Rh6CG422800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010830
Physical Location & Seq
Forward (+)
60561018 .. 60566243
5226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG422800.1

Sequence Viewer

Length: 2655 bp
ATGCTCAGGCGCTACTGCTTCCACCGCCGACGACTCCACGTGTCCCGAACCGGACTCCACTGGAAGCCCCGGGACGAGTACAAGCTGACCCGACCCGAATTGCTCGACCGGATCTCCCGCCTCCTCGTCCTCCAACGGTACGACGCCCTTAACAACCTCTCTTTTGAATTCTCCGACCAACTCCTCAACACCGTTCTCCGGAAACTGAAGCTAAACCCTAACGCCTGCTTAGAGTTTTTCAAATTGGCCTCGAAGCAACAGAAATTCAGGCCCAATCTCAATTCCTACTGTATAATTGTTCATATTTTGTCTCGTGCTCGAATGCACGATCAAACCAGAGCCTATTTGAATGAATTGGTTGCTCTCTGTAAGAGTAATTATCCGGCTTTCGTGGTCTGGAATGAGCTTGTTAGGGTTTATAGGGAGTTTACATTTTCTCCCACGGTTTTCGATATGATTCTCAAGGTGTTTGCTGAACAAGGCATGACAAAGTATGCGTTGCATGTGTTTGATAATATGGGCAAGTGCGGTAGGGTGCCGAGTTTGAGGTCTTGTAATTCTTTGTTGAGTAATTTAGTCAGGAGTGGTGAATGTCACACTGCATTGCTTGTTTATGAGCAGATAGTTAGGTTGGGGATTGTTCCGGATGTTTATACGTGTTCGATAGTGGTGAGAGCATATTGTAAAGAGGGGAGAGTGAGCAGAGCGGCGGAGATTGTGAAAGAAATGGAGAGTTCGGGTTTTGAGTTGAATGTAGTGACTTACAATGGTTTGATTGATGGGTATGCTGGTCTGGGAGATGTTGGAGGAGCGAAATCGGTGTTGAGGTTGATGTCTGAAAGGGGAATTAAGAGAAATGTGGTGAGTTGTACACTGTTGATGAAGGCTTACTGCAAGCAAGGTAAGATGGAGGAAGCGGAGCAGGTGCTTCGCGGTATAAAGGAGGAGGAGCCAGTGGTTGTGGATGAGCGTGCATATGGTGTGTTGGTAGATGGATATTGTAAAGCTGGCAGAATGGATGATGCTAGTAGGATACATGATGAGTTGTTGAGGATTGGTTTAAAAATGAATACTATCATTTGCAACTCCTTGATCAACGGGTATTGTAAGCTTGGTCAAGTTTGGGAAGCAGAGGGAGTATTGAAGCATATGAGATCTTGGAACTTAAAGCCAGATTCTTATAGTTACAATACCCTGATGGATGGTTACTGTAGGAAAGGTCAGACGAGTGAAGCATTGAAGCTTTTCGATGAGATGCCTGAGGGAGGAATCCATCAAACTGTGGTAACTTATAATACCATTCTCAAGGGTTTATGTCAAGCAAATGCTTTTGATGATGCTTTACACCTTTGGCATTTAATGTTGAAAAGAGGGTTGGCTCCTGATGAGGTTAGCTACTGTTCTCTGCTTGATGGGTTTTTCAAGAAGGAAGATCTTGACGGCGCTATAACTCTGTGGAAAGATATTTTGGCAAAGGGTTTTACGAAAAGCCGGTTTGCTTTCAATACAATGATTAATGGGTTATGCAAGATGGGGAAATTGGTTGAAGCGGAGGAGATCTTCGATAAGATGAAGGAACTAGGATATTTACCTGACGAGATAACTTATAGAACCCTGAGTGATGGGTACTGCAAAGTTGGGAATGTTGAAGAAGCCTTCAGAGTTAAAACTTTGATGGAAGGCCAGGCAATATTTCCTTCGATTGAAATGTACAATTCTCTCATCAGTGGTGTTTTTATGTCTAGAAATATAAGTAAAGTGATGAATCTTCTTGCTGAGATGCAGACAAGGGGACTATCCCCTAATACTGTAACATATGGAGCCCTTATCTCTGGTTGGTGCAATGAAGGGATGCTGGATAAAGCTTTTAGTTCATATTTTGAGATGATTGACAAAGGGTTTGACACCAATTTGTTTATTTGCAGCAAATTTATCAGTACTCTGTATAGGCTTGGAAGGATTGATGAAGCAAGTATTCTGTTGCAGAAGTTAGTACATTATGATCCCTTTCCAGTTCAAAAAGGTGATATTACACAACGCGAAATTCAAAAGTTTGCAGATTCTCTTGATGAAAGTGCTATAAGTGTCTGTCTTCCCAACAATGTCTTATACAACATTGCCATCTTTGGAATCTGCAAATCGGGGAAGGTTGGTGATGCAAGAAGATTTTTATCAGCTTTGTTACTTAGTGGCTTTTCTCCAGACAATTTCACATATTGTACGCTGATTCATGCCACTGCTGCTGCTGGGAATGTGAACGAGGCTTTCAGCTTACGAGATGAAATGCTGAGAAGGAATCTTGTTCCTAACATTACCACATATAATGCTCTTATAAATGGCTTGTGCAAAGTAGGAGAATTGGATCGAGCGCAGAGGCTTTTCTATAAACTTTGCAAGAAGGGGTTAGCTCCTAATGCTGTTACATATAATATATTGATTGATGGATACTGCAGAACTGGCAATACTGTTGAAGCTTTTAAATTTAAAGACGAGATGATTCTAGAAGGGATTGTTCCCTCTATAATCACTTATTCTGCATTGATCAATGGTCTTTATAAGCAAGGAAATATGGAAGAATCTGTGAAGCTTTTGAGCCAAATGATCAAGGCTGGAGTGCAACAAAACCTAGTCAGTTATGTACTCCAGTTTAGTTGA

Protein Analysis

884

Amino Acids

100.11

Weight (kDa)

8.63

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 181 - 229 3.5e-08 PPR repeat family
PPR_3 PF13812 205 - 262 4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 212 - 244 1.3e-07 PPR repeat
PPR_2 PF13041 223 - 263 1.1e-09 PPR repeat family
TPR_24 PF23276 223 - 347 1.2e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 251 - 288 1e-05 PPR repeat family
PPR_3 PF13812 273 - 316 8.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 321 - 348 3.5e-06 PPR repeat
PPR_1 PF12854 353 - 385 6e-07 PPR repeat
PPR_2 PF13041 357 - 404 1.4e-15 PPR repeat family
PPR PF01535 360 - 388 7.4e-07 PPR repeat
TPR_24 PF23276 377 - 447 8.2e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 380 - 436 2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 388 - 419 5.9e-13 PPR repeat
PPR PF01535 394 - 424 2.9e-10 PPR repeat
PPR_2 PF13041 394 - 431 1.5e-11 PPR repeat family
PPR_1 PF12854 423 - 454 7e-07 PPR repeat
PPR_2 PF13041 427 - 475 2.4e-15 PPR repeat family
PPR_long PF17177 475 - 623 3.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 497 - 525 1.1e-09 PPR repeat
PPR_2 PF13041 499 - 545 2.1e-15 PPR repeat family
PPR PF01535 500 - 528 1.2e-09 PPR repeat
TPR_24 PF23276 517 - 627 5e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 520 - 576 3.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 528 - 560 2.7e-09 PPR repeat
PPR_3 PF13812 555 - 611 8.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 566 - 615 3.9e-11 PPR repeat family
PPR_1 PF12854 597 - 623 4.3e-09 PPR repeat
PPR_2 PF13041 601 - 638 8.3e-07 PPR repeat family
PPR PF01535 604 - 634 5.6e-06 PPR repeat
PPR_2 PF13041 699 - 745 4.4e-09 PPR repeat family
PPR_long PF17177 719 - 822 1.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 731 - 779 2.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 731 - 762 1.3e-07 PPR repeat
PPR_2 PF13041 741 - 783 3.2e-12 PPR repeat family
PPR_3 PF13812 758 - 816 8.1e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 765 - 794 1.1e-10 PPR repeat
