Rroxscaffold_7G00167860

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010830
Physical Location & Seq
Reverse (-)
8865627 .. 8870730
5104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167860.1

Sequence Viewer

Length: 2655 bp
ATGCTCAGGCGCTACTGCTTCCACCGCCGACGACTCCACGTGTCCCGAACCGGACTCCACTGGAAGCCCCGGGACGAGTACAAGCTGACCCGACCCGAATTGCTCGACCGGATCTCCCGCCTCCTCGTCCTCCAACGGTACGACGCCCTTAACAACCTCTCCTTTCAATTCTCCGACCAACTCCTCAACACCGTCCTCCGGAAACTGAAGCTAAACCCTAACGCCTGCTTAGAGTTTTTCAAATTGGCCTCGAAGCAACAGAAATTCAGGCCCAATCTCAAGTCCTACTGTATAATTGTTCATATTTTGTCTCGTGCTCGAATGTACGATCAAACCAGAGCCTATTTGAATGAATTGGTTGCTCTCTGTAAGAGTAATTATCCGGCTTTCGTGGTCTGGAATGAGCTTGTTAGGGTTTATAGGGAGTTTACATTTTCTCCCACGGTTTTCGATATGATTCTCAAGGTGTTTGCTGAACAGGGCATGACAAAGTATGCATTACATGTGTTTGATAATATGGGGAAGTGCGGTAGGATGCCGAGTTTGAGGTCTTGTAATTCTTTGTTGAGTAATTTAGTCAGGAGTGGTGAATGTCACACTGCATTGCTTGTTTATGAGCAGATAGTTAGGTTGGGGATTGTTCCGGATGTTTATACGTGTTCGATAGTGGTGAGAGCATATTGTAAAGAGGGGAGAGTGAGCAGAGCGGCGGAGTTTGTGAAAGAAATGGAGAGTTCGGGTTTTGAGTTGAATGTAGTGACTTACAATGGTTTGATTGATGGGTATGCTGGTTTGGGAGATGTTGAAGGAGCAAAATCGGTGTTGAGGTTGATGTCTGAAAGGGGAATTAAGAGAAATGTGGTGAGTTGTACACTGTTGATGAAGGCTTACTGCAAGCAAGGTAAGATGGAGGAAGCGGAGGAGGTGCTTTGCAGTATAAAGGAGGAGGAGCCAGTGGTTGTGGATGAGCGTGCATATGGTGTGTTGGTAGATGGATATTGTAAAGCTGGCAAAATGGATGATGCTAGTAGGATACGTGATGAGTTGTTGAGGATTGGTTTAAAAATGAATACTATTATTTGCAACTCCTTGATCAACGGGTATTGTAAGCTTGGTCAAGTTTGGGAAGCAGATGGAGTATTGAAGCATATGAGATCTTGGAACTTAAAGCCAGATTCTTATAGTTACAATACCCTGATGGATGGTTACTGTAGGAAAGGTCAGACGAGTGAAGCATTGAAGCTTTTCGATGAGATGCCTGAGGGAGGAATCCATCAAACTGTGGTAACTTATAATACCCTTCTCAAGGGTTTATGTCAAGCAAATGCTTTTGATGATGCTTTACACCTTTGGCATTTAATGTTGAAAAGAGGGTTGGCTCCTGATGAGGTTAGCTACTGTTCTCTGCTTGATGGGTTTTTCAAGAAGGAAGATCTTGACGGCGCTATAACTCTGTGGAAAGATATTTTGGCAAAGGGTTTTACGAAAAGCCAGTTTGCTTTCAATACAATGATTAATGGGTTATGCAAGATGGGGAAATTGGTTGAAGCAGAGGAGATCTTCGATAAGATGAAGGAGCTAGGATATTTACCTGATGAGATAACTTATAGAACCCTGAGTGATGGGTACTGCAAAGTTGGGAATGTTGAAGAGGCTTTCAGAGTTAAAACTTTGATGGAAGGCCAGGCAATATTTCCTTCAATTGAAATGTACAATTCTCTCATCAGTGGTGTTTTTATGTCTAGAAATATAAGTAAAGTGATGAATCTTCTTGCTGAGATGCAGACAAGGGGACTATCCCTGAATACTGTAACATATGGAGCCCTTATCTCTGGTTGGTGCAATGAAGGGATGCTGGATAAAGCTTTTAGTTCATATTTTGAGATGATTGACATAGGGTTTGACACCAATTTGTTTATTTGCAGCAAATTTATCAGTACTCTGTATAGGCTTGGAAGGATTGATGAAGCAAGTATTCTGTTGCAGAAGTTAGTACATTATGATCCCTTTCCAGTTCAAAAAGGTGATATTACACAACACGAAATTCAAAAGTTTGCAGCTTCTCTTGATGAAAGTGCTAAAAGTGTCTGTCTTCCCAACAATGTCTTATACAACATTGCTATTTTTGGAATCTGCAAATCGGGGAAGGTTGGTGATGCAAGAAAATTTTTATCAGCTTTGTTGCTTAATGGCTTTTCTCCAGACAATTTCACATATTGTACCCTGATTCATGCCACTGCTGCTGCTGGTAATGTGAACGAGGCTTTCAGCTTACGAGATGAAATGCTGAGAAGGAATCTTGTTCCTAACATTACCACATATAATGCTCTTATAAATGGCTTGTGCAAAGCAGGAGAATTGGATCGAGCGCAGAGGCTTTTCTATAAACTTTGCGAGAAGGGGTTAGCTCCTAATGCTGTTACCTATAATATATTGATTGATGGATACTGCAGAACTGGCAATACTGTTGAAGCTTTTAAATTTAAAAACGAGATGATTCTAGAAGGGATTGTTCCCTCTATTATCACTTATTCTGCATTGATCAATGGTCTTTATAAGCAAGGAAATATGGAAGAATCTGTGAAGCTTTTGAGCCAAATGATCAAGGCTGGAGTGCAACAAAACCTAGTCAGTTATGTACTCCAGTTTAGTTGA

