652, 1024, 1207, 1857
BtsI GCAGTG 1 cut(s) 2235
BtsIMutI CAGTG 7 cut(s) 58, 1278, 1447, 1732, 1806, 2222, 2235
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 4 cut(s) 226, 896, 1009, 1686
CfoI GCGC 3 cut(s) 12, 1684, 2371
Cfr10I RCCGGY 1 cut(s) 1491
Cfr9I CCCGGG 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 2439
CseI GACGC 1 cut(s) 152
Csp6I GTAC 8 cut(s) 79, 139, 870, 1627, 1711, 1938, 2220, 2639
CviAII CATG 1 cut(s) 503
CviQI GTAC 8 cut(s) 79, 139, 870, 1627, 1711, 1938, 2220, 2639
DdeI CTNAG 6 cut(s) 5, 229, 474, 1260, 1616, 2288
DraI TTTAAA 2 cut(s) 1062, 2485
DraIII CACNNNGTG 1 cut(s) 1282
Eam1104I CTCTTC 2 cut(s) 1380, 2384
EarI CTCTTC 2 cut(s) 1380, 2384
EciI GGCGGA 1 cut(s) 725
Ecl136II GAGCTC 1 cut(s) 1823
Eco147I AGGCCT 2 cut(s) 271, 887
Eco24I GRGCYC 1 cut(s) 1825
Eco53kI GAGCTC 1 cut(s) 1823
Eco57I CTGAAG 2 cut(s) 1404, 1546
Eco72I CACGTG 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 1260
Eco88I CYCGRG 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 1823
EcoNI CCTNNNNNAGG 3 cut(s) 892, 1263, 1304
EcoRI GAATTC 1 cut(s) 167
EcoT22I ATGCAT 2 cut(s) 499, 1767
EcoT38I GRGCYC 1 cut(s) 1825
FaeI CATG 1 cut(s) 506
FalI AAGNNNNNCTT 2 cut(s) 1839, 1871
FaqI GGGAC 3 cut(s) 28, 86, 1806
FatI CATG 1 cut(s) 502
FauI CCCGC 1 cut(s) 125
FauNDI CATATG 1 cut(s) 1149
FbaI TGATCA 6 cut(s) 328, 1092, 1621, 1914, 2541, 2601
FblI GTMKAC 1 cut(s) 653
Fnu4HI GCNGC 5 cut(s) 708, 1924, 2183, 2241, 2244
FokI GGATG 5 cut(s) 496, 659, 1031, 1214, 1864
FriOI GRGCYC 1 cut(s) 1825
Fsp4HI GCNGC 5 cut(s) 708, 1924, 2183, 2241, 2244
FspBI CTAG 5 cut(s) 312, 318, 1580, 1743, 2501
GlaI GCGC 3 cut(s) 11, 1683, 2370
GluI GCNGC 5 cut(s) 708, 1924, 2183, 2241, 2244
GsuI CTGGAG 2 cut(s) 2627, 2631
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 3 cut(s) 248, 271, 887
HapII CCGG 6 cut(s) 70, 109, 383, 644, 1492, 2201
HgaI GACGC 1 cut(s) 152
HhaI GCGC 3 cut(s) 12, 1684, 2371
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 506
Hin6I GCGC 3 cut(s) 10, 1682, 2369
HinP1I GCGC 3 cut(s) 10, 1682, 2369
HindIII AAGCTT 5 cut(s) 1109, 1653, 1863, 2472, 2585
HpaII CCGG 6 cut(s) 70, 109, 383, 644, 1492, 2201
HphI GGTGA 5 cut(s) 682, 769, 841, 874, 2165
Hpy166II GTNNAC 5 cut(s) 58, 613, 654, 2222, 2257
Hpy188I TCNGA 4 cut(s) 175, 838, 1224, 1661
Hpy8I GTNNAC 5 cut(s) 58, 613, 654, 2222, 2257
Hpy99I CGWCG 2 cut(s) 146, 445
HpyCH4III ACNGT 9 cut(s) 138, 290, 445, 1282, 1400, 1442, 1810, 2219, 2467
HpyCH4IV ACGT 2 cut(s) 39, 1814
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 230, 2240, 2414, 2457
HpyF3I CTNAG 6 cut(s) 5, 229, 474, 1260, 1616, 2288
HpySE526I ACGT 2 cut(s) 39, 1814
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 506
HspAI GCGC 3 cut(s) 10, 1682, 2369
Kpn2I TCCGGA 1 cut(s) 2200
Ksp22I TGATCA 6 cut(s) 328, 1092, 1621, 1914, 2541, 2601
LmnI GCTCC 6 cut(s) 809, 949, 1384, 1576, 1820, 2413
Lsp1109I GCAGC 4 cut(s) 1935, 2169, 2227, 2230
LweI GCATC 6 cut(s) 1012, 1245, 1752, 1774, 1842, 2146
