FvH4_3g00131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017258
Physical Location & Seq
Reverse (-)
82195 .. 83568
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00131.t1

Sequence Viewer

Length: 765 bp
ATGGAGGAGTGTACGTTACATACGTTCTACACCAGCTCCAGATATATTATACCAACTCCTCTCCTCTGCCGCCCGCAGCCACCGCAATACACCTCTCTTACGGTACAGAGTTCTTCCCCCAACACTGCCATCACATCAGGTTTCCTTGTTCTTTATGATATTCACTTCAGTTCAATCTTTGTTTCCGAAGCTCCAAATTTAAAGCAGATCATCAGGAAATCGAAGGCTTCAATCAATATACATAGAAATATGGAGCATGAGCTGCGTGACAACAAGAAAACAATAAGAGAAGGAGGTGAAGACCATATGATTCGTTCAGAGAAGCATGCAAAGACCAATGAAGATTATTTAAATGGTATTTTTGATCTGAAAAATGAGGTCCATGAATATAAGTGCAACCACAGCGGTGACAGCAGCAACAGCAGTAGCATTACTGGTAATAGTTCTTGTAAGACATCATCGTCATCAGATTCCCAAGATTACTGTGACTTGGCATTGGGGGTATTTGATTTCCCATGGCTGAAAGATGGTGTAATCTCGAAATCAGATCAGGAGTACTGGAATTTTGAAGACGTCTTCTCATCACCCCTAGAATATGATCAGATTCACACAACAACCCTAAGTACTACTTCAGCTGGACCTCGTATTGAATTTTCTAATTTCAGCTGGCAATGTTTCTATGATGAGACTGATCCAGATAAACAGGTAGAATATCCAGAAGACAAGCCCAAGCTTGAGGAAGATGTGTGGCGTGCGCCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

29.06

Weight (kDa)

4.96

Isoelectric Point (pI)

