RLG00000011344

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010830
Physical Location & Seq
Reverse (-)
8766608 .. 8770233
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011344

Sequence Viewer

Length: 2907 bp
ATGATATTTCGCAGCTATGATTCAACTCCGGCGGCACAGACTCTCCTTTCTCGGAACCAAATGCTCAGGCGCTACTGCTTCCACCGCCGACCACTCCACGCGTCCCGAACCGGATTCCACTGGAAGCCCCGGGACGAGTACAAGCTGACCCGACCCGAATTGCTCGACCGGATCTCCCGCCTCCTCGTCCTCCAACGGTACGACGCCCTTAACAACCTCTCTTTTGAATTCTCCGACCAACTCCTCAACACCGTTCTCCGGAAACTGAAGCTAAACCCTAACGCCTGCTTAGAGTTTTTCAAATTGGCCTCGAAGCAACAGAAATTCAGGCCCAATCTCAAGTCCTACTGTATAATTGTTCATATTTTGTCCCGTGCTCGAATGTACGATCAAACCAGAGCCTATTTGAATGAATTGGTTGCTCTCTGTAAGAGTAATTATCCGGCTTTCGTGGTCTGGAATGAGCTTGTTAGGGTTTATAGGGAGTTTACATTTTCTCCCTCGGTTTTCGATATGATTCTCAAGGTGTTTGCTGAACAAGGCATGACAAAGTATGCATTACATGTGTTTGATAATATGGGAAAGTGCGGTAGGGTGCCGAGTTTGAGGTCTTGTAATTCTTTGTTGAGTAATTTAGTCAGGAGTGGTGAATGTCACACTGCATTGCTTGTTTATGAGCAGATAGTTAGGTTGGGGATTGTCCCGGATGTTTATACGTGTTCGATAGTGGTGAGAGCATATTGTAAAGAGGGGAGAGTGAGCAGAGCGGCGGAGTTTGTGAAAGAAATAGACAGTTCAGGGTTTGAGTTAAATGTAGTGACTTACAATAGTTTGATTGATGGGTATGCCGGTTTGGGAGAGGTTGAAGGAGCGAAATCGGTGTTGAGGTTGATGTCTGAAAGGGGAATTAAGAGAAATGTGGTGAGTTGTACACTGTTGATGAAGGCTTACTGCAAGCTAGGTAAGATGGAGGAAGCGGAGGAGGTGCTTCGCGGTATAAAGGAGGACGAGCCAGTGGTTGTGGATGAGCGTGCGTATGGTGTGTTGGTAGATGGATATTGTAAAGCTGGCAGAATGGATGATGCTAGTAGGATTCATGATGAGTTGTTGAGGATTGGTTTAAAAATGAATACTATCATATGCAACTCCTTGATCAACGGGTATTGTAAGCTTTATCAAGTTCGGGAAGCAGAGGGAGTATTGAAGCATATGAGATCTTGGAACTTAAAGCCAGATTCTTATAGTTACAATACCCTGATGGATGGTTACTGTAGGAAAGGTCAGATGAGTGAAGCATTGAAGCTTTTCGATGAGATGCCTGAGGGAGGAATCCATCAAACTGTGGTGACTTATAATACCCTTCTCAAGGGTTTATGTCAAGCAAATGCTTTTGATGATGCTTTACACCTTTGGCATTTAATGTTGAAAAGAGGATTGGCTCCTGATGAGGTTAGCTACTGTTCTCTGCTTGATGGGTTTTTCAAGAAGGAAGATCTTGACGGTGCTATAACTCTGTGGAAAGATATTTTGGCAAAGGGTTTTACGAAAAGCCGGTTTGCTTTCAATACAATGATTAATGGGTTATGCAAGATGGGGAAATTGGTTGAAGCGGAGGAGATCTTCGATAAGATGAAGGAGCTAGGATATTTGCCTGATGAGATAACTTATAGAACCCTGAGTGATGGGTACTGCAAAGTTGGGAATGTTGAAGAAGCTTTCAGAGTTAAAACTTTGATGGAAGGCCAGGCAATATTTCCTTCAATTGAAATGTACAATTCTCTCATCAGTGGTGTTTTTATGTCTAGAAATATAAGTAAAGTGATGAATCTTCTTGCTGAGATGCAGACAAGGGGACTATCCCCTAATACTGTAACATATGGAGCCCTTATCTCTGGTTGGTGCAATGAAGGGATGCTGGATAAAGCTTTTAGTTCATATTTTGAGATGATTGACAAAGGGTGTGACACCAATTTGTTTATTTGCAGCAAATTTATCAGTACTCTGTATAGGCTTGGAAGGATTGATGAAGCAAGTATTCTGTTGCAGAAGTTAGTACATTATGATCCCTTTCCAGTTCAAAAAGGTGATATTACACAATGCGAAATTCAAAAGTTTGCAGATTCTCTTGATGAAAGTGCTAAACGTGTCTGTCTTCCCAACAATGTCTTATACAACATTGCTATCTTTGGAATCTGCAAATCGGGGAAGGTTGGTGATGCAAGAAAATTTTTATCGGCTTTGTTGCTTAGTGGCTTTTCTCCAGACAATTTCACATATTGTACCCTGATTCATGCCACTGCTGCTGCTGGTAATGTGAACGAGGCTTTCAGCTTACGAGATGAAATGCTGAGAAGGAATCTTGTTCCTAACATTACAACATATAATGCTCTTATAAATGGCTTGTGCAAAGCAGGAGAATTGGATCGAGCGCAGAGGCTTTTCTATAAACTTTGCGAGAAGGGGTTAGCTCCTAATGCTGTTACCTATAATATATTGATTGATGGATACTGCAGAACTGGCAATACTGTTGAAGCTTTGAAATTTAAAGACGAGATGATTCTAGAAGGGATTGTTCCCTCTATAATCACTTATTCTGCATTGATCAATGGTCTTTATAAGCAAGGAAATATGGAAGAATCTGTGAAGCTTTTGAGCCAAATGATCAAGGCTGGAGTGCAACAAAACCTAGTCAGTTATCCTGTTTGCGTTTTCAATATAATTCCTGACCAAGTGGTCCAGACCACGATATGGGTAGGCTCTGCAAGAGTTTTTGACAGTTTTAGCTGCAAAGTAGTGCAAGAGCATTGTCATAGGAATACCAGAAGGTCTGAATGTGGAATCTCCTCCTCAGTACAGAAATGCATATCAACCTATCCCAAGGAAAAGATCAGCAAAGAGTGTCCTTGA

Protein Analysis

969

Amino Acids

109.65

Weight (kDa)

8.6

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 201 - 249 4e-08 PPR repeat family
PPR_3 PF13812 225 - 282 8.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 232 - 262 4.1e-06 PPR repeat
PPR_2 PF13041 243 - 283 3.8e-08 PPR repeat family
TPR_24 PF23276 243 - 367 1e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 267 - 298 2.4e-06 PPR repeat
PPR_2 PF13041 271 - 319 6.4e-12 PPR repeat family
PPR PF01535 273 - 303 7.8e-07 PPR repeat
PPR_1 PF12854 341 - 368 3.8e-06 PPR repeat
PPR_2 PF13041 377 - 424 4.3e-15 PPR repeat family
PPR_3 PF13812 400 - 456 6.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 408 - 439 2.1e-13 PPR repeat
PPR PF01535 414 - 444 9.2e-11 PPR repeat
PPR_2 PF13041 414 - 459 1e-17 PPR repeat family
PPR_long PF17177 424 - 559 1e-05 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 443 - 474 3.3e-07 PPR repeat
PPR_2 PF13041 447 - 495 1.9e-15 PPR repeat family
PPR PF01535 449 - 479 4.6e-06 PPR repeat
PPR_long PF17177 495 - 643 5.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 517 - 545 1.2e-09 PPR repeat
PPR_2 PF13041 519 - 565 2.3e-15 PPR repeat family
PPR PF01535 520 - 548 1.4e-09 PPR repeat
TPR_24 PF23276 537 - 647 4e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 540 - 596 3.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 548 - 580 3e-09 PPR repeat
PPR_3 PF13812 575 - 631 9.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 586 - 635 4.4e-11 PPR repeat family
PPR_1 PF12854 617 - 643 4.8e-09 PPR repeat
PPR_2 PF13041 621 - 658 1.6e-07 PPR repeat family
PPR PF01535 624 - 654 3e-06 PPR repeat
PPR_2 PF13041 719 - 765 2.7e-09 PPR repeat family
PPR_long PF17177 739 - 841 6.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 751 - 799 2.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 751 - 782 1.5e-07 PPR repeat