Protein Analysis

884

Amino Acids

100.14

Weight (kDa)

8.52

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 181 - 229 3.5e-08 PPR repeat family
PPR_3 PF13812 205 - 262 7.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 212 - 244 5.7e-08 PPR repeat
TPR_24 PF23276 223 - 343 4e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 224 - 263 1.5e-09 PPR repeat family
PPR_3 PF13812 240 - 284 2.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 247 - 278 1e-05 PPR repeat
PPR_2 PF13041 251 - 288 6.9e-07 PPR repeat family
PPR PF01535 253 - 283 4e-06 PPR repeat
PPR_3 PF13812 273 - 316 8.3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 321 - 348 6.2e-06 PPR repeat
PPR_2 PF13041 357 - 405 5.3e-16 PPR repeat family
PPR PF01535 360 - 388 2.4e-06 PPR repeat
PPR_3 PF13812 380 - 436 3.9e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 388 - 419 5.9e-13 PPR repeat
PPR_2 PF13041 391 - 431 7.8e-13 PPR repeat family
PPR PF01535 394 - 424 2.9e-10 PPR repeat
PPR_1 PF12854 423 - 454 3e-07 PPR repeat
PPR_2 PF13041 427 - 475 1.7e-15 PPR repeat family
PPR PF01535 429 - 459 4.1e-06 PPR repeat
PPR_long PF17177 475 - 622 1.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 497 - 545 1.2e-15 PPR repeat family
PPR_1 PF12854 497 - 525 9.3e-10 PPR repeat
PPR PF01535 500 - 528 1.2e-09 PPR repeat
TPR_24 PF23276 517 - 627 5.9e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 520 - 576 3.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 528 - 560 2.7e-09 PPR repeat
PPR_2 PF13041 566 - 615 1e-09 PPR repeat family
PPR_1 PF12854 597 - 623 9.4e-08 PPR repeat
PPR_2 PF13041 699 - 745 1.6e-09 PPR repeat family
PPR_long PF17177 720 - 822 4.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 730 - 762 1.1e-07 PPR repeat
PPR_3 PF13812 730 - 778 5.6e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 741 - 783 3.2e-12 PPR repeat family
PPR_3 PF13812 758 - 816 1.1e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 765 - 794 1.3e-11 PPR repeat
PPR_2 PF13041 769 - 818 4.4e-18 PPR repeat family
PPR PF01535 773 - 802 2.6e-07 PPR repeat
PPR_1 PF12854 800 - 832 3.9e-13 PPR repeat
PPR_2 PF13041 804 - 853 1.1e-16 PPR repeat family
PPR PF01535 807 - 837 8.1e-08 PPR repeat
PPR_1 PF12854 836 - 867 3.6e-07 PPR repeat
PPR_2 PF13041 839 - 879 3.3e-08 PPR repeat family
PPR PF01535 842 - 872 1.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19290 AT1G19290
fragaria_vesca FvH4_2g40380 FvH4_2g40380
malus_domestica MD15G1444300.v1.1
