Rw5G000150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017258
Physical Location & Seq
Reverse (-)
183077 .. 187169
4093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G000150.1

Sequence Viewer

Length: 840 bp
ATGTGTTCCGAAATGCTTTTAGTTATGAATTTCGAGAATAGGCCATACAACCACAAAAGCTCAAGTGCAAGTTCTTCTGTCGTATTTAAGATCATTATTTATCTGGCCCGTAAAGTTTCAGCCAACCGTGAGCTGCAAGGCAAAAACCTAGGAAGAGCTTTCATAAAGATGACGAGACGTTACATGCGTTCAACATCTCCAGATAATACGAACTCCTCTCCTCTGCCACAGCCACCCCAATCAGCCTCATACAGTTCATCAATCTTTGTTTCTGAAGCTCACAAATTCAAGCAGATCATTAAGAAAGGCTTCCATATATATAGAAATATGGAGCATGAGCTGCGTGACAGCAAGAAAAGAGTAAGAGAAGGAGATGAAGAACATATGATTTGTTCAGAGAAGCATACCAAATTAGATGATGATATAAATGGTATTTTTGACTTGAAAAATGAGGTGCCTGATTACAAGTGCAACCACAGCAGTGGCGGCAGCAGCAACAGTAGCATAACTGTTAACAGTAGTTGTAAGACATCATCATCATCAGATTCCCATGATTACTGTGACTTGGCATTGGGGGTATTTGATTTCCCGTGGCTGAAAGATGGTGTAATCTCAAAATCAGATCAGGAGTACTGGAATTTTGAAGACGTCTTCTCATCACCCCTAGAATATGACCAGATTCACACATCCACCCTAAGTACTATTTCAGCTGGAGCTCGTATTGAATTTTCTAATTTCAGCTGGCAATGTTTCTATGATGAGACTGATCCGGATAAAAAGGCAGAATTTCCAGAAGACAAGCCCAAGCTTGAGGAAGATGTGTGGCGTGCGCCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.9

Weight (kDa)

