Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018390

Physical Location & Seq

Genomic Coordinates Forward (+)

9069608 .. 9070290

Gene Structure 683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011388

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAGAGGGTGATGGTGATGACCTCGTAGATGATGATGTAGAAATAATCATGCTTAAGCTCATCATCATCTCCTCATCTCAAATGGAATCCTTGGACCTCCAGGCGAAGTCATCATCAATTAGAAAGCTTACCTGCCCATTCTTGGAGCTCGAGCAATGGCGGTTTCTTCAAGTCACGCTACTGGGCTCCAGTAGTGGGTTTCGGATTAACTCTGATTTCGAGGAGCTCTTAATATTCTCATGGAAGAATCAAATTTGGGGAGCCATTTCCGGTGCCCCAAAGTGGATCAACCGCATAAGCCGAAGTCAGGGGGCTCTTTCAAATGAAAAACTTCACTGGCTCGATCTTCGATCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

4.77

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018390)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40801
rosa_chinensis	RchiOBHm_Chr6g0299781
rosa_laevigata	RLG00000011388 RLG00000011389
rosa_multiflora	Rmu_ssc0000158.1_g000002 Rmu_ssc0000158.1_g000003
rosa_roxburghii	Rroxscaffold_7G00168380
rosa_rugosa	Rorug06G0292200
rosa_samantha	Rh6CG417800
rosa_wichuraiana	Rw6G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	275
AciI	CCGC	2 cut(s)	163, 295
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	255
AfiI	CCNNNNNNNGG	4 cut(s)	145, 198, 285, 310
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	173, 324
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	61, 130, 151, 229
AluI	AGCT	4 cut(s)	61, 130, 151, 229
Alw21I	GWGCWC	2 cut(s)	153, 231
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	2 cut(s)	23, 29
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	4 cut(s)	153, 191, 231, 319
Bbv12I	GWGCWC	2 cut(s)	153, 231
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	3 cut(s)	190, 265, 277
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BpmI	CTGGAG	2 cut(s)	86, 175
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 198, 285, 310
Bse1I	ACTGG	3 cut(s)	189, 192, 344
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	145, 198, 285, 310
BseMI	GCAATG	1 cut(s)	164
BseNI	ACTGG	3 cut(s)	189, 192, 344
BseRI	GAGGAG	2 cut(s)	64, 239
BseSI	GKGCMC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	2 cut(s)	153, 231
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	4 cut(s)	145, 198, 285, 310
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	5 cut(s)	153, 191, 231, 280, 319
Bsp143I	GATC	3 cut(s)	288, 346, 353
BspACI	CCGC	2 cut(s)	163, 295
BspLI	GGNNCC	3 cut(s)	190, 265, 277
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	189, 192, 344
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	3 cut(s)	288, 346, 353
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	56
BstKTI	GATC	3 cut(s)	291, 349, 356
BstMBI	GATC	3 cut(s)	288, 346, 353
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	97
CviAII	CATG	2 cut(s)	52, 243
CviJI	RGCY	9 cut(s)	61, 130, 151, 189, 229, 266, 303, 317, 343
CviKI_1	RGCY	9 cut(s)	61, 130, 151, 189, 229, 266, 303, 317, 343
DpnI	GATC	3 cut(s)	290, 348, 355
DpnII	GATC	3 cut(s)	288, 346, 353
Ecl136II	GAGCTC	2 cut(s)	151, 229
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	4 cut(s)	153, 191, 231, 319
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	2 cut(s)	151, 229
Eco88I	CYCGRG	1 cut(s)	152
EcoICRI	GAGCTC	2 cut(s)	151, 229
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	4 cut(s)	153, 191, 231, 319
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	55, 246
FaiI	YATR	3 cut(s)	53, 244, 299
FatI	CATG	2 cut(s)	51, 242
FriOI	GRGCYC	4 cut(s)	153, 191, 231, 319
GsuI	CTGGAG	2 cut(s)	86, 175
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	2 cut(s)	55, 246
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	89, 250
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	23, 29
Hpy188I	TCNGA	2 cut(s)	207, 217
Hsp92II	CATG	2 cut(s)	55, 246
Kzo9I	GATC	3 cut(s)	288, 346, 353
LmnI	GCTCC	4 cut(s)	148, 194, 226, 263
LpnPI	CCDG	8 cut(s)	89, 116, 148, 170, 205, 286, 296, 325
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	290, 348, 355
MboI	GATC	3 cut(s)	288, 346, 353
MboII	GAAGA	3 cut(s)	161, 259, 341
MhlI	GDGCHC	5 cut(s)	153, 191, 231, 280, 319
MluCI	AATT	2 cut(s)	120, 255
MnlI	CCTC	4 cut(s)	35, 85, 110, 217
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	3 cut(s)	57, 210, 233
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	3 cut(s)	288, 346, 353
NlaIII	CATG	2 cut(s)	55, 246
NlaIV	GGNNCC	3 cut(s)	190, 265, 277
NmuCI	GTSAC	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	89, 250
Psp124BI	GAGCTC	2 cut(s)	153, 231
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	190, 265, 277
PspPI	GGNCC	1 cut(s)	97
PspXI	VCTCGAGB	1 cut(s)	152
SacI	GAGCTC	2 cut(s)	153, 231
SaqAI	TTAA	3 cut(s)	57, 210, 233
Sau3AI	GATC	3 cut(s)	288, 346, 353
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	5 cut(s)	153, 191, 231, 280, 319
SetI	ASST	7 cut(s)	27, 63, 102, 132, 137, 153, 231
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	97
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	56, 152
SmoI	CTYRAG	2 cut(s)	56, 152
Sse9I	AATT	2 cut(s)	120, 255
SsiI	CCGC	2 cut(s)	163, 295
SspI	AATATT	1 cut(s)	237
SstI	GAGCTC	2 cut(s)	153, 231
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	4 cut(s)	153, 222, 345, 352
TasI	AATT	2 cut(s)	120, 255
TfiI	GAWTC	2 cut(s)	89, 250
Tru1I	TTAA	3 cut(s)	57, 210, 233
Tru9I	TTAA	3 cut(s)	57, 210, 233
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	344
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	255
XhoI	CTCGAG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.