RchiOBHm_Chr5g0000161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017258
Physical Location & Seq
Reverse (-)
141858 .. 142802
945 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28173

Sequence Viewer

Length: 513 bp
ATGGAGCATGAGCTGCGTGACAGCAAGAAAAGAGTAAGAGAAGGAGATGAAGAACATATGATTTGTTCAGAGAAGCATACCAAATTAGATGATGATATAAATGGTATTTTTGACTTGAAAAATGAGGTGCCTGATTACAACTGCAACCACAGCGGTGGTGGCAGCAGCAACAGTAGCATAACTGTTAATAGTAGTTGTAAGACATCATCATCATCAGATTCCCATGATTACTGTGACTTGGCATTGGGGGTATTTGATTTCCCATGGCTGAAAGATGGTGTAATCTCGAAATCAGATCAGGAGTACTGGAATTTTGAAGACGTCTTCTCATCACCCCTAGAATATGATCAGATTCACACATCCACCCTAAGTACTATTTCAGCTGGAGCTCGTATTGAATTTTCTAATTTCAGCTGGCAATGTTTCTATGATGAGACTGATCCGGATAAAAAGGTAGAATTTCCAGAAGATAAGCCCAAGCTTGAGGAAGATGTGTGGCGTGCGCCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.42

Weight (kDa)

