Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009862

Physical Location & Seq

Genomic Coordinates Reverse (-)

1351967 .. 1355057

Gene Structure 3091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGACTCGGACCCACCATTTCACAAGGTCTACAAGTCCTTATTCGACAACGCCAGCAGCAGCACCACCACTACTACCAACAACAAAAATGACAAGGACAACAGCAAAGACCAAGATGCGATGAAGGCAGTCGTCGAGGAATGCGAGCTCCCTCTGATTGATCTGCGGCGACTAGAGCTTGGGGACTCGGAGGGAGAAGAGTGCAAGTCGGAGATAGCTAGGGCATCGCAGGAGTGGGGATTTTTCCAGGTTATGAACCATGGGATTTCAAGCGAGCTTTTGCAGAAGATGAAGAGTGAGCAAGAGAAGGTGTTCAAGCAATCGTTTGACAAGAAGAGCCAAGAACAGAAGTACTTTAACTTTTCTGCAGGTACTTACCGTTGGGGAAGTCCTACGGCGACAAGCCTGAGACAGTTATCATGGTCTGAAGCTTTTCACATTCCACTCAACAAGGTTTCTGCCACCACGGCTGCTGGTGTCGACGATCTCAGCTCAACGATGGAACAGTTTGCCACAACAGTTTCTAGTCTGGCACTGAAATTAGCTGAGATTTTGGCAAAGAAATTGGGACACAAATCGACATTCTTCCACGAAAACTGTTTGCCGAGCACTTGCTATCTTCGGATGAACAGATATCCACCATGTCCGATCCCTTCAGATGTATTCGGTTTGATGCCGCACACTGACAGTGACTTCCTCACTATATTGCATCAAGACCAGGTTGGGGGACTGCAATTGGTGAAAGATGATCGATGGATCGCAGTCAAGCCTAATCCTGAAGCTCTGATCATCAACATTGGGGATTTATTTCAGGCATGGAGCAACAATGTCTACAAGAGTGTGCAGCATCGAGTTGTAACAAATATGCAAGTTGAACGATTCTCCACTGCATACTTCTTTTGTCCATCTTATGAAACCATGATAGAGAGTTGTTGCGAGCCTTCGGTTTATAGAAAATTCAGCTTTGGGGAGTATCGACATCAAGTTCAAGAGGATGTCAAACAATCGGGTTCTAAAATAGGCCTTCCTAGGTTTCTATTGTGTAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

351

Amino Acids

39.81

Weight (kDa)

