Rroxscaffold_1G00075930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017258
Physical Location & Seq
Forward (+)
96473198 .. 96477821
4624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075930.1

Sequence Viewer

Length: 615 bp
ATGCAAGTTCTTCTGTCCCATAAAGTTTCAGCCAACCGTGAGCTGCAAGGCAGAAACCTAGGAAGAGCTTTCATAAAGATGACGAGAAATATGGAGCATGATGAGCTGCGTGACAGCAAGAAAAGAGTAAGAGAAGGAGATGAAGAACATATGATTTGTTCAGAGAAGCATGCAAAGACCAAATTAGATGATGACATAAATGGTATTTTTGACTTGAAAAATGAGGTGCCTGAATACAACTGCAACCACAGCGGTGGCGGAAGCAGCAACAGTAGCATAACTGTTAATAGTAGTTGTAAGACATCATCATCATCATCAGATTCCCATGATTACTGTGACTTGGCATTGGGGGTATTTGATTTCCCGTGGCTGAAAGATGGTGTAATCTCGAAATCAGATCAGGAGTACTGGAATTTTGAAGACGTCTTCTCATCACCCCTAGAATATGATCAGATTCACACATCCACCCTAAGTACTATTTCAGCTGGAGCTCGTATTGAATTTTCTAATTTCAGCTGGCAATGTTTCTATGATGAGACTGATCCGGATAAAAAGGTAGAATTTCCAGAGGACAAGCCCAAGATTAAGGAAGATGTGTGGCGTGCGCCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.29

Weight (kDa)

