Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005615

Physical Location & Seq

Genomic Coordinates Reverse (-)

29243393 .. 29244419

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGCACAGAATCGGCTCCGCGGCAAAGCTGGATCTCTCCGTCGGCAAGCTCCCGCCCTCTCCCTCCCCCGGATCCGCCCTCCGCCGCAGTGTCCAGTCCGGCGGCTCCGCTCAGGGAGTCCCAGATAGGGTAAGAGTGGCCCTCAGACTGAGGCCCAGAAATGCGGAGGAGTCGGCCGCCGACACCGACTTTGCGAACTGTGTGGAGTTGGAGCCGGAGCTCATGAAGAACAATTGTGACACCGATACATATGAGTTTGATGACGTGCTTAGTGAACATGCGTCCCAAAAACGGGTTTGTGAGGCTGTTGCTAAGCCTGTTGTGGAGAGTGTTTTAAATGGTTACAATGGGACCATGATAGCTTATGGTCAGACGGGTACACGGTTAAAACATTTACCCTGGGACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

138

Amino Acids

14.81

Weight (kDa)

5.9

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	45 - 128	1.7e-08	Microtubule binding
Kinesin	PF00225	50 - 128	6.1e-16	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01950 AT1G01950 AT1G01950 AT1G01950
fragaria_vesca	FvH4_2g41300 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050
malus_domestica	MD02G1201700.v1.1
prunus_persica	Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1
pyrus_communis	pycom02g16510
rosa_chinensis	RchiOBHm_Chr1g0350761
rosa_laevigata	RLG00000028455
rosa_multiflora	Rmu_sc0006200.1_g000002 Rmu_sc0008591.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304510
rosa_rugosa	Rorug01G0214000
rosa_samantha	Rh1AG228400 Rh1BG197800 Rh1CG213200 Rh1DG225700
rosa_wichuraiana	Rw1G019780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AccII	CGCG	1 cut(s)	23
AclWI	GGATC	3 cut(s)	42, 69, 82
AcoI	YGGCCR	1 cut(s)	177
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	4 cut(s)	71, 130, 294, 295
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	4 cut(s)	31, 52, 223, 365
AluI	AGCT	4 cut(s)	31, 52, 223, 365
Alw21I	GWGCWC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	42, 69, 82
AoxI	GGCC	3 cut(s)	141, 155, 177
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	142, 156, 354
AsuC2I	CCSGG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	72
BfaI	CTAG	1 cut(s)	412
BisI	GCNGC	4 cut(s)	24, 88, 106, 180
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	4 cut(s)	25, 89, 107, 181
Bme1390I	CCNGG	2 cut(s)	72, 403
Bme18I	GGWCC	1 cut(s)	354
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	3 cut(s)	142, 156, 354
BmiI	GGNNCC	5 cut(s)	19, 76, 109, 216, 355
BmrFI	CCNGG	2 cut(s)	72, 403
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	21, 70, 401, 402
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 130, 294, 295
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	4 cut(s)	21, 70, 401, 402
BseLI	CCNNNNNNNGG	4 cut(s)	71, 130, 294, 295
BseMII	CTCAG	3 cut(s)	128, 143, 160
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	185
BseX3I	CGGCCG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	143, 157, 179
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	72, 102, 218
BslFI	GGGAC	3 cut(s)	107, 271, 367
BslI	CCNNNNNNNGG	4 cut(s)	71, 130, 294, 295
BsmFI	GGGAC	3 cut(s)	107, 271, 367
BsnI	GGCC	3 cut(s)	143, 157, 179
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	34, 74
Bsp1720I	GCTNAGC	1 cut(s)	315
BspANI	GGCC	3 cut(s)	143, 157, 179
BspCNI	CTCAG	3 cut(s)	127, 144, 159
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	5 cut(s)	19, 76, 109, 216, 355
BspPI	GGATC	3 cut(s)	42, 69, 82
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	4 cut(s)	21, 70, 401, 402
BssMI	GATC	2 cut(s)	34, 74
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	203, 387
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	5 cut(s)	114, 146, 152, 272, 315
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	37, 77
BstMBI	GATC	2 cut(s)	34, 74
BstMCI	CGRYCG	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	403
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	70, 401
BstUI	CGCG	1 cut(s)	23
BstX2I	RGATCY	2 cut(s)	34, 74
BstYI	RGATCY	2 cut(s)	34, 74