57.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017258)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00131
malus_domestica MD10G1341800.v1.1
prunus_persica Prupe.4G001400_v2.0.a1
pyrus_communis pycom10g29110
rosa_chinensis RchiOBHm_Chr5g0000161
rosa_laevigata RLG00000030846
rosa_roxburghii Rroxscaffold_1G00075930
rosa_rugosa Rorug04G0382000
rosa_samantha Rh5AG001100 Rh5BG002500 Rh5CG001300 Rh5DG001200
rosa_wichuraiana Rw5G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
AatII GACGTC 1 cut(s) 576
AciI CCGC 4 cut(s) 70, 74, 83, 405
AclWI GGATC 1 cut(s) 686
AcsI RAATTY 3 cut(s) 196, 562, 650
AcuI CTGAAG 2 cut(s) 151, 615
AcyI GRCGYC 1 cut(s) 573
AfaI GTAC 4 cut(s) 13, 105, 557, 625
AgsI TTSAA 4 cut(s) 174, 231, 569, 650
AleI CACNNNNGTG 1 cut(s) 405
AluBI AGCT 6 cut(s) 36, 191, 262, 635, 666, 733
AluI AGCT 6 cut(s) 36, 191, 262, 635, 666, 733
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 1 cut(s) 686
ApeKI GCWGC 3 cut(s) 76, 262, 414
ApoI RAATTY 3 cut(s) 196, 562, 650
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 2 cut(s) 379, 638
AsuHPI GGTGA 3 cut(s) 308, 419, 576
AvaII GGWCC 2 cut(s) 379, 638
BbsI GAAGAC 4 cut(s) 306, 568, 576, 726
BbvI GCAGC 3 cut(s) 88, 249, 426
BccI CCATC 2 cut(s) 137, 521
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 1 cut(s) 590
BisI GCNGC 4 cut(s) 70, 77, 263, 415
BlsI GCNGC 4 cut(s) 71, 78, 264, 416
BmcAI AGTACT 2 cut(s) 557, 625
Bme18I GGWCC 2 cut(s) 379, 638
BmgT120I GGNCC 2 cut(s) 379, 638
BpiI GAAGAC 4 cut(s) 306, 568, 576, 726
BpmI CTGGAG 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 755
BsaHI GRCGYC 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 515
BsaXI ACNNNNNCTCC 3 cut(s) 20, 29, 50
Bse1I ACTGG 2 cut(s) 439, 563
Bse3DI GCAATG 1 cut(s) 677
BseDI CCNNGG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 677
BseNI ACTGG 2 cut(s) 439, 563
BseRI GAGGAG 3 cut(s) 20, 48, 53
BseXI GCAGC 3 cut(s) 88, 249, 426
BsmAI GTCTC 1 cut(s) 680
Bsp143I GATC 5 cut(s) 207, 364, 547, 598, 691
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 4 cut(s) 70, 74, 83, 405
BspPI GGATC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 677
BsrI ACTGG 2 cut(s) 439, 563
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 5 cut(s) 207, 364, 547, 598, 691
BssNI GRCGYC 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 515
Bst4CI ACNGT 2 cut(s) 103, 485
BstACI GRCGYC 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 262
BstC8I GCNNGC 4 cut(s) 74, 327, 668, 753
BstDEI CTNAG 1 cut(s) 620
BstDSI CCRYGG 1 cut(s) 515
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 5 cut(s) 210, 367, 550, 601, 694
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 5 cut(s) 207, 364, 547, 598, 691
BstMWI GCNNNNNNNGC 5 cut(s) 82, 262, 402, 411, 420
BstNSI RCATGY 1 cut(s) 329
BstV1I GCAGC 3 cut(s) 88, 249, 426
BstV2I GAAGAC 4 cut(s) 306, 568, 576, 726
BtgI CCRYGG 1 cut(s) 515
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 4 cut(s) 74, 327, 668, 753
CfoI GCGC 1 cut(s) 757
Cfr13I GGNCC 2 cut(s) 379, 638
Csp6I GTAC 4 cut(s) 12, 104, 556, 624
CviAII CATG 4 cut(s) 257, 326, 383, 516
CviQI GTAC 4 cut(s) 12, 104, 556, 624
DdeI CTNAG 1 cut(s) 620
DpnI GATC 5 cut(s) 209, 366, 549, 600, 693
DpnII GATC 5 cut(s) 207, 364, 547, 598, 691
DraI TTTAAA 2 cut(s) 201, 351
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 515
Eco47I GGWCC 2 cut(s) 379, 638
Eco57I CTGAAG 2 cut(s) 151, 615
EcoT14I CCWWGG 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 4 cut(s) 260, 329, 386, 519
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FatI CATG 4 cut(s) 256, 325, 382, 515
FauI CCCGC 1 cut(s) 81
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 4 cut(s) 70, 77, 263, 415
Fsp4HI GCNGC 4 cut(s) 70, 77, 263, 415
FspBI CTAG 1 cut(s) 590
GlaI GCGC 1 cut(s) 756
GluI GCNGC 4 cut(s) 70, 77, 263, 415
GsuI CTGGAG 1 cut(s) 22
HhaI GCGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 4 cut(s) 260, 329, 386, 519
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 3 cut(s) 310, 470, 604
HphI GGTGA 3 cut(s) 308, 419, 576
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 6 cut(s) 187, 319, 369, 469, 547, 603
Hpy188III TCNNGA 6 cut(s) 39, 214, 538, 551, 695, 716
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 217, 284
HpyCH4III ACNGT 2 cut(s) 103, 485
HpyCH4IV ACGT 3 cut(s) 14, 23, 573
HpyCH4V TGCA 2 cut(s) 329, 396
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 262, 402, 411, 420
HpyF3I CTNAG 1 cut(s) 620
HpySE526I ACGT 3 cut(s) 14, 23, 573
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 4 cut(s) 260, 329, 386, 519
HspAI GCGC 1 cut(s) 755
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 5 cut(s) 207, 364, 547, 598, 691
LmnI GCTCC 3 cut(s) 41, 196, 253
Lsp1109I GCAGC 3 cut(s) 88, 249, 426
MaeI CTAG 1 cut(s) 590
MaeII ACGT 3 cut(s) 14, 23, 573
MaeIII GTNAC 4 cut(s) 15, 266, 407, 485
MalI GATC 5 cut(s) 209, 366, 549, 600, 693
MboI GATC 5 cut(s) 207, 364, 547, 598, 691
MboII GAAGA 7 cut(s) 105, 311, 353, 568, 581, 731, 752
MluCI AATT 4 cut(s) 196, 562, 650, 658
MnlI CCTC 7 cut(s) 69, 74, 103, 287, 370, 651, 730
MseI TTAA 3 cut(s) 200, 350, 763
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 3 cut(s) 405, 635, 666
MwoI GCNNNNNNNGC 5 cut(s) 82, 262, 402, 411, 420
NcoI CCATGG 1 cut(s) 515
NdeI CATATG 1 cut(s) 306
NdeII GATC 5 cut(s) 207, 364, 547, 598, 691
NlaIII CATG 4 cut(s) 260, 329, 386, 519
NmuCI GTSAC 3 cut(s) 266, 407, 485
NspI RCATGY 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 405
PaeI GCATGC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 3 cut(s) 310, 470, 604
PkrI GCNGC 4 cut(s) 71, 78, 264, 416
PspPI GGNCC 2 cut(s) 379, 638
PvuII CAGCTG 2 cut(s) 635, 666
RsaI GTAC 4 cut(s) 13, 105, 557, 625
RsaNI GTAC 4 cut(s) 12, 104, 556, 624
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 3 cut(s) 200, 350, 763
SatI GCNGC 4 cut(s) 70, 77, 263, 415
Sau3AI GATC 5 cut(s) 207, 364, 547, 598, 691
Sau96I GGNCC 2 cut(s) 379, 638
ScaI AGTACT 2 cut(s) 557, 625
SinI GGWCC 2 cut(s) 379, 638
SmiI ATTTAAAT 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SphI GCATGC 1 cut(s) 329
Sse9I AATT 4 cut(s) 196, 562, 650, 658
SsiI CCGC 4 cut(s) 70, 74, 83, 405
SspMI CTAG 1 cut(s) 590
StyI CCWWGG 1 cut(s) 515
SwaI ATTTAAAT 1 cut(s) 351
TaaI ACNGT 2 cut(s) 103, 485
TaiI ACGT 3 cut(s) 17, 26, 576
TaqI TCGA 2 cut(s) 221, 539
TasI AATT 4 cut(s) 196, 562, 650, 658
TatI WGTACW 2 cut(s) 555, 623
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 3 cut(s) 310, 470, 604
Tru1I TTAA 3 cut(s) 200, 350, 763
Tru9I TTAA 3 cut(s) 200, 350, 763
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 3 cut(s) 266, 407, 485
TseI GCWGC 3 cut(s) 76, 262, 414
Tsp45I GTSAC 3 cut(s) 266, 407, 485
TspDTI ATGAA 2 cut(s) 354, 399
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 379, 638
XapI RAATTY 3 cut(s) 196, 562, 650
XceI RCATGY 1 cut(s) 329
XspI CTAG 1 cut(s) 590
ZraI GACGTC 1 cut(s) 574
ZrmI AGTACT 2 cut(s) 557, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.