PPR_2 PF13041 769 - 818 2.7e-18 PPR repeat family
PPR PF01535 773 - 802 1.2e-06 PPR repeat
PPR_1 PF12854 800 - 832 2e-13 PPR repeat
PPR_2 PF13041 804 - 853 2.2e-16 PPR repeat family
PPR PF01535 807 - 837 6.9e-08 PPR repeat
PPR_1 PF12854 836 - 867 3.6e-07 PPR repeat
PPR_2 PF13041 839 - 879 3.3e-08 PPR repeat family
PPR PF01535 842 - 872 1.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19290 AT1G19290
fragaria_vesca FvH4_2g40380 FvH4_2g40380
malus_domestica MD15G1444300.v1.1
prunus_persica Prupe.1G585600_v2.0.a1
pyrus_communis pycom15g39140
rosa_chinensis RchiOBHm_Chr3g0486911 RchiOBHm_Chr6g0300361
rosa_laevigata RLG00000011344
rosa_multiflora Rmu_sc0001670.1_g000017
rosa_roxburghii Rroxscaffold_2G00128300 Rroxscaffold_7G00167860
rosa_rugosa Rorug06G0295300
rosa_samantha Rh3AG278100 Rh6AG408100 Rh6BG415400 Rh6CG422800 Rh6DG408400
rosa_wichuraiana Rw6G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1293, 2333, 2556
AarI CACCTGC 1 cut(s) 913
Acc36I ACCTGC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 535
AccBSI CCGCTC 1 cut(s) 707
AccII CGCG 2 cut(s) 933, 2040
AccIII TCCGGA 2 cut(s) 198, 643
AciI CCGC 8 cut(s) 25, 118, 528, 707, 710, 917, 933, 1550
AclWI GGATC 3 cut(s) 119, 1997, 2370
AcsI RAATTY 5 cut(s) 167, 263, 1928, 2043, 2480
AcuI CTGAAG 2 cut(s) 227, 1642
AcvI CACGTG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 9 cut(s) 80, 140, 871, 1628, 1712, 1939, 1995, 2221, 2640
AfiI CCNNNNNNNGG 2 cut(s) 198, 1265
AflIII ACRYGT 2 cut(s) 39, 656
AjnI CCWGG 1 cut(s) 1683
AjuI GAANNNNNNNTTGG 4 cut(s) 1358, 1390, 1451, 1483
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 3 cut(s) 119, 1997, 2370
Ama87I CYCGRG 1 cut(s) 69
Aor13HI TCCGGA 2 cut(s) 198, 643
AoxI GGCC 3 cut(s) 246, 269, 1681
ApeKI GCWGC 3 cut(s) 1923, 2240, 2243
ApoI RAATTY 5 cut(s) 167, 263, 1928, 2043, 2480
ArsI GACNNNNNNTTYG 2 cut(s) 1883, 1915
AseI ATTAAT 1 cut(s) 1515
Asp700I GAANNNNTTC 1 cut(s) 1244
AspLEI GCGC 3 cut(s) 12, 1445, 2371
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 2 cut(s) 70, 71
AsuHPI GGTGA 5 cut(s) 599, 682, 874, 2036, 2165
AvaI CYCGRG 1 cut(s) 69
AxyI CCTNAGG 1 cut(s) 1260
BanI GGYRCC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 1825
BauI CACGAG 1 cut(s) 312
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 2084
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 3 cut(s) 1935, 2227, 2230
BceAI ACGGC 1 cut(s) 1456
BcgI CGANNNNNNTGC 2 cut(s) 911, 945
BciT130I CCWGG 1 cut(s) 1685
