Rroxscaffold_7G00168380

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018390
Physical Location & Seq
Forward (+)
9262664 .. 9263260
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168380.1

Sequence Viewer

Length: 597 bp
ATGAAGAATCAAATTTGGAGAGCCATTTCCGGTGCCCCAAAGTGGGTCAACCACATAACCCAAAGTCAGGGGGCTCTTTCAAATGAAAAACTACACTGGCTCTTTGATCACAATAATGGGTTCTATGAATCACATGAGGAGGAAGATTGTGTCCTTACTTTTGATCTGGAAAATGAGGAGTTTGGAAAACTTTCGCTGCCTGATTTTGATGATAATGATGATCATCTAGAGTATGCTAATCTTTTGGGGGTCTCCTGTGAAGGATGCCTATACGTGTTGCATCATATGGAGGACTGGTTCTCTAGTATGACATCTGCTAGTATTTGGTACATGAAAGAATATGGGGTGACTGACTCGTGGAGTAAGCTCTTTGATTTAAAGATTTCCCATGAGCCTCTTGAGCCGATAACTTGTCTCGGTCCAATCTTTTTCATGGAGAAATCATCAGCCTATGGCTATGGGAACAAGTTCACAGAGACCAAGTATAAGCATCAGCCTCACATAGATTTGCTGAAGCGAGAAAACCTACTTTACATGATTGTATGTGAAGAGACTCTGGTCTGTCTCGATGATGCTGATGAAGAAGAGGGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

198

Amino Acids

23.04

Weight (kDa)

4.55

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 147 8.8e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018390)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40801
rosa_chinensis RchiOBHm_Chr6g0299781
rosa_laevigata RLG00000011388 RLG00000011389
rosa_multiflora Rmu_ssc0000158.1_g000002 Rmu_ssc0000158.1_g000003
rosa_roxburghii Rroxscaffold_7G00168380
rosa_rugosa Rorug06G0292200
rosa_samantha Rh6CG417800
rosa_wichuraiana Rw6G035290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 3 cut(s) 42, 43, 67
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 81
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 2 cut(s) 367, 594
AluI AGCT 2 cut(s) 367, 594
Alw26I GTCTC 5 cut(s) 256, 419, 470, 545, 569
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 12
Asp700I GAANNNNTTC 2 cut(s) 190, 467
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 358
AvaII GGWCC 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 76
BauI CACGAG 1 cut(s) 355
BbvI GCAGC 1 cut(s) 183
BclI TGATCA 2 cut(s) 106, 220
BcoDI GTCTC 5 cut(s) 256, 419, 470, 545, 569
BfaI CTAG 3 cut(s) 227, 303, 318
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 4 cut(s) 254, 289, 499, 562
BoxI GACNNNNGTC 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 222
BsaI GGTCTC 2 cut(s) 256, 470
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 43, 67
Bse1I ACTGG 2 cut(s) 101, 299
Bse8I GATNNNNATC 1 cut(s) 222
BseGI GGATG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 42, 43, 67
BseNI ACTGG 2 cut(s) 101, 299
BseRI GAGGAG 2 cut(s) 152, 191
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 42, 43, 67
BsmAI GTCTC 5 cut(s) 256, 419, 470, 545, 569
Bso31I GGTCTC 2 cut(s) 256, 470
Bsp1286I GDGCHC 2 cut(s) 37, 76
Bsp143I GATC 3 cut(s) 106, 163, 220
BspLI GGNNCC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 2 cut(s) 256, 470
BsrI ACTGG 2 cut(s) 101, 299
BssMI GATC 3 cut(s) 106, 163, 220
BssSI CACGAG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 355
Bst6I CTCTTC 2 cut(s) 543, 579
BstBAI YACGTR 1 cut(s) 274
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 3 cut(s) 109, 166, 223
BstMAI GTCTC 5 cut(s) 256, 419, 470, 545, 569
BstMBI GATC 3 cut(s) 106, 163, 220
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstPAI GACNNNNGTC 1 cut(s) 557
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 328
CviAII CATG 5 cut(s) 134, 331, 389, 433, 535
CviQI GTAC 1 cut(s) 328
DpnI GATC 3 cut(s) 108, 165, 222
DpnII GATC 3 cut(s) 106, 163, 220
DraI TTTAAA 1 cut(s) 378
Eam1104I CTCTTC 2 cut(s) 543, 579
EarI CTCTTC 2 cut(s) 543, 579
Eco24I GRGCYC 1 cut(s) 76
Eco31I GGTCTC 2 cut(s) 256, 470
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 533
EcoT38I GRGCYC 1 cut(s) 76
FaeI CATG 5 cut(s) 137, 334, 392, 436, 538
FatI CATG 5 cut(s) 133, 330, 388, 432, 534
FauNDI CATATG 1 cut(s) 285
FbaI TGATCA 2 cut(s) 106, 220
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 3 cut(s) 227, 303, 318
GluI GCNGC 1 cut(s) 197
HapII CCGG 1 cut(s) 30
Hin1II CATG 5 cut(s) 137, 334, 392, 436, 538
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 4 cut(s) 7, 128, 353, 553
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 2 cut(s) 49, 471
Hpy188III TCNNGA 4 cut(s) 167, 227, 398, 566
Hpy8I GTNNAC 2 cut(s) 49, 471
HpyAV CCTTC 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 5 cut(s) 137, 334, 392, 436, 538
Ksp22I TGATCA 2 cut(s) 106, 220
Kzo9I GATC 3 cut(s) 106, 163, 220
LpnPI CCDG 8 cut(s) 43, 53, 82, 152, 213, 268, 280, 542
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 4 cut(s) 254, 289, 499, 562
MaeI CTAG 3 cut(s) 227, 303, 318
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 108, 165, 222
MboI GATC 3 cut(s) 106, 163, 220
MboII GAAGA 5 cut(s) 16, 155, 560, 593, 596
MhlI GDGCHC 2 cut(s) 37, 76
MluCI AATT 1 cut(s) 12
MlyI GAGTC 2 cut(s) 347, 547
MnlI CCTC 7 cut(s) 130, 133, 169, 283, 405, 507, 580
MroXI GAANNNNTTC 2 cut(s) 190, 467
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 400
NdeI CATATG 1 cut(s) 285
NdeII GATC 3 cut(s) 106, 163, 220
NlaIII CATG 5 cut(s) 137, 334, 392, 436, 538
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 346
PdmI GAANNNNTTC 2 cut(s) 190, 467
PfeI GAWTC 2 cut(s) 7, 128
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 2 cut(s) 347, 547
PpsI GAGTC 2 cut(s) 347, 547
Ppu21I YACGTR 1 cut(s) 274
PshAI GACNNNNGTC 1 cut(s) 557
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 419
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 106, 163, 220
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 2 cut(s) 347, 547
SduI GDGCHC 2 cut(s) 37, 76
SetI ASST 4 cut(s) 276, 369, 528, 596
SfaNI GCATC 4 cut(s) 254, 289, 499, 562
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 1 cut(s) 12
SspMI CTAG 3 cut(s) 227, 303, 318
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 567
TaqII GACCGA 1 cut(s) 407
TasI AATT 1 cut(s) 12
TfiI GAWTC 2 cut(s) 7, 128
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 6 cut(s) 17, 99, 141, 347, 421, 594
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 12
XbaI TCTAGA 1 cut(s) 226
XmnI GAANNNNTTC 2 cut(s) 190, 467
XspI CTAG 3 cut(s) 227, 303, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.