5.01

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017258)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00131
malus_domestica MD10G1341800.v1.1
prunus_persica Prupe.4G001400_v2.0.a1
pyrus_communis pycom10g29110
rosa_chinensis RchiOBHm_Chr5g0000161
rosa_laevigata RLG00000030846
rosa_roxburghii Rroxscaffold_1G00075930
rosa_rugosa Rorug04G0382000
rosa_samantha Rh5AG001100 Rh5BG002500 Rh5CG001300 Rh5DG001200
rosa_wichuraiana Rw5G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 2 cut(s) 252, 258
AclWI GGATC 1 cut(s) 536
AcsI RAATTY 3 cut(s) 412, 500, 560
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 2 cut(s) 407, 475
AgsI TTSAA 3 cut(s) 217, 419, 500
AleI CACNNNNGTG 1 cut(s) 252
AluBI AGCT 6 cut(s) 43, 68, 106, 485, 491, 516
AluI AGCT 6 cut(s) 43, 68, 106, 485, 491, 516
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 1 cut(s) 536
Aor13HI TCCGGA 1 cut(s) 544
ApeKI GCWGC 3 cut(s) 43, 106, 264
ApoI RAATTY 3 cut(s) 412, 500, 560
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 1 cut(s) 607
AsuHPI GGTGA 1 cut(s) 426
AvrII CCTAGG 1 cut(s) 58
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 493
BbsI GAAGAC 2 cut(s) 418, 426
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 3 cut(s) 30, 93, 276
BccI CCATC 1 cut(s) 371
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 2 cut(s) 59, 440
BisI GCNGC 3 cut(s) 44, 107, 265
BlnI CCTAGG 1 cut(s) 58
BlsI GCNGC 3 cut(s) 45, 108, 266
BmcAI AGTACT 2 cut(s) 407, 475
BmiI GGNNCC 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 418, 426
BpmI CTGGAG 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 58, 365
BsaWI WCCGGW 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 1 cut(s) 527
BseAI TCCGGA 1 cut(s) 544
BseDI CCNNGG 2 cut(s) 58, 365
BseGI GGATG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 30, 93, 276
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 1 cut(s) 545
BsmAI GTCTC 1 cut(s) 530
Bsp1286I GDGCHC 1 cut(s) 493
Bsp13I TCCGGA 1 cut(s) 544
Bsp143I GATC 3 cut(s) 397, 448, 541
BspACI CCGC 2 cut(s) 252, 258
BspEI TCCGGA 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 536
BspQI GCTCTTC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 527
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 58, 365
BssMI GATC 3 cut(s) 397, 448, 541
BssNI GRCGYC 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 4 cut(s) 38, 272, 283, 335
Bst6I CTCTTC 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 171, 518, 603
BstDEI CTNAG 1 cut(s) 470
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 461
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 3 cut(s) 400, 451, 544
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 3 cut(s) 397, 448, 541
BstMWI GCNNNNNNNGC 4 cut(s) 103, 249, 264, 273
BstNSI RCATGY 1 cut(s) 173
BstV1I GCAGC 3 cut(s) 30, 93, 276
BstV2I GAAGAC 2 cut(s) 418, 426
BstXI CCANNNNNNTGG 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 461
Cac8I GCNNGC 3 cut(s) 171, 518, 603
CfoI GCGC 1 cut(s) 607
Csp6I GTAC 2 cut(s) 406, 474
CviAII CATG 3 cut(s) 98, 170, 326
CviJI RGCY 9 cut(s) 32, 43, 68, 106, 370, 485, 491, 516, 577
CviKI_1 RGCY 9 cut(s) 32, 43, 68, 106, 370, 485, 491, 516, 577
CviQI GTAC 2 cut(s) 406, 474
DdeI CTNAG 1 cut(s) 470
DpnI GATC 3 cut(s) 399, 450, 543
DpnII GATC 3 cut(s) 397, 448, 541
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 101, 173, 329
FatI CATG 3 cut(s) 97, 169, 325
FauNDI CATATG 1 cut(s) 150
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 44, 107, 265
FokI GGATG 1 cut(s) 448
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 3 cut(s) 44, 107, 265
FspBI CTAG 2 cut(s) 59, 440
GlaI GCGC 1 cut(s) 606
GluI GCNGC 3 cut(s) 44, 107, 265
GsuI CTGGAG 1 cut(s) 507
HapII CCGG 1 cut(s) 545
HhaI GCGC 1 cut(s) 607
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 3 cut(s) 101, 173, 329
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HinfI GANTC 2 cut(s) 320, 454
HpaII CCGG 1 cut(s) 545
HphI GGTGA 1 cut(s) 426
Hpy188I TCNGA 4 cut(s) 163, 319, 397, 453
Hpy188III TCNNGA 4 cut(s) 388, 401, 545, 566
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 4 cut(s) 38, 272, 283, 335
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 4 cut(s) 4, 46, 173, 243
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 249, 264, 273
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 3 cut(s) 101, 173, 329
HspAI GCGC 1 cut(s) 605
Kpn2I TCCGGA 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 3 cut(s) 397, 448, 541
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 94, 488
LpnPI CCDG 7 cut(s) 243, 386, 394, 471, 502, 558, 579
Lsp1109I GCAGC 3 cut(s) 30, 93, 276
MaeI CTAG 2 cut(s) 59, 440
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 110, 335
MalI GATC 3 cut(s) 399, 450, 543
MboI GATC 3 cut(s) 397, 448, 541
MboII GAAGA 5 cut(s) 75, 155, 418, 431, 602
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 5 cut(s) 182, 412, 500, 508, 560
MnlI CCTC 2 cut(s) 217, 562
MroI TCCGGA 1 cut(s) 544
MseI TTAA 3 cut(s) 285, 585, 613
MslI CAYNNNNRTG 2 cut(s) 77, 252
MspA1I CMGCKG 3 cut(s) 252, 485, 516
MspI CCGG 1 cut(s) 545
MwoI GCNNNNNNNGC 4 cut(s) 103, 249, 264, 273
NdeI CATATG 1 cut(s) 150
NdeII GATC 3 cut(s) 397, 448, 541
NlaIII CATG 3 cut(s) 101, 173, 329
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 110, 335
NspI RCATGY 1 cut(s) 173
OliI CACNNNNGTG 1 cut(s) 252
PaeI GCATGC 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 320, 454
PkrI GCNGC 3 cut(s) 45, 108, 266
Psp124BI GAGCTC 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 228
PvuII CAGCTG 2 cut(s) 485, 516
RsaI GTAC 2 cut(s) 407, 475
RsaNI GTAC 2 cut(s) 406, 474
RseI CAYNNNNRTG 2 cut(s) 77, 252
SacI GAGCTC 1 cut(s) 493
SapI GCTCTTC 1 cut(s) 58
SaqAI TTAA 3 cut(s) 285, 585, 613
SatI GCNGC 3 cut(s) 44, 107, 265
Sau3AI GATC 3 cut(s) 397, 448, 541
ScaI AGTACT 2 cut(s) 407, 475
SduI GDGCHC 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 77, 252
SphI GCATGC 1 cut(s) 173
Sse9I AATT 5 cut(s) 182, 412, 500, 508, 560
SsiI CCGC 2 cut(s) 252, 258
SspMI CTAG 2 cut(s) 59, 440
SstI GAGCTC 1 cut(s) 493
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 4 cut(s) 38, 272, 283, 335
TaiI ACGT 1 cut(s) 426
TaqI TCGA 1 cut(s) 389
TasI AATT 5 cut(s) 182, 412, 500, 508, 560
TatI WGTACW 2 cut(s) 405, 473
TfiI GAWTC 2 cut(s) 320, 454
Tru1I TTAA 3 cut(s) 285, 585, 613
Tru9I TTAA 3 cut(s) 285, 585, 613
TseFI GTSAC 2 cut(s) 110, 335
TseI GCWGC 3 cut(s) 43, 106, 264
Tsp45I GTSAC 2 cut(s) 110, 335
TspDTI ATGAA 2 cut(s) 61, 156
XapI RAATTY 3 cut(s) 412, 500, 560
XceI RCATGY 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 58
XspI CTAG 2 cut(s) 59, 440
ZraI GACGTC 1 cut(s) 424
ZrmI AGTACT 2 cut(s) 407, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.