BciVI GTATCC 2 cut(s) 1026, 2438
BclI TGATCA 3 cut(s) 1092, 2541, 2601
BcnI CCSGG 2 cut(s) 70, 71
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
BfmI CTRYAG 2 cut(s) 1210, 2449
BfoI RGCGCY 2 cut(s) 13, 1446
BfuAI ACCTGC 1 cut(s) 913
BfuI GTATCC 2 cut(s) 1026, 2438
BglII AGATCT 3 cut(s) 1154, 1432, 1557
BisI GCNGC 4 cut(s) 708, 1924, 2241, 2244
BlsI GCNGC 4 cut(s) 709, 1925, 2242, 2245
BmcAI AGTACT 1 cut(s) 1939
Bme1390I CCNGG 3 cut(s) 70, 71, 1685
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 4 cut(s) 537, 951, 1380, 1822
BmrFI CCNGG 3 cut(s) 70, 71, 1685
BmsI GCATC 6 cut(s) 1012, 1245, 1327, 1770, 1842, 2146
BpiI GAAGAC 1 cut(s) 2084
BpmI CTGGAG 3 cut(s) 2184, 2627, 2631
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 2 cut(s) 446, 1289
BpuMI CCSGG 2 cut(s) 70, 71
BsaAI YACGTR 2 cut(s) 40, 657
BsaBI GATNNNNATC 1 cut(s) 2170
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 68, 69, 441
BsaWI WCCGGW 4 cut(s) 50, 108, 198, 643
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 1265
Bse118I RCCGGY 1 cut(s) 1491
Bse1I ACTGG 5 cut(s) 65, 953, 2012, 2461, 2644
Bse21I CCTNAGG 1 cut(s) 1260
Bse3DI GCAATG 3 cut(s) 602, 1849, 2115
Bse8I GATNNNNATC 1 cut(s) 2170
BseAI TCCGGA 2 cut(s) 198, 643
BseBI CCWGG 1 cut(s) 1685
BseDI CCNNGG 3 cut(s) 68, 69, 441
BseGI GGATG 5 cut(s) 652, 970, 1024, 1207, 1857
BseJI GATNNNNATC 1 cut(s) 2170
BseLI CCNNNNNNNGG 2 cut(s) 198, 1265
BseMI GCAATG 3 cut(s) 602, 1849, 2115
BseMII CTCAG 5 cut(s) 19, 1251, 1607, 1767, 2279
BseNI ACTGG 5 cut(s) 65, 953, 2012, 2461, 2644
BseRI GAGGAG 6 cut(s) 113, 173, 822, 959, 962, 1568
BseXI GCAGC 3 cut(s) 1935, 2227, 2230
BseYI CCCAGC 1 cut(s) 2246
Bsh1236I CGCG 2 cut(s) 933, 2040
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 248, 271, 1683
BshNI GGYRCC 1 cut(s) 535
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 7 cut(s) 51, 70, 109, 199, 383, 644, 1492
BslFI GGGAC 3 cut(s) 28, 86, 1806
BslI CCNNNNNNNGG 2 cut(s) 198, 1265
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 3 cut(s) 28, 86, 1806
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 3 cut(s) 248, 271, 1683
BsoBI CYCGRG 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 319, 1825
Bsp13I TCCGGA 2 cut(s) 198, 643
Bsp1407I TGTACA 2 cut(s) 869, 1710
BspACI CCGC 8 cut(s) 25, 118, 528, 707, 710, 917, 933, 1550
BspANI GGCC 3 cut(s) 248, 271, 1683
BspCNI CTCAG 5 cut(s) 18, 1252, 1608, 1768, 2280
BspEI TCCGGA 2 cut(s) 198, 643
BspFNI CGCG 2 cut(s) 933, 2040