PPR_2 PF13041 761 - 803 3.5e-12 PPR repeat family
PPR_3 PF13812 778 - 836 1.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 785 - 814 1.4e-11 PPR repeat
PPR_2 PF13041 789 - 838 4.9e-18 PPR repeat family
PPR PF01535 793 - 822 2.9e-07 PPR repeat
PPR_1 PF12854 820 - 852 9.4e-13 PPR repeat
PPR_2 PF13041 824 - 873 6.6e-16 PPR repeat family
PPR PF01535 827 - 857 6e-08 PPR repeat
PPR_1 PF12854 856 - 887 4e-07 PPR repeat
PPR_2 PF13041 859 - 899 3.2e-08 PPR repeat family
PPR PF01535 862 - 892 2.1e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19290 AT1G19290
fragaria_vesca FvH4_2g40380 FvH4_2g40380
malus_domestica MD15G1444300.v1.1
prunus_persica Prupe.1G585600_v2.0.a1
pyrus_communis pycom15g39140
rosa_chinensis RchiOBHm_Chr3g0486911 RchiOBHm_Chr6g0300361
rosa_laevigata RLG00000011344
rosa_multiflora Rmu_sc0001670.1_g000017
rosa_roxburghii Rroxscaffold_2G00128300 Rroxscaffold_7G00167860
rosa_rugosa Rorug06G0295300
rosa_samantha Rh3AG278100 Rh6AG408100 Rh6BG415400 Rh6CG422800 Rh6DG408400
rosa_wichuraiana Rw6G035690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1353, 2393, 2616
AasI GACNNNNNNGTC 1 cut(s) 2732
AccB1I GGYRCC 1 cut(s) 595
AccB7I CCANNNNNTGG 1 cut(s) 2748
AccBSI CCGCTC 1 cut(s) 767
AccII CGCG 2 cut(s) 101, 993
AccIII TCCGGA 1 cut(s) 258
AciI CCGC 9 cut(s) 32, 85, 178, 588, 767, 770, 977, 993, 1610
AclWI GGATC 3 cut(s) 179, 2057, 2430
AcsI RAATTY 6 cut(s) 227, 323, 1988, 2103, 2225, 2540
AcuI CTGAAG 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 204
AfiI CCNNNNNNNGG 4 cut(s) 258, 1325, 1366, 2748
AflIII ACRYGT 4 cut(s) 99, 562, 716, 2143
AjnI CCWGG 1 cut(s) 1743
AjuI GAANNNNNNNTTGG 4 cut(s) 1418, 1450, 1511, 1543
Alw21I GWGCWC 1 cut(s) 379
AlwI GGATC 3 cut(s) 179, 2057, 2430
Ama87I CYCGRG 1 cut(s) 129
Aor13HI TCCGGA 1 cut(s) 258
AoxI GGCC 3 cut(s) 306, 329, 1741
ApeKI GCWGC 5 cut(s) 12, 1983, 2300, 2303, 2784
ApoI RAATTY 6 cut(s) 227, 323, 1988, 2103, 2225, 2540
AseI ATTAAT 1 cut(s) 1575
Asp700I GAANNNNTTC 1 cut(s) 1304
AspLEI GCGC 2 cut(s) 72, 2431
AspS9I GGNCC 2 cut(s) 330, 2734
AsuC2I CCSGG 3 cut(s) 130, 131, 704
AsuHPI GGTGA 6 cut(s) 659, 742, 934, 1357, 2096, 2225
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 2734
AxyI CCTNAGG 1 cut(s) 1320
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 1 cut(s) 1885
BbsI GAAGAC 1 cut(s) 2144
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 5 cut(s) 24, 1995, 2287, 2290, 2771
BciT130I CCWGG 1 cut(s) 1745
BciVI GTATCC 1 cut(s) 2498
BclI TGATCA 3 cut(s) 1152, 2601, 2661