5.89

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	50 - 148	2.4e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	205 - 302	2.5e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21200 AT4G21200 AT4G21200
fragaria_vesca	FvH4_3g02670
malus_domestica	MD05G1341000.v1.1 MD10G1314500.v1.1
prunus_persica	Prupe.4G026300_v2.0.a1 Prupe.4G026300_v2.0.a1
pyrus_communis	pycom10g26660
rosa_chinensis	RchiOBHm_Chr5g0003991
rosa_laevigata	RLG00000031195
rosa_multiflora	Rmu_sc0000547.1_g000014
rosa_roxburghii	Rroxscaffold_1G00071690 Rroxscaffold_1G00071970
rosa_rugosa	Rorug04G0408800 Rorug04G0408900
rosa_samantha	Rh5AG036600 Rh5BG035700 Rh5CG039200 Rh5DG035100
rosa_wichuraiana	Rw5G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccI	GTMKAC	3 cut(s)	30, 480, 831
AciI	CCGC	2 cut(s)	166, 677
AclWI	GGATC	2 cut(s)	643, 764
AcsI	RAATTY	1 cut(s)	956
AcuI	CTGAAG	3 cut(s)	447, 639, 798
AfaI	GTAC	2 cut(s)	353, 373
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	270, 316, 875, 989
AjnI	CCWGG	2 cut(s)	246, 717
AluBI	AGCT	9 cut(s)	148, 178, 218, 277, 431, 492, 545, 782, 963
AluI	AGCT	9 cut(s)	148, 178, 218, 277, 431, 492, 545, 782, 963
Alw21I	GWGCWC	2 cut(s)	150, 611
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	2 cut(s)	643, 764
AoxI	GGCC	1 cut(s)	1021
ApeKI	GCWGC	4 cut(s)	57, 60, 470, 844
ApoI	RAATTY	1 cut(s)	956
Asp700I	GAANNNNTTC	2 cut(s)	311, 432
AspA2I	CCTAGG	1 cut(s)	1028
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	751
AvaII	GGWCC	1 cut(s)	10
AvrII	CCTAGG	1 cut(s)	1028
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	150, 611
BbvI	GCAGC	4 cut(s)	69, 72, 457, 856
BccI	CCATC	3 cut(s)	493, 747, 913
BceAI	ACGGC	2 cut(s)	411, 483
BciT130I	CCWGG	2 cut(s)	248, 719
BclI	TGATCA	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	4 cut(s)	173, 219, 525, 1029
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	359
BglI	GCCNNNNNGGC	1 cut(s)	467
BisI	GCNGC	6 cut(s)	58, 61, 167, 471, 677, 845
BlnI	CCTAGG	1 cut(s)	1028
BlsI	GCNGC	6 cut(s)	59, 62, 168, 472, 678, 846
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	248, 719
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	248, 719
BmsI	GCATC	5 cut(s)	106, 233, 663, 718, 856
Bsa29I	ATCGAT	1 cut(s)	751
BsaJI	CCNNGG	3 cut(s)	259, 465, 1028
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
BseBI	CCWGG	2 cut(s)	248, 719
BseCI	ATCGAT	1 cut(s)	751
BseDI	CCNNGG	3 cut(s)	259, 465, 1028
BseGI	GGATG	2 cut(s)	630, 1000
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMII	CTCAG	3 cut(s)	398, 502, 537
BseXI	GCAGC	4 cut(s)	69, 72, 457, 856
BsgI	GTGCAG	1 cut(s)	863
BshFI	GGCC	1 cut(s)	1023
BshVI	ATCGAT	1 cut(s)	751
BsiHKAI	GWGCWC	2 cut(s)	150, 611
BslFI	GGGAC	3 cut(s)	197, 582, 741
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	1 cut(s)	403
BsmFI	GGGAC	3 cut(s)	197, 582, 741
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	1023
Bsp1286I	GDGCHC	2 cut(s)	150, 611
Bsp143I	GATC	6 cut(s)	160, 484, 648, 748, 756, 786
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	2 cut(s)	166, 677
BspANI	GGCC	1 cut(s)	1023
BspCNI	CTCAG	3 cut(s)	399, 501, 538
BspDI	ATCGAT	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	643, 764
BspQI	GCTCTTC	1 cut(s)	329
BssECI	CCNNGG	3 cut(s)	259, 465, 1028
BssMI	GATC	6 cut(s)	160, 484, 648, 748, 756, 786
BssT1I	CCWWGG	2 cut(s)	259, 1028
Bst2UI	CCWGG	2 cut(s)	248, 719
Bst4CI	ACNGT	6 cut(s)	380, 414, 507, 520, 599, 689
Bst6I	CTCTTC	3 cut(s)	192, 287, 329
BstC8I	GCNNGC	4 cut(s)	55, 146, 275, 938
BstDEI	CTNAG	3 cut(s)	407, 488, 546
BstDSI	CCRYGG	2 cut(s)	259, 465
BstF5I	GGATG	2 cut(s)	630, 1000
BstKTI	GATC	6 cut(s)	163, 487, 651, 751, 759, 789
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	6 cut(s)	160, 484, 648, 748, 756, 786
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 175, 467
BstNI	CCWGG	2 cut(s)	248, 719
BstSCI	CCNGG	2 cut(s)	246, 717
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	4 cut(s)	69, 72, 457, 856
Bsu15I	ATCGAT	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	1023
BsuTUI	ATCGAT	1 cut(s)	751
BtgI	CCRYGG	2 cut(s)	259, 465
BtgZI	GCGATG	2 cut(s)	134, 210
BtsCI	GGATG	2 cut(s)	630, 1000
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	4 cut(s)	533, 681, 694, 885
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	4 cut(s)	55, 146, 275, 938
Cfr13I	GGNCC	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	751
CsiI	ACCWGGT	1 cut(s)	717
Csp6I	GTAC	2 cut(s)	352, 372
CviAII	CATG	5 cut(s)	260, 420, 642, 816, 919
CviQI	GTAC	2 cut(s)	352, 372
DdeI	CTNAG	3 cut(s)	407, 488, 546
DpnI	GATC	6 cut(s)	162, 486, 650, 750, 758, 788