5.88

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017258)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00131
malus_domestica MD10G1341800.v1.1
prunus_persica Prupe.4G001400_v2.0.a1
pyrus_communis pycom10g29110
rosa_chinensis RchiOBHm_Chr5g0000161
rosa_laevigata RLG00000030846
rosa_roxburghii Rroxscaffold_1G00075930
rosa_rugosa Rorug04G0382000
rosa_samantha Rh5AG001100 Rh5BG002500 Rh5CG001300 Rh5DG001200
rosa_wichuraiana Rw5G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 454
AccIII TCCGGA 1 cut(s) 769
AciI CCGC 1 cut(s) 486
AclWI GGATC 1 cut(s) 761
AcsI RAATTY 5 cut(s) 28, 284, 637, 725, 785
AcuI CTGAAG 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 648
AfaI GTAC 2 cut(s) 632, 700
AgsI TTSAA 5 cut(s) 192, 289, 445, 644, 725
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 9 cut(s) 60, 133, 158, 278, 340, 710, 716, 741, 808
AluI AGCT 9 cut(s) 60, 133, 158, 278, 340, 710, 716, 741, 808
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 2 cut(s) 169, 755
AlwI GGATC 1 cut(s) 761
Aor13HI TCCGGA 1 cut(s) 769
AoxI GGCC 2 cut(s) 41, 105
ApeKI GCWGC 4 cut(s) 133, 340, 489, 492
ApoI RAATTY 5 cut(s) 28, 284, 637, 725, 785
Asp700I GAANNNNTTC 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 148
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 651
AvrII CCTAGG 1 cut(s) 148
BanI GGYRCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 718
BbsI GAAGAC 3 cut(s) 643, 651, 801
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 4 cut(s) 120, 327, 501, 504
BccI CCATC 1 cut(s) 596
BcoDI GTCTC 2 cut(s) 169, 755
BfaI CTAG 2 cut(s) 149, 665
BisI GCNGC 5 cut(s) 134, 341, 487, 490, 493
BlnI CCTAGG 1 cut(s) 148
BlsI GCNGC 5 cut(s) 135, 342, 488, 491, 494
BmcAI AGTACT 2 cut(s) 632, 700
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 456
BpiI GAAGAC 3 cut(s) 643, 651, 801
BpmI CTGGAG 2 cut(s) 183, 732
BpuEI CTTGAG 2 cut(s) 46, 830
BsaHI GRCGYC 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 148, 590
BsaWI WCCGGW 1 cut(s) 769
Bse1I ACTGG 1 cut(s) 638
Bse3DI GCAATG 1 cut(s) 752
BseAI TCCGGA 1 cut(s) 769
BseDI CCNNGG 2 cut(s) 148, 590
BseGI GGATG 1 cut(s) 686
BseMI GCAATG 1 cut(s) 752
BseNI ACTGG 1 cut(s) 638
BseRI GAGGAG 2 cut(s) 205, 210
BseXI GCAGC 4 cut(s) 120, 327, 501, 504
BshFI GGCC 2 cut(s) 43, 107
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 718
BsiSI CCGG 1 cut(s) 770
BsmAI GTCTC 2 cut(s) 169, 755
BsmBI CGTCTC 1 cut(s) 169
BsnI GGCC 2 cut(s) 43, 107
Bsp1286I GDGCHC 1 cut(s) 718
Bsp13I TCCGGA 1 cut(s) 769
Bsp143I GATC 4 cut(s) 90, 294, 622, 766
BspACI CCGC 1 cut(s) 486
BspANI GGCC 2 cut(s) 43, 107
BspEI TCCGGA 1 cut(s) 769
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 1 cut(s) 761
BspQI GCTCTTC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 752
BsrI ACTGG 1 cut(s) 638
BssECI CCNNGG 2 cut(s) 148, 590
BssMI GATC 4 cut(s) 90, 294, 622, 766
BssNI GRCGYC 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 6 cut(s) 128, 254, 500, 511, 518, 560
Bst6I CTCTTC 1 cut(s) 148
BstACI GRCGYC 1 cut(s) 648
BstAPI GCANNNNNTGC 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 743, 828
BstDEI CTNAG 1 cut(s) 695
BstDSI CCRYGG 1 cut(s) 590
BstF5I GGATG 1 cut(s) 686
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 4 cut(s) 93, 297, 625, 769
BstMAI GTCTC 2 cut(s) 169, 755
BstMBI GATC 4 cut(s) 90, 294, 622, 766
BstMWI GCNNNNNNNGC 5 cut(s) 340, 477, 486, 492, 501
BstNSI RCATGY 1 cut(s) 187
BstV1I GCAGC 4 cut(s) 120, 327, 501, 504
BstV2I GAAGAC 3 cut(s) 643, 651, 801
BstXI CCANNNNNNTGG 1 cut(s) 482
BsuRI GGCC 2 cut(s) 43, 107
BtgI CCRYGG 1 cut(s) 590
BtsCI GGATG 1 cut(s) 686
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 743, 828
CfoI GCGC 1 cut(s) 832
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 631, 699
CviAII CATG 3 cut(s) 184, 335, 551
CviQI GTAC 2 cut(s) 631, 699
DdeI CTNAG 1 cut(s) 695
DpnI GATC 4 cut(s) 92, 296, 624, 768
DpnII GATC 4 cut(s) 90, 294, 622, 766
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 718