BcnI CCSGG 3 cut(s) 130, 131, 704
BfaI CTAG 6 cut(s) 959, 1086, 1640, 1803, 2561, 2687
BfmI CTRYAG 2 cut(s) 1270, 2509
BfoI RGCGCY 1 cut(s) 73
BfuI GTATCC 1 cut(s) 2498
BglII AGATCT 3 cut(s) 1214, 1492, 1617
BisI GCNGC 7 cut(s) 13, 33, 768, 1984, 2301, 2304, 2785
BlsI GCNGC 7 cut(s) 14, 34, 769, 1985, 2302, 2305, 2786
BmcAI AGTACT 1 cut(s) 1999
Bme1390I CCNGG 4 cut(s) 130, 131, 704, 1745
Bme18I GGWCC 1 cut(s) 2734
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 330, 2734
BmiI GGNNCC 4 cut(s) 56, 597, 1440, 1882
BmrFI CCNGG 4 cut(s) 130, 131, 704, 1745
BmsI GCATC 6 cut(s) 1072, 1305, 1387, 1830, 1902, 2206
BpiI GAAGAC 1 cut(s) 2144
BpmI CTGGAG 2 cut(s) 2244, 2691
Bpu10I CCTNAGC 1 cut(s) 65
BpuEI CTTGAG 3 cut(s) 323, 506, 1349
BpuMI CCSGG 3 cut(s) 130, 131, 704
BsaAI YACGTR 1 cut(s) 717
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 128, 129, 501, 2877
BsaWI WCCGGW 3 cut(s) 110, 168, 258
BsaXI ACNNNNNCTCC 6 cut(s) 27, 57, 158, 188, 481, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 1325, 1366, 2748
Bse118I RCCGGY 2 cut(s) 848, 1551
Bse1I ACTGG 4 cut(s) 125, 1013, 2072, 2521
Bse21I CCTNAGG 1 cut(s) 1320
Bse3DI GCAATG 3 cut(s) 662, 1909, 2175
BseAI TCCGGA 1 cut(s) 258
BseBI CCWGG 1 cut(s) 1745
BseDI CCNNGG 4 cut(s) 128, 129, 501, 2877
BseGI GGATG 5 cut(s) 712, 1030, 1084, 1267, 1917
BseLI CCNNNNNNNGG 4 cut(s) 258, 1325, 1366, 2748
BseMI GCAATG 3 cut(s) 662, 1909, 2175
BseMII CTCAG 6 cut(s) 79, 1311, 1667, 1827, 2339, 2862
BseNI ACTGG 4 cut(s) 125, 1013, 2072, 2521
BseRI GAGGAG 6 cut(s) 173, 233, 995, 1628, 2833, 2836
BseXI GCAGC 5 cut(s) 24, 1995, 2287, 2290, 2771
Bsh1236I CGCG 2 cut(s) 101, 993
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 308, 331, 1743
BshNI GGYRCC 1 cut(s) 595
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 9 cut(s) 29, 111, 130, 169, 259, 443, 704, 849, 1552
BslFI GGGAC 5 cut(s) 88, 146, 355, 686, 1866
BslI CCNNNNNNNGG 4 cut(s) 258, 1325, 1366, 2748
BsmFI GGGAC 5 cut(s) 88, 146, 355, 686, 1866
BsnI GGCC 3 cut(s) 308, 331, 1743
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 379, 1885
Bsp13I TCCGGA 1 cut(s) 258
Bsp1407I TGTACA 2 cut(s) 929, 1770
BspACI CCGC 9 cut(s) 32, 85, 178, 588, 767, 770, 977, 993, 1610
BspANI GGCC 3 cut(s) 308, 331, 1743
BspCNI CTCAG 6 cut(s) 78, 1312, 1668, 1828, 2340, 2861
BspEI TCCGGA 1 cut(s) 258
BspFNI CGCG 2 cut(s) 101, 993
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 4 cut(s) 56, 597, 1440, 1882
BspMAI CTGCAG 1 cut(s) 2513
BspPI GGATC 3 cut(s) 179, 2057, 2430
