FvH4_2g40801

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018390
Physical Location & Seq
Forward (+)
29001181 .. 29003097
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40801.t1

Sequence Viewer

Length: 1191 bp
ATGGCAGAGGCTGAGGTCTTCGTTGATGATGTTGTCGAAATGATCATACTCAATTTGCCATTGAAATCTGTACTAAAATTTCGATGCGTCTCAAAAAGATGGGACTATAGAATCTCTGACAAAAGATTCTCGCAGAAGCACTATAATATAGCGCGCTGCCGTAAAACTGTGAGTCGGAGGCTGATCATCACATCTTCCTCATCTCGAATGGAATTCTTGGACCTCCAGGCGAAGTCATCGTCATTTAGAAAGCTTACCTGTCCGTTCTTGAAACTAAAGAAACGGCGGTCTCATGATCAAGTAGTCAAGCTACTTGGCTCTAGCAGTGGTTTGGTATGTCTTAGTCTGGATCCTCATAAAAACTTCTACTTATGGAATCCATCAACCAGCTTCTTCAGGAAATTACCCGACCCAGATTTCACTGGTTATTTTTTAGAGGAAGAAGAAGAGGATGTTAACTTGTGTGTTTACCACTACGGTTTTGGTTGTGTGTCGGCTGCTGATGAGAACTATAAACTTTTGATAGGGTTTCGGAACAACTCTGATTTTGAAGAGTTCTTCATATTCTCCTGGAAAGATCAAATTTGGAGAGACATTTCCAATGTCCCACAGTGGATCTGTTTCATAACCCAAGGACAGGGGTCTCTTTCAAATGAAAAACTTCACTGGCCATACGATCACAGAAATTGGCTCTATGGACCTAAGCAGGAAGACTGTATCCTTGCTTTTGATCTGGAAAATGAGAAGTTTGGAAAACTTTCGCTGCCTAAGTTTGATGATGATGGTCATTTAGAGTACGCTAACCTTTTGGGGGTCTCCTGTGAAGGACTGCTGCACTTGGTGCACCATGTGAAGGAATTCTCTGGAATGAAGACCGCCAGTATATGGTTCCTGAAAGAACACGGGGTGACTGCCTCGTGGACTAGGCTCTTTAATCTGAAGACTTCCCCTGAGCCTCTTGAGCCGATCACTTGTCTCGGTCCAATCTTTGTTATTGAGGAAGATCCAGCTTATTATTGGAAGACGTTCACAGAGATTAGGTATCAGAATCAGCCTCAGCCTCACGTATATTTTCTGAAACATAAAAAGCTACTCGACATGATTGTATGTGAAGAGACTTTAGTCCGTCTCGATGATGCTGACGAAGAAGAAGCTAGCTCGGTAGGAAGTGGAGATGAATCAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

397

Amino Acids

46.22

Weight (kDa)