BspLI GGNNCC 4 cut(s) 537, 951, 1380, 1822
BspMAI CTGCAG 1 cut(s) 2453
BspMI ACCTGC 1 cut(s) 913
BspPI GGATC 3 cut(s) 119, 1997, 2370
BspT107I GGYRCC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 707
BsrDI GCAATG 3 cut(s) 602, 1849, 2115
BsrFI RCCGGY 1 cut(s) 1491
BsrGI TGTACA 2 cut(s) 869, 1710
BsrI ACTGG 5 cut(s) 65, 953, 2012, 2461, 2644
BssAI RCCGGY 1 cut(s) 1491
BssECI CCNNGG 3 cut(s) 68, 69, 441
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 1685
BstACI GRCGYC 1 cut(s) 144
BstAUI TGTACA 2 cut(s) 869, 1710
BstBAI YACGTR 2 cut(s) 40, 657
BstC8I GCNNGC 4 cut(s) 226, 896, 972, 1009
BstDEI CTNAG 7 cut(s) 5, 229, 1260, 1616, 1776, 2186, 2288
BstDSI CCRYGG 1 cut(s) 441
BstENI CCTNNNNNAGG 1 cut(s) 1263
BstF5I GGATG 5 cut(s) 652, 970, 1024, 1207, 1857
BstFNI CGCG 2 cut(s) 933, 2040
BstH2I RGCGCY 2 cut(s) 13, 1446
BstHHI GCGC 3 cut(s) 12, 1445, 2371
BstMAI GTCTC 1 cut(s) 315
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 24, 2240, 2414, 2457
BstNI CCWGG 1 cut(s) 1685
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 3 cut(s) 68, 69, 1683
BstSFI CTRYAG 2 cut(s) 1210, 2449
BstUI CGCG 2 cut(s) 933, 2040
BstV1I GCAGC 3 cut(s) 1935, 2227, 2230
BstV2I GAAGAC 1 cut(s) 2084
BstX2I RGATCY 4 cut(s) 111, 1154, 1432, 1557
BstYI RGATCY 4 cut(s) 111, 1154, 1432, 1557
Bsu36I CCTNAGG 1 cut(s) 1260
BsuI GTATCC 2 cut(s) 1026, 2438
BsuRI GGCC 3 cut(s) 248, 271, 1683
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 5 cut(s) 652, 970, 1024, 1207, 1857
BtsI GCAGTG 2 cut(s) 597, 2235
BtsIMutI CAGTG 6 cut(s) 58, 597, 872, 960, 1732, 2235
BveI ACCTGC 1 cut(s) 913
Cac8I GCNNGC 4 cut(s) 226, 896, 972, 1009
CfoI GCGC 3 cut(s) 12, 1445, 2371
Cfr10I RCCGGY 1 cut(s) 1491
Cfr13I GGNCC 1 cut(s) 270
Cfr9I CCCGGG 1 cut(s) 69
CseI GACGC 1 cut(s) 152
Csp6I GTAC 9 cut(s) 79, 139, 870, 1627, 1711, 1938, 1994, 2220, 2639
CviAII CATG 4 cut(s) 484, 503, 1037, 2231
CviQI GTAC 9 cut(s) 79, 139, 870, 1627, 1711, 1938, 1994, 2220, 2639
DdeI CTNAG 7 cut(s) 5, 229, 1260, 1616, 1776, 2186, 2288
DraI TTTAAA 3 cut(s) 1062, 2479, 2485
EciI GGCGGA 1 cut(s) 725
Eco24I GRGCYC 1 cut(s) 1825
Eco57I CTGAAG 2 cut(s) 227, 1642
Eco72I CACGTG 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 1260
Eco88I CYCGRG 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 1263
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 1683
EcoT38I GRGCYC 1 cut(s) 1825
FaeI CATG 4 cut(s) 487, 506, 1040, 2234
FaqI GGGAC 3 cut(s) 28, 86, 1806
FatI CATG 4 cut(s) 483, 502, 1036, 2230
