Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008591.1

Orthogroup ID

OG0005615

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 683

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008591.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggcgtaccgaaacggcgtcgccgccaggggcacggtgaagctggatcgccccgtcagcttcagaacctcgtcgtctttcaagtccaagctccctccctctccatctcccgccgccggatccgctctccgccgcagcagtccggcctcgttcggctccgcttctaacaaagacgatcacggagtgccgggaagagttagagtagctgtaagattgcgacctagaaatgcggaggagtccgcggccgacgcagattttgctgactgtgtggagttgcagccggagcttaagaggttgaaacttcggaagaacaattgggacactgacacctacgagtttgatgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

115

Amino Acids

12.59

Weight (kDa)

9.72

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01950 AT1G01950 AT1G01950 AT1G01950
fragaria_vesca	FvH4_2g41300 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050 FvH4_7g12050
malus_domestica	MD02G1201700.v1.1
prunus_persica	Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1 Prupe.2G147100_v2.0.a1
pyrus_communis	pycom02g16510
rosa_chinensis	RchiOBHm_Chr1g0350761
rosa_laevigata	RLG00000028455
rosa_multiflora	Rmu_sc0006200.1_g000002 Rmu_sc0008591.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304510
rosa_rugosa	Rorug01G0214000
rosa_samantha	Rh1AG228400 Rh1BG197800 Rh1CG213200 Rh1DG225700
rosa_wichuraiana	Rw1G019780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	242
AclWI	GGATC	3 cut(s)	54, 114, 127
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	82, 298
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	5 cut(s)	43, 60, 91, 206, 286
AluI	AGCT	5 cut(s)	43, 60, 91, 206, 286
AlwI	GGATC	3 cut(s)	54, 114, 127
AoxI	GGCC	2 cut(s)	144, 243
ApeKI	GCWGC	2 cut(s)	135, 277
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	147, 289
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	6 cut(s)	24, 114, 133, 136, 243, 278
BlsI	GCNGC	6 cut(s)	25, 115, 134, 137, 244, 279
Bme1390I	CCNGG	2 cut(s)	28, 189
BmiI	GGNNCC	2 cut(s)	121, 157
BmrFI	CCNGG	2 cut(s)	28, 189
BpuMI	CCSGG	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	27, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	27, 240
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	147, 289
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	146, 245
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	117, 143, 188, 281
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	146, 245
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	46, 119, 175
BspANI	GGCC	2 cut(s)	146, 245
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	121, 157
BspPI	GGATC	3 cut(s)	54, 114, 127
BspTI	CTTAAG	1 cut(s)	287
BsrBI	CCGCTC	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	27, 240
BssMI	GATC	3 cut(s)	46, 119, 175
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	37, 266
Bst6I	CTCTTC	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	3 cut(s)	49, 122, 178
BstMBI	GATC	3 cut(s)	46, 119, 175
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 122, 248, 257, 283
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	26, 187
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	147, 289
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	146, 245
BtgI	CCRYGG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	321
Cfr42I	CCGCGG	1 cut(s)	243
CseI	GACGC	2 cut(s)	7, 257
Csp6I	GTAC	1 cut(s)	7
CviJI	RGCY	9 cut(s)	43, 60, 91, 146, 156, 206, 245, 280, 286
CviKI_1	RGCY	9 cut(s)	43, 60, 91, 146, 156, 206, 245, 280, 286
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	3 cut(s)	48, 121, 177
DpnII	GATC	3 cut(s)	46, 119, 175
DraIII	CACNNNGTG	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	26
FaqI	GGGAC	1 cut(s)	332
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	6 cut(s)	24, 114, 133, 136, 243, 278
Fsp4HI	GCNGC	6 cut(s)	24, 114, 133, 136, 243, 278
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	6 cut(s)	24, 114, 133, 136, 243, 278
HaeIII	GGCC	2 cut(s)	146, 245
HapII	CCGG	4 cut(s)	117, 143, 188, 281
HgaI	GACGC	2 cut(s)	7, 257
Hin1I	GRCGYC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	4 cut(s)	117, 143, 188, 281
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	65, 306
Hpy99I	CGWCG	3 cut(s)	23, 76, 251
HpyCH4III	ACNGT	2 cut(s)	37, 266
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 122, 248, 257, 283
Hsp92I	GRCGYC	1 cut(s)	18
KspI	CCGCGG	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	46, 119, 175
LmnI	GCTCC	3 cut(s)	96, 161, 283
LpnPI	CCDG	7 cut(s)	13, 29, 40, 130, 156, 201, 294
Lsp1109I	GCAGC	2 cut(s)	147, 289
MaeI	CTAG	1 cut(s)	222
MalI	GATC	3 cut(s)	48, 121, 177
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	3 cut(s)	46, 119, 175
MboII	GAAGA	2 cut(s)	204, 319
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	6 cut(s)	79, 105, 109, 157, 226, 285
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	4 cut(s)	117, 143, 188, 281
MspR9I	CCNGG	2 cut(s)	28, 189
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	5 cut(s)	57, 122, 248, 257, 283
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	3 cut(s)	46, 119, 175
NlaIV	GGNNCC	2 cut(s)	121, 157
PkrI	GCNGC	6 cut(s)	25, 115, 134, 137, 244, 279
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	121, 157
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacII	CCGCGG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	6 cut(s)	24, 114, 133, 136, 243, 278
Sau3AI	GATC	3 cut(s)	46, 119, 175
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	28, 189
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	9 cut(s)	45, 62, 71, 93, 208, 223, 288, 296, 332
Sfr303I	CCGCGG	1 cut(s)	243
SgrBI	CCGCGG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	26, 187
TaaI	ACNGT	2 cut(s)	37, 266
TasI	AATT	1 cut(s)	313
TauI	GCSGC	4 cut(s)	26, 116, 135, 245
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	135, 277
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	328
Vha464I	CTTAAG	1 cut(s)	287
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.