5.68

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 63 - 307 1.7e-07 F-box associated beta propeller domain
FBA_1 PF07734 82 - 335 9.4e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40801
rosa_chinensis RchiOBHm_Chr6g0299781
rosa_laevigata RLG00000011388 RLG00000011389
rosa_multiflora Rmu_ssc0000158.1_g000002 Rmu_ssc0000158.1_g000003
rosa_roxburghii Rroxscaffold_7G00168380
rosa_rugosa Rorug06G0292200
rosa_samantha Rh6CG417800
rosa_wichuraiana Rw6G035290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 885
AccII CGCG 1 cut(s) 154
AciI CCGC 2 cut(s) 286, 876
AclWI GGATC 4 cut(s) 344, 357, 623, 998
AcoI YGGCCR 1 cut(s) 668
AcsI RAATTY 4 cut(s) 77, 212, 582, 857
AcuI CTGAAG 2 cut(s) 379, 959
AdeI CACNNNGTG 3 cut(s) 841, 850, 907
AfaI GTAC 2 cut(s) 72, 797
AfiI CCNNNNNNNGG 4 cut(s) 637, 811, 853, 885
AgsI TTSAA 4 cut(s) 64, 271, 551, 651
AjnI CCWGG 2 cut(s) 225, 569
AluBI AGCT 7 cut(s) 253, 310, 390, 1010, 1090, 1154, 1158
AluI AGCT 7 cut(s) 253, 310, 390, 1010, 1090, 1154, 1158
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 8 cut(s) 94, 294, 585, 648, 820, 980, 1109, 1133
Alw44I GTGCAC 1 cut(s) 842
AlwI GGATC 4 cut(s) 344, 357, 623, 998
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 1 cut(s) 668
ApaLI GTGCAC 1 cut(s) 842
ApeKI GCWGC 4 cut(s) 156, 497, 763, 832
ApoI RAATTY 4 cut(s) 77, 212, 582, 857
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp700I GAANNNNTTC 4 cut(s) 660, 757, 857, 1025
AspLEI GCGC 2 cut(s) 154, 156
AspS9I GGNCC 3 cut(s) 220, 698, 980
AsuHPI GGTGA 1 cut(s) 919
AsuNHI GCTAGC 1 cut(s) 1154
AvaII GGWCC 3 cut(s) 220, 698, 980
BaeGI GKGCMC 1 cut(s) 846
BalI TGGCCA 1 cut(s) 670
BamHI GGATCC 1 cut(s) 349
BauI CACGAG 1 cut(s) 916
BbsI GAAGAC 5 cut(s) 10, 717, 878, 947, 1028
Bbv12I GWGCWC 1 cut(s) 846
BbvCI CCTCAGC 2 cut(s) 12, 1056
BbvI GCAGC 4 cut(s) 143, 484, 750, 819
BccI CCATC 3 cut(s) 93, 388, 776
BceAI ACGGC 2 cut(s) 144, 299
BciT130I CCWGG 2 cut(s) 227, 571
BciVI GTATCC 1 cut(s) 728
BclI TGATCA 3 cut(s) 42, 183, 295
BcoDI GTCTC 8 cut(s) 94, 294, 585, 648, 820, 980, 1109, 1133
BfaI CTAG 3 cut(s) 321, 924, 1155
BfmI CTRYAG 1 cut(s) 106
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 4 cut(s) 157, 498, 764, 833
BlsI GCNGC 4 cut(s) 158, 499, 765, 834
Bme1390I CCNGG 2 cut(s) 227, 571
Bme18I GGWCC 3 cut(s) 220, 698, 980
BmgT120I GGNCC 3 cut(s) 220, 698, 980
BmiI GGNNCC 2 cut(s) 351, 890
BmrFI CCNGG 2 cut(s) 227, 571
BmsI GCATC 2 cut(s) 74, 1126
BmtI GCTAGC 1 cut(s) 1158
BoxI GACNNNNGTC 2 cut(s) 640, 1121
BpiI GAAGAC 5 cut(s) 10, 717, 878, 947, 1028
BpmI CTGGAG 1 cut(s) 209
Bpu10I CCTNAGC 4 cut(s) 12, 702, 951, 1056
BpuEI CTTGAG 1 cut(s) 980
BsaAI YACGTR 1 cut(s) 1066
BsaI GGTCTC 3 cut(s) 294, 648, 820
BsaJI CCNNGG 1 cut(s) 631
Bsc4I CCNNNNNNNGG 4 cut(s) 637, 811, 853, 885
Bse1I ACTGG 3 cut(s) 427, 671, 879
BseBI CCWGG 2 cut(s) 227, 571
BseDI CCNNGG 1 cut(s) 631
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 4 cut(s) 637, 811, 853, 885
BseMII CTCAG 2 cut(s) 942, 1070
BseNI ACTGG 3 cut(s) 427, 671, 879
BsePI GCGCGC 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 846
BseXI GCAGC 4 cut(s) 143, 484, 750, 819
BsgI GTGCAG 1 cut(s) 818
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 846
BslFI GGGAC 2 cut(s) 116, 590
BslI CCNNNNNNNGG 4 cut(s) 637, 811, 853, 885