Eco53kI GAGCTC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 716
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 3 cut(s) 187, 338, 554
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 3 cut(s) 183, 334, 550
FauNDI CATATG 1 cut(s) 384
Fnu4HI GCNGC 5 cut(s) 134, 341, 487, 490, 493
FokI GGATG 1 cut(s) 673
FriOI GRGCYC 1 cut(s) 718
Fsp4HI GCNGC 5 cut(s) 134, 341, 487, 490, 493
FspBI CTAG 2 cut(s) 149, 665
GlaI GCGC 1 cut(s) 831
GluI GCNGC 5 cut(s) 134, 341, 487, 490, 493
GsuI CTGGAG 2 cut(s) 183, 732
HaeIII GGCC 2 cut(s) 43, 107
HapII CCGG 1 cut(s) 770
HhaI GCGC 1 cut(s) 832
Hin1I GRCGYC 1 cut(s) 648
Hin1II CATG 3 cut(s) 187, 338, 554
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 2 cut(s) 545, 679
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 1 cut(s) 770
HphI GGTGA 1 cut(s) 651
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 5 cut(s) 10, 274, 397, 544, 622
Hpy188III TCNNGA 5 cut(s) 34, 200, 626, 770, 791
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 6 cut(s) 128, 254, 500, 511, 518, 560
HpyCH4IV ACGT 2 cut(s) 178, 648
HpyCH4V TGCA 3 cut(s) 68, 136, 471
HpyF10VI GCNNNNNNNGC 5 cut(s) 340, 477, 486, 492, 501
HpyF3I CTNAG 1 cut(s) 695
HpySE526I ACGT 2 cut(s) 178, 648
Hsp92I GRCGYC 1 cut(s) 648
Hsp92II CATG 3 cut(s) 187, 338, 554
HspAI GCGC 1 cut(s) 830
Kpn2I TCCGGA 1 cut(s) 769
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 4 cut(s) 90, 294, 622, 766
LguI GCTCTTC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 331, 713
Lsp1109I GCAGC 4 cut(s) 120, 327, 501, 504
MaeI CTAG 2 cut(s) 149, 665
MaeII ACGT 2 cut(s) 178, 648
MaeIII GTNAC 3 cut(s) 179, 344, 560
MalI GATC 4 cut(s) 92, 296, 624, 768
MboI GATC 4 cut(s) 90, 294, 622, 766
MboII GAAGA 7 cut(s) 66, 165, 389, 643, 656, 806, 827
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 7 cut(s) 28, 284, 410, 637, 725, 733, 785
MnlI CCTC 5 cut(s) 226, 231, 256, 445, 805
MroI TCCGGA 1 cut(s) 769
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 4 cut(s) 87, 300, 513, 838
MslI CAYNNNNRTG 2 cut(s) 167, 480
MspA1I CMGCKG 2 cut(s) 710, 741
MspI CCGG 1 cut(s) 770
MwoI GCNNNNNNNGC 5 cut(s) 340, 477, 486, 492, 501
NdeI CATATG 1 cut(s) 384
NdeII GATC 4 cut(s) 90, 294, 622, 766
NlaIII CATG 3 cut(s) 187, 338, 554
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 2 cut(s) 344, 560
NspI RCATGY 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 545, 679
PkrI GCNGC 5 cut(s) 135, 342, 488, 491, 494
Psp124BI GAGCTC 1 cut(s) 718
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 1 cut(s) 106
PvuII CAGCTG 2 cut(s) 710, 741
RsaI GTAC 2 cut(s) 632, 700
RsaNI GTAC 2 cut(s) 631, 699
RseI CAYNNNNRTG 2 cut(s) 167, 480
SacI GAGCTC 1 cut(s) 718
SapI GCTCTTC 1 cut(s) 148
SaqAI TTAA 4 cut(s) 87, 300, 513, 838
SatI GCNGC 5 cut(s) 134, 341, 487, 490, 493
Sau3AI GATC 4 cut(s) 90, 294, 622, 766
Sau96I GGNCC 1 cut(s) 106
ScaI AGTACT 2 cut(s) 632, 700
SduI GDGCHC 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 167, 480
SmlI CTYRAG 2 cut(s) 61, 809
SmoI CTYRAG 2 cut(s) 61, 809
Sse9I AATT 7 cut(s) 28, 284, 410, 637, 725, 733, 785
SsiI CCGC 1 cut(s) 486
SspMI CTAG 2 cut(s) 149, 665
SstI GAGCTC 1 cut(s) 718
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 6 cut(s) 128, 254, 500, 511, 518, 560
TaiI ACGT 2 cut(s) 181, 651
TaqI TCGA 1 cut(s) 33
TasI AATT 7 cut(s) 28, 284, 410, 637, 725, 733, 785
TatI WGTACW 2 cut(s) 630, 698
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 2 cut(s) 545, 679
Tru1I TTAA 4 cut(s) 87, 300, 513, 838
Tru9I TTAA 4 cut(s) 87, 300, 513, 838
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 2 cut(s) 344, 560
TseI GCWGC 4 cut(s) 133, 340, 489, 492
Tsp45I GTSAC 2 cut(s) 344, 560
TspDTI ATGAA 4 cut(s) 41, 151, 246, 390
TspRI CASTG 1 cut(s) 487
XapI RAATTY 5 cut(s) 28, 284, 637, 725, 785
XceI RCATGY 1 cut(s) 187
XmaJI CCTAGG 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 2 cut(s) 149, 665
ZraI GACGTC 1 cut(s) 649
ZrmI AGTACT 2 cut(s) 632, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.