DpnII	GATC	6 cut(s)	160, 484, 648, 748, 756, 786
Eam1104I	CTCTTC	3 cut(s)	192, 287, 329
EarI	CTCTTC	3 cut(s)	192, 287, 329
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	259, 1028
Eco147I	AGGCCT	1 cut(s)	1023
Eco24I	GRGCYC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	447, 639, 798
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	246, 717
EcoRV	GATATC	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	259, 1028
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	259, 1028
FaeI	CATG	5 cut(s)	263, 423, 645, 819, 922
FaqI	GGGAC	3 cut(s)	197, 582, 741
FatI	CATG	5 cut(s)	259, 419, 641, 815, 918
FbaI	TGATCA	1 cut(s)	786
FblI	GTMKAC	3 cut(s)	30, 480, 831
Fnu4HI	GCNGC	6 cut(s)	58, 61, 167, 471, 677, 845
FokI	GGATG	2 cut(s)	637, 1007
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	6 cut(s)	58, 61, 167, 471, 677, 845
FspBI	CTAG	4 cut(s)	173, 219, 525, 1029
GluI	GCNGC	6 cut(s)	58, 61, 167, 471, 677, 845
HaeIII	GGCC	1 cut(s)	1023
Hin1II	CATG	5 cut(s)	263, 423, 645, 819, 922
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	3 cut(s)	5, 185, 879
HphI	GGTGA	1 cut(s)	751
Hpy166II	GTNNAC	3 cut(s)	31, 481, 832
Hpy188I	TCNGA	9 cut(s)	10, 156, 190, 211, 427, 624, 648, 658, 786
Hpy188III	TCNNGA	3 cut(s)	713, 776, 989
Hpy8I	GTNNAC	3 cut(s)	31, 481, 832
Hpy99I	CGWCG	2 cut(s)	137, 485
HpyAV	CCTTC	5 cut(s)	118, 301, 663, 951, 1034
HpyCH4III	ACNGT	6 cut(s)	380, 414, 507, 520, 599, 689
HpyCH4V	TGCA	8 cut(s)	204, 283, 368, 709, 733, 844, 868, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 175, 467
HpyF3I	CTNAG	3 cut(s)	407, 488, 546
Hsp92II	CATG	5 cut(s)	263, 423, 645, 819, 922
Ksp22I	TGATCA	1 cut(s)	786
Kzo9I	GATC	6 cut(s)	160, 484, 648, 748, 756, 786
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	153, 819
Lsp1109I	GCAGC	4 cut(s)	69, 72, 457, 856
LweI	GCATC	5 cut(s)	106, 233, 663, 718, 856
MabI	ACCWGGT	1 cut(s)	717
MaeI	CTAG	4 cut(s)	173, 219, 525, 1029
MaeIII	GTNAC	2 cut(s)	689, 856
MalI	GATC	6 cut(s)	162, 486, 650, 750, 758, 788
MboI	GATC	6 cut(s)	160, 484, 648, 748, 756, 786
MboII	GAAGA	6 cut(s)	209, 298, 304, 346, 577, 611
MfeI	CAATTG	1 cut(s)	734
MhlI	GDGCHC	2 cut(s)	150, 611
MluCI	AATT	5 cut(s)	539, 563, 734, 956, 1045
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	130, 162, 184, 707, 985
MroXI	GAANNNNTTC	2 cut(s)	311, 432
MseI	TTAA	1 cut(s)	357
MspR9I	CCNGG	2 cut(s)	248, 719
MunI	CAATTG	1 cut(s)	734
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	248, 719
MwoI	GCNNNNNNNGC	3 cut(s)	125, 175, 467
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	6 cut(s)	160, 484, 648, 748, 756, 786
NlaIII	CATG	5 cut(s)	263, 423, 645, 819, 922
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	630
NmuCI	GTSAC	1 cut(s)	689
PceI	AGGCCT	1 cut(s)	1023
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	146
PdmI	GAANNNNTTC	2 cut(s)	311, 432
PfeI	GAWTC	1 cut(s)	879
PkrI	GCNGC	6 cut(s)	59, 62, 168, 472, 678, 846
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	246, 717
PspGI	CCWGG	2 cut(s)	246, 717
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	2 cut(s)	353, 373
RsaNI	GTAC	2 cut(s)	352, 372
SacI	GAGCTC	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	479
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	6 cut(s)	58, 61, 167, 471, 677, 845
Sau3AI	GATC	6 cut(s)	160, 484, 648, 748, 756, 786
Sau96I	GGNCC	1 cut(s)	10
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	248, 719
SduI	GDGCHC	2 cut(s)	150, 611
SexAI	ACCWGGT	1 cut(s)	717
SfaNI	GCATC	5 cut(s)	106, 233, 663, 718, 856
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	5 cut(s)	539, 563, 734, 956, 1045
SseBI	AGGCCT	1 cut(s)	1023
SsiI	CCGC	2 cut(s)	166, 677
SspMI	CTAG	4 cut(s)	173, 219, 525, 1029
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	1023
StyD4I	CCNGG	2 cut(s)	246, 717
StyI	CCWWGG	2 cut(s)	259, 1028
TaaI	ACNGT	6 cut(s)	380, 414, 507, 520, 599, 689
TaqI	TCGA	7 cut(s)	45, 135, 480, 578, 751, 850, 976
TasI	AATT	5 cut(s)	539, 563, 734, 956, 1045
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	2 cut(s)	169, 679
TfiI	GAWTC	1 cut(s)	879
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	4 cut(s)	540, 688, 694, 892
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	4 cut(s)	57, 60, 470, 844
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	5 cut(s)	137, 269, 305, 641, 927
TspRI	CASTG	4 cut(s)	540, 688, 694, 892
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	956
XmaJI	CCTAGG	1 cut(s)	1028
XmiI	GTMKAC	3 cut(s)	30, 480, 831
XmnI	GAANNNNTTC	2 cut(s)	311, 432
XspI	CTAG	4 cut(s)	173, 219, 525, 1029
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.