BsmAI GTCTC 8 cut(s) 94, 294, 585, 648, 820, 980, 1109, 1133
BsmBI CGTCTC 2 cut(s) 94, 1133
BsmFI GGGAC 2 cut(s) 116, 590
BsnI GGCC 1 cut(s) 670
Bso31I GGTCTC 3 cut(s) 294, 648, 820
Bsp1286I GDGCHC 1 cut(s) 846
BspACI CCGC 2 cut(s) 286, 876
BspANI GGCC 1 cut(s) 670
BspCNI CTCAG 3 cut(s) 4, 943, 1069
BspFNI CGCG 1 cut(s) 154
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 351, 890
BspOI GCTAGC 1 cut(s) 1158
BspPI GGATC 4 cut(s) 344, 357, 623, 998
BspTNI GGTCTC 3 cut(s) 294, 648, 820
BsrI ACTGG 3 cut(s) 427, 671, 879
BssECI CCNNGG 1 cut(s) 631
BssHII GCGCGC 1 cut(s) 152
BssSI CACGAG 1 cut(s) 916
BssT1I CCWWGG 1 cut(s) 631
Bst2BI CACGAG 1 cut(s) 916
Bst2UI CCWGG 2 cut(s) 227, 571
Bst4CI ACNGT 4 cut(s) 169, 479, 612, 716
Bst6I CTCTTC 3 cut(s) 441, 546, 1107
BstAPI GCANNNNNTGC 1 cut(s) 841
BstBAI YACGTR 1 cut(s) 1066
BstC8I GCNNGC 2 cut(s) 154, 1156
BstDEI CTNAG 6 cut(s) 12, 341, 702, 768, 951, 1056
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 2 cut(s) 154, 156
BstMAI GTCTC 8 cut(s) 94, 294, 585, 648, 820, 980, 1109, 1133
BstMWI GCNNNNNNNGC 2 cut(s) 841, 961
BstNI CCWGG 2 cut(s) 227, 571
BstPAI GACNNNNGTC 2 cut(s) 640, 1121
BstSCI CCNGG 2 cut(s) 225, 569
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 846
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 143, 484, 750, 819
BstV2I GAAGAC 5 cut(s) 10, 717, 878, 947, 1028
BstX2I RGATCY 3 cut(s) 349, 615, 1003
BstYI RGATCY 3 cut(s) 349, 615, 1003
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 1 cut(s) 670
BtsCI GGATG 1 cut(s) 457
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 4 cut(s) 331, 420, 617, 664
Cac8I GCNNGC 2 cut(s) 154, 1156
CaiI CAGNNNCTG 1 cut(s) 11
CciI TCATGA 1 cut(s) 292
CfoI GCGC 2 cut(s) 154, 156
Cfr13I GGNCC 3 cut(s) 220, 698, 980
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 71, 796
CviAII CATG 3 cut(s) 293, 848, 1099
CviQI GTAC 2 cut(s) 71, 796
DdeI CTNAG 6 cut(s) 12, 341, 702, 768, 951, 1056
DraIII CACNNNGTG 3 cut(s) 841, 850, 907
EaeI YGGCCR 1 cut(s) 668
Eam1104I CTCTTC 3 cut(s) 441, 546, 1107
EarI CTCTTC 3 cut(s) 441, 546, 1107
Eco130I CCWWGG 1 cut(s) 631
Eco31I GGTCTC 3 cut(s) 294, 648, 820
Eco47I GGWCC 3 cut(s) 220, 698, 980
Eco57I CTGAAG 2 cut(s) 379, 959
EcoRI GAATTC 2 cut(s) 212, 857
EcoRII CCWGG 2 cut(s) 225, 569
EcoT14I CCWWGG 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 631
Esp3I CGTCTC 2 cut(s) 94, 1133
FaeI CATG 3 cut(s) 296, 851, 1102
FaqI GGGAC 2 cut(s) 116, 590
FatI CATG 3 cut(s) 292, 847, 1098
FbaI TGATCA 3 cut(s) 42, 183, 295
Fnu4HI GCNGC 4 cut(s) 157, 498, 764, 833
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 4 cut(s) 157, 498, 764, 833
FspBI CTAG 3 cut(s) 321, 924, 1155
GlaI GCGC 2 cut(s) 153, 155
GluI GCNGC 4 cut(s) 157, 498, 764, 833
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 670
HgaI GACGC 1 cut(s) 76
HhaI GCGC 2 cut(s) 154, 156
Hin1II CATG 3 cut(s) 296, 851, 1102
Hin6I GCGC 2 cut(s) 152, 154
HinP1I GCGC 2 cut(s) 152, 154
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 6 cut(s) 111, 126, 172, 376, 1048, 1178
HpaI GTTAAC 1 cut(s) 457
HphI GGTGA 1 cut(s) 919
Hpy166II GTNNAC 5 cut(s) 457, 469, 844, 921, 1029
Hpy188I TCNGA 8 cut(s) 118, 177, 534, 544, 939, 1047, 1077, 1183
Hpy8I GTNNAC 5 cut(s) 457, 469, 844, 921, 1029
HpyAV CCTTC 2 cut(s) 818, 847