FauI CCCGC 1 cut(s) 125
FauNDI CATATG 3 cut(s) 976, 1149, 1816
FbaI TGATCA 3 cut(s) 1092, 2541, 2601
Fnu4HI GCNGC 4 cut(s) 708, 1924, 2241, 2244
FokI GGATG 5 cut(s) 659, 977, 1031, 1214, 1864
FriOI GRGCYC 1 cut(s) 1825
Fsp4HI GCNGC 4 cut(s) 708, 1924, 2241, 2244
FspBI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
GlaI GCGC 3 cut(s) 11, 1444, 2370
GluI GCNGC 4 cut(s) 708, 1924, 2241, 2244
GsaI CCCAGC 1 cut(s) 2250
GsuI CTGGAG 3 cut(s) 2184, 2627, 2631
HaeII RGCGCY 2 cut(s) 13, 1446
HaeIII GGCC 3 cut(s) 248, 271, 1683
HapII CCGG 7 cut(s) 51, 70, 109, 199, 383, 644, 1492
HgaI GACGC 1 cut(s) 152
HhaI GCGC 3 cut(s) 12, 1445, 2371
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 4 cut(s) 487, 506, 1040, 2234
Hin6I GCGC 3 cut(s) 10, 1443, 2369
HinP1I GCGC 3 cut(s) 10, 1443, 2369
HindIII AAGCTT 5 cut(s) 1109, 1241, 1863, 2472, 2585
HpaII CCGG 7 cut(s) 51, 70, 109, 199, 383, 644, 1492
HphI GGTGA 5 cut(s) 599, 682, 874, 2036, 2165
Hpy166II GTNNAC 3 cut(s) 429, 872, 2257
Hpy188I TCNGA 4 cut(s) 175, 838, 1224, 1661
Hpy8I GTNNAC 3 cut(s) 429, 872, 2257
Hpy99I CGWCG 2 cut(s) 33, 146
HpyCH4IV ACGT 2 cut(s) 39, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 2240, 2414, 2457
HpyF3I CTNAG 7 cut(s) 5, 229, 1260, 1616, 1776, 2186, 2288
HpySE526I ACGT 2 cut(s) 39, 656
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 4 cut(s) 487, 506, 1040, 2234
HspAI GCGC 3 cut(s) 10, 1443, 2369
Kpn2I TCCGGA 2 cut(s) 198, 643
Ksp22I TGATCA 3 cut(s) 1092, 2541, 2601
LmnI GCTCC 6 cut(s) 809, 919, 949, 1384, 1820, 2413
Lsp1109I GCAGC 3 cut(s) 1935, 2227, 2230
LweI GCATC 6 cut(s) 1012, 1245, 1327, 1770, 1842, 2146
MaeI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
MaeII ACGT 2 cut(s) 39, 656
MaeIII GTNAC 8 cut(s) 593, 757, 1184, 1205, 1285, 1810, 2181, 2419
MbiI CCGCTC 1 cut(s) 707
MboII GAAGA 7 cut(s) 1442, 1552, 1661, 1760, 2084, 2175, 2585
MflI RGATCY 4 cut(s) 111, 1154, 1432, 1557
MhlI GDGCHC 2 cut(s) 319, 1825
MlyI GAGTC 2 cut(s) 27, 48
MmeI TCCRAC 3 cut(s) 157, 198, 784
MroI TCCGGA 2 cut(s) 198, 643
MroXI GAANNNNTTC 1 cut(s) 1244
MseI TTAA 9 cut(s) 150, 849, 1061, 1166, 1358, 1515, 1665, 2478, 2484
MspI CCGG 7 cut(s) 51, 70, 109, 199, 383, 644, 1492
MspR9I CCNGG 3 cut(s) 70, 71, 1685
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 1 cut(s) 1685
MvnI CGCG 2 cut(s) 933, 2040
MwoI GCNNNNNNNGC 4 cut(s) 24, 2240, 2414, 2457
NciI CCSGG 2 cut(s) 70, 71
NdeI CATATG 3 cut(s) 976, 1149, 1816