MaeI CTAG 5 cut(s) 312, 318, 1580, 1743, 2501
MaeII ACGT 2 cut(s) 39, 1814
MaeIII GTNAC 4 cut(s) 1184, 1285, 1810, 2419
MboII GAAGA 8 cut(s) 229, 1397, 1442, 1552, 1661, 1760, 1999, 2371
MfeI CAATTG 1 cut(s) 1701
MflI RGATCY 4 cut(s) 111, 1154, 1432, 1557
MhlI GDGCHC 1 cut(s) 1825
MlyI GAGTC 1 cut(s) 2383
MmeI TCCRAC 1 cut(s) 157
Mph1103I ATGCAT 2 cut(s) 499, 1767
MroI TCCGGA 1 cut(s) 2200
MspI CCGG 6 cut(s) 70, 109, 383, 644, 1492, 2201
MspR9I CCNGG 2 cut(s) 70, 71
MunI CAATTG 1 cut(s) 1701
Mva1269I GAATGC 1 cut(s) 1330
MwoI GCNNNNNNNGC 5 cut(s) 24, 230, 2240, 2414, 2457
NciI CCSGG 2 cut(s) 70, 71
NdeI CATATG 1 cut(s) 1149
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 3 cut(s) 537, 951, 1380
NmeAIII GCCGAG 1 cut(s) 564
NsiI ATGCAT 2 cut(s) 499, 1767
NspI RCATGY 1 cut(s) 506
PceI AGGCCT 2 cut(s) 271, 887
PciI ACATGT 1 cut(s) 502
PctI GAATGC 1 cut(s) 1330
PkrI GCNGC 5 cut(s) 709, 1925, 2184, 2242, 2245
PleI GAGTC 1 cut(s) 2382
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
PpsI GAGTC 1 cut(s) 2382
Ppu21I YACGTR 1 cut(s) 40
PscI ACATGT 1 cut(s) 502
PshBI ATTAAT 1 cut(s) 1515
PsiI TTATAA 4 cut(s) 765, 1293, 2333, 2556
Psp124BI GAGCTC 1 cut(s) 1825
PspCI CACGTG 1 cut(s) 40
PspN4I GGNNCC 3 cut(s) 537, 951, 1380
PstI CTGCAG 2 cut(s) 896, 2453
PsuI RGATCY 4 cut(s) 111, 1154, 1432, 1557
RsaI GTAC 8 cut(s) 80, 140, 871, 1628, 1712, 1939, 2221, 2640
RsaNI GTAC 8 cut(s) 79, 139, 870, 1627, 1711, 1938, 2220, 2639
SacI GAGCTC 1 cut(s) 1825
SatI GCNGC 5 cut(s) 708, 1924, 2183, 2241, 2244
ScaI AGTACT 2 cut(s) 1628, 1939
SchI GAGTC 1 cut(s) 2383
ScrFI CCNGG 2 cut(s) 70, 71
SduI GDGCHC 1 cut(s) 1825
SfaNI GCATC 6 cut(s) 1012, 1245, 1752, 1774, 1842, 2146
SfcI CTRYAG 2 cut(s) 892, 2449
SmaI CCCGGG 1 cut(s) 71
SmlI CTYRAG 4 cut(s) 206, 278, 461, 1304
SmoI CTYRAG 4 cut(s) 206, 278, 461, 1304
SseBI AGGCCT 2 cut(s) 271, 887
SsiI CCGC 9 cut(s) 25, 51, 118, 199, 528, 707, 710, 917, 1550
SspI AATATT 2 cut(s) 1692, 2116
SspMI CTAG 5 cut(s) 312, 318, 1580, 1743, 2501
SstI GAGCTC 1 cut(s) 1825
StuI AGGCCT 2 cut(s) 271, 887
StyD4I CCNGG 2 cut(s) 68, 69
TaaI ACNGT 9 cut(s) 138, 290, 445, 1282, 1400, 1442, 1810, 2219, 2467
TaiI ACGT 2 cut(s) 42, 1817
TaqI TCGA 8 cut(s) 105, 251, 450, 662, 963, 1545, 2365, 2439
TatI WGTACW 6 cut(s) 78, 1626, 1710, 1937, 2219, 2638
TauI GCSGC 1 cut(s) 710
TscAI CASTG 7 cut(s) 65, 1285, 1447, 1732, 1813, 2229, 2242
TseI GCWGC 4 cut(s) 1923, 2182, 2240, 2243
TspGWI ACGGA 1 cut(s) 181
TspMI CCCGGG 1 cut(s) 69
TspRI CASTG 7 cut(s) 65, 1285, 1447, 1732, 1813, 2229, 2242
VspI ATTAAT 1 cut(s) 1515
XagI CCTNNNNNAGG 3 cut(s) 892, 1263, 1304
XapI RAATTY 5 cut(s) 167, 1354, 1928, 2043, 2356
XbaI TCTAGA 1 cut(s) 2500
XceI RCATGY 1 cut(s) 506
XmaI CCCGGG 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 653
XspI CTAG 5 cut(s) 312, 318, 1580, 1743, 2501
ZrmI AGTACT 2 cut(s) 1628, 1939
Zsp2I ATGCAT 2 cut(s) 499, 1767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.