BstZI	CGGCCG	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	143, 157, 179
BtgI	CCRYGG	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	142, 156, 354
Cfr42I	CCGCGG	1 cut(s)	24
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	3 cut(s)	226, 281, 358
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	5 cut(s)	114, 146, 152, 272, 315
DpnI	GATC	2 cut(s)	36, 76
DpnII	GATC	2 cut(s)	34, 74
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	177
EagI	CGGCCG	1 cut(s)	177
EciI	GGCGGA	2 cut(s)	67, 74
Ecl136II	GAGCTC	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	354
Eco52I	CGGCCG	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	3 cut(s)	229, 284, 361
FaiI	YATR	6 cut(s)	227, 253, 255, 282, 359, 369
FaqI	GGGAC	3 cut(s)	107, 271, 367
FatI	CATG	3 cut(s)	225, 280, 357
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	24, 88, 106, 180
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	24, 88, 106, 180
FspBI	CTAG	1 cut(s)	412
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	24, 88, 106, 180
HaeIII	GGCC	3 cut(s)	143, 157, 179
HapII	CCGG	3 cut(s)	72, 102, 218
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	229, 284, 361
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	12, 120, 173
HpaII	CCGG	3 cut(s)	72, 102, 218
Hpy166II	GTNNAC	2 cut(s)	278, 383
Hpy188I	TCNGA	2 cut(s)	149, 375
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	2 cut(s)	278, 383
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	203, 387
HpyCH4IV	ACGT	1 cut(s)	267
HpyF3I	CTNAG	5 cut(s)	114, 146, 152, 272, 315
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	229, 284, 361
HspAI	GCGC	1 cut(s)	5
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	34, 74
LmnI	GCTCC	5 cut(s)	23, 57, 113, 214, 220
MaeI	CTAG	1 cut(s)	412
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	239, 344
MalI	GATC	2 cut(s)	36, 76
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	2 cut(s)	34, 74
MboII	GAAGA	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	235
MflI	RGATCY	2 cut(s)	34, 74
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	235
MlyI	GAGTC	2 cut(s)	129, 182
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	70, 76, 92, 147, 155, 163, 298
MseI	TTAA	2 cut(s)	338, 389
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	3 cut(s)	72, 102, 218
MspR9I	CCNGG	2 cut(s)	72, 403
MunI	CAATTG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	403
MvnI	CGCG	1 cut(s)	23
NciI	CCSGG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	2 cut(s)	34, 74
NlaIII	CATG	3 cut(s)	229, 284, 361
NlaIV	GGNNCC	5 cut(s)	19, 76, 109, 216, 355
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	284
PagI	TCATGA	1 cut(s)	225
PasI	CCCWGGG	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	4 cut(s)	25, 89, 107, 181
PleI	GAGTC	2 cut(s)	128, 181
PpsI	GAGTC	2 cut(s)	128, 181
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	5 cut(s)	19, 76, 109, 216, 355
PspPI	GGNCC	3 cut(s)	142, 156, 354
PsuI	RGATCY	2 cut(s)	34, 74
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	225
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	338, 389
SatI	GCNGC	4 cut(s)	24, 88, 106, 180
Sau3AI	GATC	2 cut(s)	34, 74
Sau96I	GGNCC	3 cut(s)	142, 156, 354
SchI	GAGTC	2 cut(s)	129, 182
ScrFI	CCNGG	2 cut(s)	72, 403
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	5 cut(s)	33, 54, 225, 270, 367
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	354
Sse9I	AATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	412
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	70, 401
TaaI	ACNGT	2 cut(s)	203, 387
TaiI	ACGT	1 cut(s)	270
TasI	AATT	1 cut(s)	235
TauI	GCSGC	4 cut(s)	26, 90, 108, 182
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	338, 389
Tru9I	TTAA	2 cut(s)	338, 389
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	354
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.