BspT107I GGYRCC 1 cut(s) 595
BsrBI CCGCTC 1 cut(s) 767
BsrDI GCAATG 3 cut(s) 662, 1909, 2175
BsrFI RCCGGY 2 cut(s) 848, 1551
BsrGI TGTACA 2 cut(s) 929, 1770
BsrI ACTGG 4 cut(s) 125, 1013, 2072, 2521
BssAI RCCGGY 2 cut(s) 848, 1551
BssECI CCNNGG 4 cut(s) 128, 129, 501, 2877
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 2877
Bst2UI CCWGG 1 cut(s) 1745
BstACI GRCGYC 1 cut(s) 204
BstAUI TGTACA 2 cut(s) 929, 1770
BstBAI YACGTR 1 cut(s) 717
BstC8I GCNNGC 4 cut(s) 286, 956, 1032, 1069
BstDEI CTNAG 8 cut(s) 65, 289, 1320, 1676, 1836, 2246, 2348, 2848
BstENI CCTNNNNNAGG 2 cut(s) 1323, 1364
BstF5I GGATG 5 cut(s) 712, 1030, 1084, 1267, 1917
BstFNI CGCG 2 cut(s) 101, 993
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 2431
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 4 cut(s) 84, 2300, 2474, 2517
BstNI CCWGG 1 cut(s) 1745
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 4 cut(s) 128, 129, 702, 1743
BstSFI CTRYAG 2 cut(s) 1270, 2509
BstUI CGCG 2 cut(s) 101, 993
BstV1I GCAGC 5 cut(s) 24, 1995, 2287, 2290, 2771
BstV2I GAAGAC 1 cut(s) 2144
BstX2I RGATCY 4 cut(s) 171, 1214, 1492, 1617
BstYI RGATCY 4 cut(s) 171, 1214, 1492, 1617
Bsu36I CCTNAGG 1 cut(s) 1320
BsuI GTATCC 1 cut(s) 2498
BsuRI GGCC 3 cut(s) 308, 331, 1743
BtsCI GGATG 5 cut(s) 712, 1030, 1084, 1267, 1917
BtsI GCAGTG 2 cut(s) 657, 2295
BtsIMutI CAGTG 6 cut(s) 118, 657, 932, 1020, 1792, 2295
Cac8I GCNNGC 4 cut(s) 286, 956, 1032, 1069
CciI TCATGA 1 cut(s) 1096
CfoI GCGC 2 cut(s) 72, 2431
Cfr10I RCCGGY 2 cut(s) 848, 1551
Cfr13I GGNCC 2 cut(s) 330, 2734
Cfr9I CCCGGG 1 cut(s) 129
CseI GACGC 2 cut(s) 90, 212
CviAII CATG 4 cut(s) 544, 563, 1097, 2291
DdeI CTNAG 8 cut(s) 65, 289, 1320, 1676, 1836, 2246, 2348, 2848
DraI TTTAAA 2 cut(s) 1122, 2545
DrdI GACNNNNNNGTC 1 cut(s) 2732
DseDI GACNNNNNNGTC 1 cut(s) 2732
EciI GGCGGA 1 cut(s) 785
Eco130I CCWWGG 1 cut(s) 2877
Eco24I GRGCYC 1 cut(s) 1885
Eco47I GGWCC 1 cut(s) 2734
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 1320
Eco88I CYCGRG 1 cut(s) 129
EcoNI CCTNNNNNAGG 2 cut(s) 1323, 1364
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 1743
EcoT14I CCWWGG 1 cut(s) 2877
EcoT22I ATGCAT 2 cut(s) 559, 2864
EcoT38I GRGCYC 1 cut(s) 1885
ErhI CCWWGG 1 cut(s) 2877
FaeI CATG 4 cut(s) 547, 566, 1100, 2294
FaqI GGGAC 5 cut(s) 88, 146, 355, 686, 1866
FatI CATG 4 cut(s) 543, 562, 1096, 2290
FauI CCCGC 1 cut(s) 185
FauNDI CATATG 3 cut(s) 1139, 1209, 1876
FbaI TGATCA 3 cut(s) 1152, 2601, 2661
Fnu4HI GCNGC 7 cut(s) 13, 33, 768, 1984, 2301, 2304, 2785