prunus_persica Prupe.1G585600_v2.0.a1
pyrus_communis pycom15g39140
rosa_chinensis RchiOBHm_Chr3g0486911 RchiOBHm_Chr6g0300361
rosa_laevigata RLG00000011344
rosa_multiflora Rmu_sc0001670.1_g000017
rosa_roxburghii Rroxscaffold_2G00128300 Rroxscaffold_7G00167860
rosa_rugosa Rorug06G0295300
rosa_samantha Rh3AG278100 Rh6AG408100 Rh6BG415400 Rh6CG422800 Rh6DG408400
rosa_wichuraiana Rw6G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1293, 2333, 2556
AccBSI CCGCTC 1 cut(s) 707
AccIII TCCGGA 2 cut(s) 198, 643
AciI CCGC 6 cut(s) 25, 118, 528, 707, 710, 917
AclWI GGATC 3 cut(s) 119, 1997, 2370
AcsI RAATTY 5 cut(s) 263, 1928, 2043, 2165, 2480
AcuI CTGAAG 1 cut(s) 227
AcvI CACGTG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 3 cut(s) 198, 1265, 1306
AflIII ACRYGT 3 cut(s) 39, 502, 656
AjnI CCWGG 1 cut(s) 1683
AjuI GAANNNNNNNTTGG 4 cut(s) 1358, 1390, 1451, 1483
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 3 cut(s) 119, 1997, 2370
Ama87I CYCGRG 1 cut(s) 69
Aor13HI TCCGGA 2 cut(s) 198, 643
AoxI GGCC 3 cut(s) 246, 269, 1681
ApeKI GCWGC 4 cut(s) 1923, 2057, 2240, 2243
ApoI RAATTY 5 cut(s) 263, 1928, 2043, 2165, 2480
ArsI GACNNNNNNTTYG 2 cut(s) 1883, 1915
AseI ATTAAT 1 cut(s) 1515
Asp700I GAANNNNTTC 1 cut(s) 1244
AspLEI GCGC 3 cut(s) 12, 1445, 2371
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 2 cut(s) 70, 71
AsuHPI GGTGA 5 cut(s) 599, 682, 874, 2036, 2165
AvaI CYCGRG 1 cut(s) 69
AxyI CCTNAGG 1 cut(s) 1260
BanII GRGCYC 1 cut(s) 1825
BauI CACGAG 1 cut(s) 312
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 2084
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 4 cut(s) 1935, 2069, 2227, 2230
BceAI ACGGC 1 cut(s) 1456
BciT130I CCWGG 1 cut(s) 1685
BciVI GTATCC 2 cut(s) 1026, 2438
BclI TGATCA 3 cut(s) 1092, 2541, 2601
BcnI CCSGG 2 cut(s) 70, 71
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
BfmI CTRYAG 2 cut(s) 1210, 2449
BfoI RGCGCY 2 cut(s) 13, 1446
BfuI GTATCC 2 cut(s) 1026, 2438
BglII AGATCT 3 cut(s) 1154, 1432, 1557
BisI GCNGC 5 cut(s) 708, 1924, 2058, 2241, 2244
BlsI GCNGC 5 cut(s) 709, 1925, 2059, 2242, 2245
BmcAI AGTACT 1 cut(s) 1939
Bme1390I CCNGG 3 cut(s) 70, 71, 1685
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 3 cut(s) 951, 1380, 1822
BmrFI CCNGG 3 cut(s) 70, 71, 1685
BmsI GCATC 7 cut(s) 525, 1012, 1245, 1327, 1770, 1842, 2146
BpiI GAAGAC 1 cut(s) 2084
BpmI CTGGAG 3 cut(s) 2184, 2627, 2631
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 3 cut(s) 263, 446, 1289
BpuMI CCSGG 2 cut(s) 70, 71
BsaAI YACGTR 3 cut(s) 40, 657, 1037
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 68, 69, 441
BsaWI WCCGGW 4 cut(s) 50, 108, 198, 643
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 143, 173, 421, 451
