Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005615

Physical Location & Seq

Genomic Coordinates Reverse (-)

30446557 .. 30446967

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0214000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCAGGGCTGTCGTTGACTGATGGGGCACATGGGCCTAGTTCTGATGGGGAAGACCAGCAGGATAGGATGGGAATGGTGGTGTTGACTGAGGTTGGTCAGAATGGTTCTGGAGGGTCGGGGACTGTGGATCCTGTTTCACAAACTCAACCCTCGCTACCTGGGGTTACCATGCATATTTCCTTTATGTTTGTAGGTTTTAACCTATCTGCATTCTTGGAGAACTGGACGAATCAGGCGAGTAAACCTACTTGTTTGGCAAAAGTGGGGAAGGAACTCCCGTTGGTCATTAGACAACCTTCGAGTTTGCTAGGAGGCAATGATAAAGTGGTGGTGGAATCATCTCCTCTTCTCAATCCTACACTAAGAACTAAGCGCAAGGCTGTGGAAGTGTTGGGACGCTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

136

Amino Acids

14.25

Weight (kDa)

6.06

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01950 AT1G01950 AT1G01950 AT1G01950
fragaria_vesca	FvH4_2g41300 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050
malus_domestica	MD02G1201700.v1.1
prunus_persica	Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1
pyrus_communis	pycom02g16510
rosa_chinensis	RchiOBHm_Chr1g0350761
rosa_laevigata	RLG00000028455
rosa_multiflora	Rmu_sc0006200.1_g000002 Rmu_sc0008591.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304510
rosa_rugosa	Rorug01G0214000
rosa_samantha	Rh1AG228400 Rh1BG197800 Rh1CG213200 Rh1DG225700
rosa_wichuraiana	Rw1G019780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	125, 138
AjnI	CCWGG	1 cut(s)	160
AlwI	GGATC	2 cut(s)	125, 138
AoxI	GGCC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	3 cut(s)	17, 41, 64
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	162
BfaI	CTAG	3 cut(s)	39, 311, 409
Bme1390I	CCNGG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	125, 138
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	90, 365, 372
BstEII	GGTNACC	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	75
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	2 cut(s)	32, 172
CviJI	RGCY	4 cut(s)	10, 37, 383, 408
CviKI_1	RGCY	4 cut(s)	10, 37, 383, 408
DdeI	CTNAG	3 cut(s)	90, 365, 372
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	177
FaeI	CATG	2 cut(s)	35, 175
FaiI	YATR	4 cut(s)	33, 173, 177, 188
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	2 cut(s)	31, 171
FokI	GGATG	1 cut(s)	82
FspBI	CTAG	3 cut(s)	39, 311, 409
GlaI	GCGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	35, 175
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	2 cut(s)	18, 87
HindII	GTYRAC	2 cut(s)	18, 87
HinfI	GANTC	2 cut(s)	232, 338
Hpy166II	GTNNAC	3 cut(s)	18, 87, 245
Hpy188I	TCNGA	2 cut(s)	46, 102
Hpy188III	TCNNGA	1 cut(s)	111
Hpy8I	GTNNAC	3 cut(s)	18, 87, 245
HpyAV	CCTTC	2 cut(s)	265, 309
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	175, 212
HpyF3I	CTNAG	3 cut(s)	90, 365, 372
Hsp92II	CATG	2 cut(s)	35, 175
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	8 cut(s)	47, 71, 96, 147, 147, 174, 211, 221
MaeI	CTAG	3 cut(s)	39, 311, 409
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	65, 341
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	85, 107, 163, 308, 357
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	162
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	35, 175
NlaIV	GGNNCC	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PctI	GAATGC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	232, 338
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	96, 163, 199, 207, 250, 301
SspMI	CTAG	3 cut(s)	39, 311, 409
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	232, 338
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
XspI	CTAG	3 cut(s)	39, 311, 409
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.