NlaIII CATG 4 cut(s) 487, 506, 1040, 2234
NlaIV GGNNCC 4 cut(s) 537, 951, 1380, 1822
NmeAIII GCCGAG 1 cut(s) 564
NmuCI GTSAC 2 cut(s) 593, 757
NspI RCATGY 1 cut(s) 506
PaqCI CACCTGC 1 cut(s) 913
PctI GAATGC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 1244
PkrI GCNGC 4 cut(s) 709, 1925, 2242, 2245
PleI GAGTC 2 cut(s) 27, 48
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
PpsI GAGTC 2 cut(s) 27, 48
Ppu21I YACGTR 2 cut(s) 40, 657
PshBI ATTAAT 1 cut(s) 1515
PsiI TTATAA 3 cut(s) 1293, 2333, 2556
Psp6I CCWGG 1 cut(s) 1683
PspCI CACGTG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 2246
PspGI CCWGG 1 cut(s) 1683
PspN4I GGNNCC 4 cut(s) 537, 951, 1380, 1822
PspPI GGNCC 1 cut(s) 270
PsrI GAACNNNNNNTAC 2 cut(s) 2446, 2478
PstI CTGCAG 1 cut(s) 2453
PsuI RGATCY 4 cut(s) 111, 1154, 1432, 1557
RsaI GTAC 9 cut(s) 80, 140, 871, 1628, 1712, 1939, 1995, 2221, 2640
RsaNI GTAC 9 cut(s) 79, 139, 870, 1627, 1711, 1938, 1994, 2220, 2639
SaqAI TTAA 9 cut(s) 150, 849, 1061, 1166, 1358, 1515, 1665, 2478, 2484
SatI GCNGC 4 cut(s) 708, 1924, 2241, 2244
Sau96I GGNCC 1 cut(s) 270
ScaI AGTACT 1 cut(s) 1939
SchI GAGTC 2 cut(s) 27, 48
ScrFI CCNGG 3 cut(s) 70, 71, 1685
SduI GDGCHC 2 cut(s) 319, 1825
SfaNI GCATC 6 cut(s) 1012, 1245, 1327, 1770, 1842, 2146
SfcI CTRYAG 2 cut(s) 1210, 2449
SmaI CCCGGG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 461, 1304
SmoI CTYRAG 2 cut(s) 461, 1304
SsiI CCGC 8 cut(s) 25, 118, 528, 707, 710, 917, 933, 1550
SspI AATATT 1 cut(s) 1692
SspMI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
StyD4I CCNGG 3 cut(s) 68, 69, 1683
TaiI ACGT 2 cut(s) 42, 659
TaqI TCGA 9 cut(s) 105, 251, 319, 450, 662, 1248, 1563, 1700, 2365
TatI WGTACW 6 cut(s) 78, 869, 1710, 1937, 1993, 2638
TauI GCSGC 1 cut(s) 710
Tru1I TTAA 9 cut(s) 150, 849, 1061, 1166, 1358, 1515, 1665, 2478, 2484
Tru9I TTAA 9 cut(s) 150, 849, 1061, 1166, 1358, 1515, 1665, 2478, 2484
TscAI CASTG 6 cut(s) 65, 604, 879, 960, 1732, 2242
TseFI GTSAC 2 cut(s) 593, 757
TseI GCWGC 3 cut(s) 1923, 2240, 2243
Tsp45I GTSAC 2 cut(s) 593, 757
TspMI CCCGGG 1 cut(s) 69
TspRI CASTG 6 cut(s) 65, 604, 879, 960, 1732, 2242
VspI ATTAAT 1 cut(s) 1515
XagI CCTNNNNNAGG 1 cut(s) 1263
XapI RAATTY 5 cut(s) 167, 263, 1928, 2043, 2480
XbaI TCTAGA 2 cut(s) 1742, 2500
XceI RCATGY 1 cut(s) 506
XmaI CCCGGG 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 1244
XspI CTAG 5 cut(s) 1026, 1580, 1743, 2501, 2627
ZrmI AGTACT 1 cut(s) 1939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.