Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000158.1

Orthogroup ID

OG0018390

Physical Location & Seq

Genomic Coordinates Reverse (-)

11113 .. 11568

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000158.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgggctctatgaatcacatgaggaggaagattgtgtccttactttcgctgcctgattttgatgataatgatgatcatctagagtatgctaatcttttgggggtctcctgtgaaggatgcctatacgtgttgcatcatatggaggactggttctctagtatgacatctgctagtatttggtacaggaaagaatatggggtgactgactcatggagtaagctctttgatttaaagatttcccatgagcctcttgagccgataacttgtctcggtccaaactttttcatggagaaatcatcagtctatggctatgggaacaagttcacagagatcaagtatcagcatcagcctcagcctcacatagatttgctgaagcgagaaaacctacttgacatgattgtatgtgaagagactctggtctgtctcgatgatgctgatgaagaagaggttaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

151

Amino Acids

17.59

Weight (kDa)

4.63

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018390)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40801
rosa_chinensis	RchiOBHm_Chr6g0299781
rosa_laevigata	RLG00000011388 RLG00000011389
rosa_multiflora	Rmu_ssc0000158.1_g000002 Rmu_ssc0000158.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168380
rosa_rugosa	Rorug06G0292200
rosa_samantha	Rh6CG417800
rosa_wichuraiana	Rw6G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	126
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	4 cut(s)	109, 272, 404, 428
ApeKI	GCWGC	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	4 cut(s)	109, 272, 404, 428
BfaI	CTAG	3 cut(s)	80, 156, 171
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmsI	GCATC	4 cut(s)	107, 142, 352, 421
BoxI	GACNNNNGTC	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse1I	ACTGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	75
BseGI	GGATG	1 cut(s)	122
BseJI	GATNNNNATC	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	36
BsmAI	GTCTC	4 cut(s)	109, 272, 404, 428
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	73, 330
BspCNI	CTCAG	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	73, 330
Bst6I	CTCTTC	2 cut(s)	402, 438
BstBAI	YACGTR	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	2 cut(s)	76, 333
BstMAI	GTCTC	4 cut(s)	109, 272, 404, 428
BstMBI	GATC	2 cut(s)	73, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstPAI	GACNNNNGTC	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	5 cut(s)	19, 210, 242, 286, 394
CviJI	RGCY	7 cut(s)	6, 220, 247, 256, 309, 349, 355
CviKI_1	RGCY	7 cut(s)	6, 220, 247, 256, 309, 349, 355
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	75, 332
DpnII	GATC	2 cut(s)	73, 330
DraI	TTTAAA	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	402, 438
EarI	CTCTTC	2 cut(s)	402, 438
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	5 cut(s)	22, 213, 245, 289, 397
FatI	CATG	5 cut(s)	18, 209, 241, 285, 393
FauNDI	CATATG	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	3 cut(s)	80, 156, 171
GluI	GCNGC	1 cut(s)	50
Hin1II	CATG	5 cut(s)	22, 213, 245, 289, 397
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	3 cut(s)	13, 206, 412
HpaI	GTTAAC	1 cut(s)	451
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	324, 451
Hpy188III	TCNNGA	3 cut(s)	80, 251, 425
Hpy8I	GTNNAC	2 cut(s)	324, 451
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	22, 213, 245, 289, 397
Ksp22I	TGATCA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	73, 330
LpnPI	CCDG	5 cut(s)	66, 121, 133, 169, 401
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	4 cut(s)	107, 142, 352, 421
MaeI	CTAG	3 cut(s)	80, 156, 171
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	75, 332
MboI	GATC	2 cut(s)	73, 330
MboII	GAAGA	4 cut(s)	40, 419, 452, 455
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	200, 406
MnlI	CCTC	7 cut(s)	15, 18, 136, 258, 360, 366, 439
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	2 cut(s)	230, 450
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeI	CATATG	1 cut(s)	138
NdeII	GATC	2 cut(s)	73, 330
NlaIII	CATG	5 cut(s)	22, 213, 245, 289, 397
NmuCI	GTSAC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	2 cut(s)	200, 406
PpsI	GAGTC	2 cut(s)	200, 406
Ppu21I	YACGTR	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	230, 450
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	73, 330
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	200, 406
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	129, 222, 387, 450
SfaNI	GCATC	4 cut(s)	107, 142, 352, 421
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SspMI	CTAG	3 cut(s)	80, 156, 171
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	426
TaqII	GACCGA	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	230, 450
Tru9I	TTAA	2 cut(s)	230, 450
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	26, 274, 453
VpaK11BI	GGWCC	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	3 cut(s)	80, 156, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.