FokI GGATG 5 cut(s) 719, 1037, 1091, 1274, 1924
FriOI GRGCYC 1 cut(s) 1885
Fsp4HI GCNGC 7 cut(s) 13, 33, 768, 1984, 2301, 2304, 2785
FspBI CTAG 6 cut(s) 959, 1086, 1640, 1803, 2561, 2687
GlaI GCGC 2 cut(s) 71, 2430
GluI GCNGC 7 cut(s) 13, 33, 768, 1984, 2301, 2304, 2785
GsuI CTGGAG 2 cut(s) 2244, 2691
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 3 cut(s) 308, 331, 1743
HapII CCGG 9 cut(s) 29, 111, 130, 169, 259, 443, 704, 849, 1552
HgaI GACGC 2 cut(s) 90, 212
HhaI GCGC 2 cut(s) 72, 2431
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 4 cut(s) 547, 566, 1100, 2294
Hin6I GCGC 2 cut(s) 70, 2429
HinP1I GCGC 2 cut(s) 70, 2429
HindIII AAGCTT 6 cut(s) 1169, 1301, 1713, 1923, 2532, 2645
HpaII CCGG 9 cut(s) 29, 111, 130, 169, 259, 443, 704, 849, 1552
HphI GGTGA 6 cut(s) 659, 742, 934, 1357, 2096, 2225
Hpy166II GTNNAC 3 cut(s) 489, 932, 2317
Hpy188I TCNGA 6 cut(s) 54, 235, 898, 1284, 1721, 2830
Hpy8I GTNNAC 3 cut(s) 489, 932, 2317
Hpy99I CGWCG 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 716, 2143
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 2300, 2474, 2517
HpyF3I CTNAG 8 cut(s) 65, 289, 1320, 1676, 1836, 2246, 2348, 2848
HpySE526I ACGT 2 cut(s) 716, 2143
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 4 cut(s) 547, 566, 1100, 2294
HspAI GCGC 2 cut(s) 70, 2429
Kpn2I TCCGGA 1 cut(s) 258
Ksp22I TGATCA 3 cut(s) 1152, 2601, 2661
LmnI GCTCC 5 cut(s) 869, 1444, 1636, 1880, 2473
Lsp1109I GCAGC 5 cut(s) 24, 1995, 2287, 2290, 2771
LweI GCATC 6 cut(s) 1072, 1305, 1387, 1830, 1902, 2206
MaeI CTAG 6 cut(s) 959, 1086, 1640, 1803, 2561, 2687
MaeII ACGT 2 cut(s) 716, 2143
MaeIII GTNAC 8 cut(s) 653, 817, 1244, 1265, 1345, 1870, 1961, 2479
MbiI CCGCTC 1 cut(s) 767
MboII GAAGA 6 cut(s) 1502, 1612, 1721, 1820, 2144, 2645
MfeI CAATTG 1 cut(s) 1761
MflI RGATCY 4 cut(s) 171, 1214, 1492, 1617
MhlI GDGCHC 2 cut(s) 379, 1885
MluI ACGCGT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 217, 258
Mph1103I ATGCAT 2 cut(s) 559, 2864
MroI TCCGGA 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 1304
MseI TTAA 9 cut(s) 210, 809, 909, 1121, 1226, 1418, 1575, 1725, 2544
MspI CCGG 9 cut(s) 29, 111, 130, 169, 259, 443, 704, 849, 1552
MspR9I CCNGG 4 cut(s) 130, 131, 704, 1745
MunI CAATTG 1 cut(s) 1761
MvaI CCWGG 1 cut(s) 1745
MvnI CGCG 2 cut(s) 101, 993
MwoI GCNNNNNNNGC 4 cut(s) 84, 2300, 2474, 2517
NciI CCSGG 3 cut(s) 130, 131, 704
NdeI CATATG 3 cut(s) 1139, 1209, 1876
NlaIII CATG 4 cut(s) 547, 566, 1100, 2294
NlaIV GGNNCC 4 cut(s) 56, 597, 1440, 1882