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 1265, 1306
Bse1I ACTGG 6 cut(s) 65, 953, 1492, 2012, 2461, 2644
Bse21I CCTNAGG 1 cut(s) 1260
Bse3DI GCAATG 3 cut(s) 602, 1849, 2115
BseAI TCCGGA 2 cut(s) 198, 643
BseBI CCWGG 1 cut(s) 1685
BseDI CCNNGG 3 cut(s) 68, 69, 441
BseGI GGATG 6 cut(s) 540, 652, 970, 1024, 1207, 1857
BseLI CCNNNNNNNGG 3 cut(s) 198, 1265, 1306
BseMI GCAATG 3 cut(s) 602, 1849, 2115
BseMII CTCAG 5 cut(s) 19, 1251, 1607, 1767, 2279
BseNI ACTGG 6 cut(s) 65, 953, 1492, 2012, 2461, 2644
BseRI GAGGAG 6 cut(s) 113, 173, 935, 959, 962, 1568
BseXI GCAGC 4 cut(s) 1935, 2069, 2227, 2230
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 248, 271, 1683
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 6 cut(s) 51, 70, 109, 199, 383, 644
BslFI GGGAC 3 cut(s) 28, 86, 1806
BslI CCNNNNNNNGG 3 cut(s) 198, 1265, 1306
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 3 cut(s) 28, 86, 1806
BsnI GGCC 3 cut(s) 248, 271, 1683
BsoBI CYCGRG 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 319, 1825
Bsp13I TCCGGA 2 cut(s) 198, 643
Bsp1407I TGTACA 2 cut(s) 869, 1710
BspACI CCGC 6 cut(s) 25, 118, 528, 707, 710, 917
BspANI GGCC 3 cut(s) 248, 271, 1683
BspCNI CTCAG 5 cut(s) 18, 1252, 1608, 1768, 2280
BspEI TCCGGA 2 cut(s) 198, 643
BspLI GGNNCC 3 cut(s) 951, 1380, 1822
BspMAI CTGCAG 1 cut(s) 2453
BspPI GGATC 3 cut(s) 119, 1997, 2370
BsrBI CCGCTC 1 cut(s) 707
BsrDI GCAATG 3 cut(s) 602, 1849, 2115
BsrGI TGTACA 2 cut(s) 869, 1710
BsrI ACTGG 6 cut(s) 65, 953, 1492, 2012, 2461, 2644
BssECI CCNNGG 3 cut(s) 68, 69, 441
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 1685
Bst6I CTCTTC 1 cut(s) 1644
BstACI GRCGYC 1 cut(s) 144
BstAUI TGTACA 2 cut(s) 869, 1710
BstBAI YACGTR 3 cut(s) 40, 657, 1037
BstC8I GCNNGC 4 cut(s) 226, 896, 972, 1009
BstDEI CTNAG 6 cut(s) 5, 229, 1260, 1616, 1776, 2288
BstDSI CCRYGG 1 cut(s) 441
BstENI CCTNNNNNAGG 2 cut(s) 1263, 1304
BstF5I GGATG 6 cut(s) 540, 652, 970, 1024, 1207, 1857
BstH2I RGCGCY 2 cut(s) 13, 1446
BstHHI GCGC 3 cut(s) 12, 1445, 2371
BstMAI GTCTC 1 cut(s) 315
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 24, 2240, 2414, 2457
BstNI CCWGG 1 cut(s) 1685
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 3 cut(s) 68, 69, 1683
BstSFI CTRYAG 2 cut(s) 1210, 2449
BstV1I GCAGC 4 cut(s) 1935, 2069, 2227, 2230
BstV2I GAAGAC 1 cut(s) 2084
BstX2I RGATCY 4 cut(s) 111, 1154, 1432, 1557
BstYI RGATCY 4 cut(s) 111, 1154, 1432, 1557
Bsu36I CCTNAGG 1 cut(s) 1260
BsuI GTATCC 2 cut(s) 1026, 2438
BsuRI GGCC 3 cut(s) 248, 271, 1683
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 6 cut(s) 540, 652, 970, 1024, 1207, 1857
BtsI GCAGTG 2 cut(s) 597, 2235
BtsIMutI CAGTG 6 cut(s) 58, 597, 872, 960, 1732, 2235