4.48

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017258)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00131
malus_domestica MD10G1341800.v1.1
prunus_persica Prupe.4G001400_v2.0.a1
pyrus_communis pycom10g29110
rosa_chinensis RchiOBHm_Chr5g0000161
rosa_laevigata RLG00000030846
rosa_roxburghii Rroxscaffold_1G00075930
rosa_rugosa Rorug04G0382000
rosa_samantha Rh5AG001100 Rh5BG002500 Rh5CG001300 Rh5DG001200
rosa_wichuraiana Rw5G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 127
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 3 cut(s) 310, 398, 458
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 2 cut(s) 305, 373
AgsI TTSAA 3 cut(s) 118, 317, 398
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 5 cut(s) 13, 383, 389, 414, 481
AluI AGCT 5 cut(s) 13, 383, 389, 414, 481
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 1 cut(s) 434
Aor13HI TCCGGA 1 cut(s) 442
ApeKI GCWGC 3 cut(s) 13, 162, 165
ApoI RAATTY 3 cut(s) 310, 398, 458
AspLEI GCGC 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 316, 324
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 174, 177
BccI CCATC 1 cut(s) 269
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 338
BisI GCNGC 3 cut(s) 14, 163, 166
BlsI GCNGC 3 cut(s) 15, 164, 167
BmcAI AGTACT 2 cut(s) 305, 373
BmiI GGNNCC 1 cut(s) 129
BpiI GAAGAC 2 cut(s) 316, 324
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 425
BseAI TCCGGA 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 359
BseMI GCAATG 1 cut(s) 425
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 174, 177
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 391
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 3 cut(s) 295, 346, 439
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 425
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 295, 346, 439
BssNI GRCGYC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 3 cut(s) 173, 184, 233
BstACI GRCGYC 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 416, 501
BstDEI CTNAG 1 cut(s) 368
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 359
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 3 cut(s) 298, 349, 442
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 3 cut(s) 295, 346, 439
BstMWI GCNNNNNNNGC 4 cut(s) 13, 150, 159, 174
BstV1I GCAGC 2 cut(s) 174, 177
BstV2I GAAGAC 2 cut(s) 316, 324
BstXI CCANNNNNNTGG 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 416, 501
CfoI GCGC 1 cut(s) 505
Csp6I GTAC 2 cut(s) 304, 372
CviAII CATG 3 cut(s) 8, 224, 264
CviJI RGCY 7 cut(s) 13, 268, 383, 389, 414, 475, 481
CviKI_1 RGCY 7 cut(s) 13, 268, 383, 389, 414, 475, 481
CviQI GTAC 2 cut(s) 304, 372
DdeI CTNAG 1 cut(s) 368
DpnI GATC 3 cut(s) 297, 348, 441
DpnII GATC 3 cut(s) 295, 346, 439
Ecl136II GAGCTC 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 3 cut(s) 11, 227, 267
FatI CATG 3 cut(s) 7, 223, 263
FauNDI CATATG 1 cut(s) 57
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 3 cut(s) 14, 163, 166
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 3 cut(s) 14, 163, 166
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 504
GluI GCNGC 3 cut(s) 14, 163, 166
GsuI CTGGAG 1 cut(s) 405
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 3 cut(s) 11, 227, 267
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 2 cut(s) 218, 352
HpaII CCGG 1 cut(s) 443
HphI GGTGA 1 cut(s) 324
Hpy188I TCNGA 4 cut(s) 70, 217, 295, 351
Hpy188III TCNNGA 4 cut(s) 286, 299, 443, 464
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 173, 184, 233
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 150, 159, 174
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 3 cut(s) 11, 227, 267
HspAI GCGC 1 cut(s) 503
Kpn2I TCCGGA 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 295, 346, 439
LmnI GCTCC 2 cut(s) 4, 386
LpnPI CCDG 7 cut(s) 144, 284, 292, 369, 400, 456, 477
Lsp1109I GCAGC 2 cut(s) 174, 177
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 17, 233
MalI GATC 3 cut(s) 297, 348, 441
MboI GATC 3 cut(s) 295, 346, 439
MboII GAAGA 5 cut(s) 62, 316, 329, 479, 500
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 5 cut(s) 83, 310, 398, 406, 458
MnlI CCTC 2 cut(s) 118, 478
MroI TCCGGA 1 cut(s) 442
MseI TTAA 2 cut(s) 186, 511
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 3 cut(s) 153, 383, 414
MspI CCGG 1 cut(s) 443
MwoI GCNNNNNNNGC 4 cut(s) 13, 150, 159, 174
NcoI CCATGG 1 cut(s) 263
NdeI CATATG 1 cut(s) 57
NdeII GATC 3 cut(s) 295, 346, 439
NlaIII CATG 3 cut(s) 11, 227, 267
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 17, 233
OliI CACNNNNGTG 1 cut(s) 153
PfeI GAWTC 2 cut(s) 218, 352
PkrI GCNGC 3 cut(s) 15, 164, 167
Psp124BI GAGCTC 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 129
PvuII CAGCTG 2 cut(s) 383, 414
RsaI GTAC 2 cut(s) 305, 373
RsaNI GTAC 2 cut(s) 304, 372
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 391
SaqAI TTAA 2 cut(s) 186, 511
SatI GCNGC 3 cut(s) 14, 163, 166
Sau3AI GATC 3 cut(s) 295, 346, 439
ScaI AGTACT 2 cut(s) 305, 373
SduI GDGCHC 1 cut(s) 391
SetI ASST 8 cut(s) 15, 129, 324, 385, 391, 416, 456, 483
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 5 cut(s) 83, 310, 398, 406, 458
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 338
SstI GAGCTC 1 cut(s) 391
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 3 cut(s) 173, 184, 233
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 287
TasI AATT 5 cut(s) 83, 310, 398, 406, 458
TatI WGTACW 2 cut(s) 303, 371
TfiI GAWTC 2 cut(s) 218, 352
Tru1I TTAA 2 cut(s) 186, 511
Tru9I TTAA 2 cut(s) 186, 511
TseFI GTSAC 2 cut(s) 17, 233
TseI GCWGC 3 cut(s) 13, 162, 165
Tsp45I GTSAC 2 cut(s) 17, 233
TspDTI ATGAA 1 cut(s) 63
XapI RAATTY 3 cut(s) 310, 398, 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XspI CTAG 1 cut(s) 338
ZraI GACGTC 1 cut(s) 322
ZrmI AGTACT 2 cut(s) 305, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.