NmeAIII GCCGAG 1 cut(s) 624
NmuCI GTSAC 4 cut(s) 653, 817, 1345, 1961
NsiI ATGCAT 2 cut(s) 559, 2864
NspI RCATGY 1 cut(s) 566
PagI TCATGA 1 cut(s) 1096
PciI ACATGT 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 1304
PflMI CCANNNNNTGG 1 cut(s) 2748
PfoI TCCNGGA 1 cut(s) 702
PkrI GCNGC 7 cut(s) 14, 34, 769, 1985, 2302, 2305, 2786
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 717
PscI ACATGT 1 cut(s) 562
PshBI ATTAAT 1 cut(s) 1575
PsiI TTATAA 3 cut(s) 1353, 2393, 2616
Psp6I CCWGG 1 cut(s) 1743
PspGI CCWGG 1 cut(s) 1743
PspN4I GGNNCC 4 cut(s) 56, 597, 1440, 1882
PspPI GGNCC 2 cut(s) 330, 2734
PsrI GAACNNNNNNTAC 2 cut(s) 2506, 2538
PstI CTGCAG 1 cut(s) 2513
PsuI RGATCY 4 cut(s) 171, 1214, 1492, 1617
SaqAI TTAA 9 cut(s) 210, 809, 909, 1121, 1226, 1418, 1575, 1725, 2544
SatI GCNGC 7 cut(s) 13, 33, 768, 1984, 2301, 2304, 2785
Sau96I GGNCC 2 cut(s) 330, 2734
ScaI AGTACT 1 cut(s) 1999
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 4 cut(s) 130, 131, 704, 1745
SduI GDGCHC 2 cut(s) 379, 1885
SfaNI GCATC 6 cut(s) 1072, 1305, 1387, 1830, 1902, 2206
SfcI CTRYAG 2 cut(s) 1270, 2509
SinI GGWCC 1 cut(s) 2734
SmaI CCCGGG 1 cut(s) 131
SmlI CTYRAG 3 cut(s) 338, 521, 1364
SmoI CTYRAG 3 cut(s) 338, 521, 1364
SsiI CCGC 9 cut(s) 32, 85, 178, 588, 767, 770, 977, 993, 1610
SspI AATATT 1 cut(s) 1752
SspMI CTAG 6 cut(s) 959, 1086, 1640, 1803, 2561, 2687
StyD4I CCNGG 4 cut(s) 128, 129, 702, 1743
StyI CCWWGG 1 cut(s) 2877
TaiI ACGT 2 cut(s) 719, 2146
TaqI TCGA 8 cut(s) 165, 311, 379, 510, 722, 1308, 1623, 2425
TatI WGTACW 6 cut(s) 138, 929, 1770, 1997, 2053, 2851
TauI GCSGC 2 cut(s) 35, 770
Tru1I TTAA 9 cut(s) 210, 809, 909, 1121, 1226, 1418, 1575, 1725, 2544
Tru9I TTAA 9 cut(s) 210, 809, 909, 1121, 1226, 1418, 1575, 1725, 2544
TscAI CASTG 6 cut(s) 125, 664, 939, 1020, 1792, 2302
TseFI GTSAC 4 cut(s) 653, 817, 1345, 1961
TseI GCWGC 5 cut(s) 12, 1983, 2300, 2303, 2784
Tsp45I GTSAC 4 cut(s) 653, 817, 1345, 1961
TspMI CCCGGG 1 cut(s) 129
TspRI CASTG 6 cut(s) 125, 664, 939, 1020, 1792, 2302
Van91I CCANNNNNTGG 1 cut(s) 2748
VpaK11BI GGWCC 1 cut(s) 2734
VspI ATTAAT 1 cut(s) 1575
XagI CCTNNNNNAGG 2 cut(s) 1323, 1364
XapI RAATTY 6 cut(s) 227, 323, 1988, 2103, 2225, 2540
XbaI TCTAGA 2 cut(s) 1802, 2560
XceI RCATGY 1 cut(s) 566
XmaI CCCGGG 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 1304
XspI CTAG 6 cut(s) 959, 1086, 1640, 1803, 2561, 2687
ZrmI AGTACT 1 cut(s) 1999
Zsp2I ATGCAT 2 cut(s) 559, 2864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.