Cac8I GCNNGC 4 cut(s) 226, 896, 972, 1009
CfoI GCGC 3 cut(s) 12, 1445, 2371
Cfr13I GGNCC 1 cut(s) 270
Cfr9I CCCGGG 1 cut(s) 69
CseI GACGC 1 cut(s) 152
CviAII CATG 3 cut(s) 484, 503, 2231
DdeI CTNAG 6 cut(s) 5, 229, 1260, 1616, 1776, 2288
DraI TTTAAA 3 cut(s) 1062, 2479, 2485
Eam1104I CTCTTC 1 cut(s) 1644
EarI CTCTTC 1 cut(s) 1644
EciI GGCGGA 1 cut(s) 725
Eco24I GRGCYC 1 cut(s) 1825
Eco57I CTGAAG 1 cut(s) 227
Eco72I CACGTG 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 1260
Eco88I CYCGRG 1 cut(s) 69
EcoNI CCTNNNNNAGG 2 cut(s) 1263, 1304
EcoRII CCWGG 1 cut(s) 1683
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 1825
FaeI CATG 3 cut(s) 487, 506, 2234
FaqI GGGAC 3 cut(s) 28, 86, 1806
FatI CATG 3 cut(s) 483, 502, 2230
FauI CCCGC 1 cut(s) 125
FauNDI CATATG 3 cut(s) 976, 1149, 1816
FbaI TGATCA 3 cut(s) 1092, 2541, 2601
Fnu4HI GCNGC 5 cut(s) 708, 1924, 2058, 2241, 2244
FokI GGATG 6 cut(s) 547, 659, 977, 1031, 1214, 1864
FriOI GRGCYC 1 cut(s) 1825
Fsp4HI GCNGC 5 cut(s) 708, 1924, 2058, 2241, 2244
FspBI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
GlaI GCGC 3 cut(s) 11, 1444, 2370
GluI GCNGC 5 cut(s) 708, 1924, 2058, 2241, 2244
GsuI CTGGAG 3 cut(s) 2184, 2627, 2631
HaeII RGCGCY 2 cut(s) 13, 1446
HaeIII GGCC 3 cut(s) 248, 271, 1683
HapII CCGG 6 cut(s) 51, 70, 109, 199, 383, 644
HgaI GACGC 1 cut(s) 152
HhaI GCGC 3 cut(s) 12, 1445, 2371
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 3 cut(s) 487, 506, 2234
Hin6I GCGC 3 cut(s) 10, 1443, 2369
HinP1I GCGC 3 cut(s) 10, 1443, 2369
HindIII AAGCTT 5 cut(s) 1109, 1241, 1863, 2472, 2585
HpaII CCGG 6 cut(s) 51, 70, 109, 199, 383, 644
HphI GGTGA 5 cut(s) 599, 682, 874, 2036, 2165
Hpy166II GTNNAC 3 cut(s) 429, 872, 2257
Hpy188I TCNGA 4 cut(s) 175, 838, 1224, 1661
Hpy8I GTNNAC 3 cut(s) 429, 872, 2257
Hpy99I CGWCG 2 cut(s) 33, 146
HpyCH4IV ACGT 3 cut(s) 39, 656, 1036
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 2240, 2414, 2457
HpyF3I CTNAG 6 cut(s) 5, 229, 1260, 1616, 1776, 2288
HpySE526I ACGT 3 cut(s) 39, 656, 1036
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 3 cut(s) 487, 506, 2234
HspAI GCGC 3 cut(s) 10, 1443, 2369
Kpn2I TCCGGA 2 cut(s) 198, 643
Ksp22I TGATCA 3 cut(s) 1092, 2541, 2601
LmnI GCTCC 6 cut(s) 809, 949, 1384, 1576, 1820, 2413
Lsp1109I GCAGC 4 cut(s) 1935, 2069, 2227, 2230
LweI GCATC 7 cut(s) 525, 1012, 1245, 1327, 1770, 1842, 2146
MaeI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
MaeII ACGT 3 cut(s) 39, 656, 1036
MaeIII GTNAC 7 cut(s) 593, 757, 1184, 1205, 1285, 1810, 2419
MbiI CCGCTC 1 cut(s) 707
MboII GAAGA 6 cut(s) 1442, 1552, 1661, 1760, 2084, 2585
MfeI CAATTG 1 cut(s) 1701
MflI RGATCY 4 cut(s) 111, 1154, 1432, 1557
MhlI GDGCHC 2 cut(s) 319, 1825