HpyCH4III ACNGT 4 cut(s) 169, 479, 612, 716
HpyCH4IV ACGT 2 cut(s) 1025, 1065
HpyCH4V TGCA 2 cut(s) 835, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 841, 961
HpyF3I CTNAG 6 cut(s) 12, 341, 702, 768, 951, 1056
HpySE526I ACGT 2 cut(s) 1025, 1065
Hsp92II CATG 3 cut(s) 296, 851, 1102
HspAI GCGC 2 cut(s) 152, 154
Ksp22I TGATCA 3 cut(s) 42, 183, 295
KspAI GTTAAC 1 cut(s) 457
Lsp1109I GCAGC 4 cut(s) 143, 484, 750, 819
LweI GCATC 2 cut(s) 74, 1126
MaeI CTAG 3 cut(s) 321, 924, 1155
MaeII ACGT 2 cut(s) 1025, 1065
MaeIII GTNAC 1 cut(s) 907
MflI RGATCY 3 cut(s) 349, 615, 1003
MhlI GDGCHC 1 cut(s) 846
MlsI TGGCCA 1 cut(s) 670
MluCI AATT 7 cut(s) 52, 77, 212, 401, 582, 685, 857
MluNI TGGCCA 1 cut(s) 670
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 155
Mox20I TGGCCA 1 cut(s) 670
MroXI GAANNNNTTC 4 cut(s) 660, 757, 857, 1025
MscI TGGCCA 1 cut(s) 670
MseI TTAA 2 cut(s) 456, 933
Msp20I TGGCCA 1 cut(s) 670
MspR9I CCNGG 2 cut(s) 227, 571
MvaI CCWGG 2 cut(s) 227, 571
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 841, 961
NheI GCTAGC 1 cut(s) 1154
NlaIII CATG 3 cut(s) 296, 851, 1102
NlaIV GGNNCC 2 cut(s) 351, 890
NmuCI GTSAC 1 cut(s) 907
PagI TCATGA 1 cut(s) 292
PauI GCGCGC 1 cut(s) 152
PdmI GAANNNNTTC 4 cut(s) 660, 757, 857, 1025
PfeI GAWTC 5 cut(s) 111, 126, 376, 1048, 1178
PflMI CCANNNNNTGG 1 cut(s) 885
PfoI TCCNGGA 1 cut(s) 569
PkrI GCNGC 4 cut(s) 158, 499, 765, 834
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Ppu21I YACGTR 1 cut(s) 1066
PshAI GACNNNNGTC 2 cut(s) 640, 1121
Psp6I CCWGG 2 cut(s) 225, 569
PspGI CCWGG 2 cut(s) 225, 569
PspN4I GGNNCC 2 cut(s) 351, 890
PspPI GGNCC 3 cut(s) 220, 698, 980
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 3 cut(s) 349, 615, 1003
PteI GCGCGC 1 cut(s) 152
RsaI GTAC 2 cut(s) 72, 797
RsaNI GTAC 2 cut(s) 71, 796
SaqAI TTAA 2 cut(s) 456, 933
SatI GCNGC 4 cut(s) 157, 498, 764, 833
Sau96I GGNCC 3 cut(s) 220, 698, 980
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 2 cut(s) 227, 571
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 2 cut(s) 74, 1126
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 3 cut(s) 220, 698, 980
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
Sse9I AATT 7 cut(s) 52, 77, 212, 401, 582, 685, 857
SsiI CCGC 2 cut(s) 286, 876
SspMI CTAG 3 cut(s) 321, 924, 1155
StyD4I CCNGG 2 cut(s) 225, 569
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 4 cut(s) 169, 479, 612, 716
TaiI ACGT 2 cut(s) 1028, 1068
TaqI TCGA 5 cut(s) 36, 82, 205, 1095, 1131
TaqII GACCGA 1 cut(s) 968
TasI AATT 7 cut(s) 52, 77, 212, 401, 582, 685, 857
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 5 cut(s) 111, 126, 376, 1048, 1178
Tru1I TTAA 2 cut(s) 456, 933
Tru9I TTAA 2 cut(s) 456, 933
TscAI CASTG 4 cut(s) 331, 427, 617, 671
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 4 cut(s) 156, 497, 763, 832
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 5 cut(s) 550, 613, 669, 884, 1191
TspGWI ACGGA 2 cut(s) 252, 1115
TspRI CASTG 4 cut(s) 331, 427, 617, 671
Van91I CCANNNNNTGG 1 cut(s) 885
VneI GTGCAC 1 cut(s) 842
VpaK11BI GGWCC 3 cut(s) 220, 698, 980
XapI RAATTY 4 cut(s) 77, 212, 582, 857
XcmI CCANNNNNNNNNTGG 2 cut(s) 479, 1014
XmnI GAANNNNTTC 4 cut(s) 660, 757, 857, 1025
XspI CTAG 3 cut(s) 321, 924, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.