MlyI GAGTC 2 cut(s) 27, 48
MmeI TCCRAC 2 cut(s) 157, 198
Mph1103I ATGCAT 1 cut(s) 499
MroI TCCGGA 2 cut(s) 198, 643
MroXI GAANNNNTTC 1 cut(s) 1244
MspI CCGG 6 cut(s) 51, 70, 109, 199, 383, 644
MspR9I CCNGG 3 cut(s) 70, 71, 1685
MunI CAATTG 1 cut(s) 1701
MvaI CCWGG 1 cut(s) 1685
MwoI GCNNNNNNNGC 4 cut(s) 24, 2240, 2414, 2457
NciI CCSGG 2 cut(s) 70, 71
NdeI CATATG 3 cut(s) 976, 1149, 1816
NlaIII CATG 3 cut(s) 487, 506, 2234
NlaIV GGNNCC 3 cut(s) 951, 1380, 1822
NmeAIII GCCGAG 1 cut(s) 564
NmuCI GTSAC 2 cut(s) 593, 757
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 506
PciI ACATGT 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 1244
PfeI GAWTC 9 cut(s) 457, 1175, 1269, 1765, 2130, 2227, 2296, 2497, 2576
PkrI GCNGC 5 cut(s) 709, 1925, 2059, 2242, 2245
PleI GAGTC 2 cut(s) 27, 48
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
PpsI GAGTC 2 cut(s) 27, 48
Ppu21I YACGTR 3 cut(s) 40, 657, 1037
PscI ACATGT 1 cut(s) 502
PshBI ATTAAT 1 cut(s) 1515
PsiI TTATAA 3 cut(s) 1293, 2333, 2556
Psp6I CCWGG 1 cut(s) 1683
PspCI CACGTG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 1683
PspN4I GGNNCC 3 cut(s) 951, 1380, 1822
PspPI GGNCC 1 cut(s) 270
PsrI GAACNNNNNNTAC 2 cut(s) 2446, 2478
PstI CTGCAG 1 cut(s) 2453
PsuI RGATCY 4 cut(s) 111, 1154, 1432, 1557
SatI GCNGC 5 cut(s) 708, 1924, 2058, 2241, 2244
Sau96I GGNCC 1 cut(s) 270
ScaI AGTACT 1 cut(s) 1939
SchI GAGTC 2 cut(s) 27, 48
ScrFI CCNGG 3 cut(s) 70, 71, 1685
SduI GDGCHC 2 cut(s) 319, 1825
SfaNI GCATC 7 cut(s) 525, 1012, 1245, 1327, 1770, 1842, 2146
SfcI CTRYAG 2 cut(s) 1210, 2449
SmaI CCCGGG 1 cut(s) 71
SmlI CTYRAG 3 cut(s) 278, 461, 1304
SmoI CTYRAG 3 cut(s) 278, 461, 1304
SsiI CCGC 6 cut(s) 25, 118, 528, 707, 710, 917
SspI AATATT 1 cut(s) 1692
SspMI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
StyD4I CCNGG 3 cut(s) 68, 69, 1683
TaiI ACGT 3 cut(s) 42, 659, 1039
TaqI TCGA 8 cut(s) 105, 251, 319, 450, 662, 1248, 1563, 2365
TatI WGTACW 6 cut(s) 78, 869, 1710, 1937, 1993, 2638
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 9 cut(s) 457, 1175, 1269, 1765, 2130, 2227, 2296, 2497, 2576
TscAI CASTG 6 cut(s) 65, 604, 879, 960, 1732, 2242
TseFI GTSAC 2 cut(s) 593, 757
TseI GCWGC 4 cut(s) 1923, 2057, 2240, 2243
Tsp45I GTSAC 2 cut(s) 593, 757
TspMI CCCGGG 1 cut(s) 69
TspRI CASTG 6 cut(s) 65, 604, 879, 960, 1732, 2242
VspI ATTAAT 1 cut(s) 1515
XagI CCTNNNNNAGG 2 cut(s) 1263, 1304
XapI RAATTY 5 cut(s) 263, 1928, 2043, 2165, 2480
XbaI TCTAGA 2 cut(s) 1742, 2500
XceI RCATGY 1 cut(s) 506
XmaI CCCGGG 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 1244
XspI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
ZrmI AGTACT 1 cut(s) 1939
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.