Rh5DG035100

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
2468767 .. 2474149
5383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG035100.1

Sequence Viewer

Length: 1350 bp
ATGGACAGCGACGGTGAAGGCGCAGCAGTAGCAGGAGACGACGTCGGTGATGGTGACGACAACGTATCGGATTCTGTGCCACGATATGAAGATCAGAGGGGTGATTGGGAAGTCCGGCAGCATTATCAAGTAGATCCGGCAGCACATCAGCGTGTGGATCAACGTGCACGAGCTGGTTGCCGGAGACGAGGAGCGGATTCTCAAGATTTCCGGCGGGACTCGGAAGGAAGGATCCAGGCTGCTGGCAGAGGGATTTGCACGAACAGCTCTGAATTGCCACACCCATTATTAAGCTTTCAACTCCTAAGCATGGACTCGGACCCACCGTTTCACAAGGCCTACAAGACTTTTTTCGACAACGCCAGCACCACCACCGCCACTACCAACAACAACAACAATAACAAAGACAACAAAGACCAGGAAGCGATAAAGGTAATCGTCGAGGAATGCGAGCTGCCGCTGATTGATCTGCGGCGGCTAGAGCTCGGGGACTCCGAGGGAGAGGAGTGCAAATCGGAGATAGCTAGGGCATCGCAGGAGTGGGGATTTTTTCAGGTTGTGAACCATGGGATTTCAAGCGAGCTTTTGCAGAAGATGAAGAGTGAGCAAGAAAAGGTATTCCAGCAATCGTTTGACAAGAAGAGCCAAGAACACAAGTACTTGAACTTTTCGGCAGGTACTTACCGTTGGGGAAGTCCTACGGCCACAAGCCTGAGACAGTTATCATGGTCTGAAGCTTTTCACATTCCACTCAACAAGATTTTTGCTTCCTCGGCTGCTGGTCTCGACGATCTCAGCTCAACGATGGAACAGTTTGCCACAACAGTTTCTAGTCTGGCACTGAAATTAGCTGAAATTTTGGCCGAGAAATTGGGTCACAAATCGACATTCTTCCACGAAAATTGTTTACCAAGCACTTGCTATCTTCGGATGAACCGATATCCACCATGTCCAATTCCTTCAGAGGTATTTGGTTTGATGCCACACACTGACAGTGACTTTCTCACTATATTGCATCAAGACCAGGTTGGGGGATTGCAATTGGTCAAAGATGATCGATGGATCGCAGTGAAGCCTAATCCAGAAGCTCTAATCATCAACATTGGGGATTTATTTCAGGCATGGAGCAACAATGTCTACAAGAGTGTTCAACATCGAGTTGTCACAAATTTGCAAGTTGAACGATTCTCCACTGCATACTTCTTTTGTCCATCTTATGAAACCATGATAGAGAGTTGTTGCGAGCCTTCGGTTTATAGAAAATTCAGCTTTGGGGAATATCGACACCAAGTCCAAGAGGATGTTAAACAATTGGGTTCTAAAGTAGGCCTTCCTAGGTTTCTTGTCTAA

Protein Analysis

449

Amino Acids

50.71

Weight (kDa)

5.33

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 152 - 249 2.2e-17 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 307 - 404 9.6e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
Acc36I ACCTGC 1 cut(s) 665
AccBSI CCGCTC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 1137
AciI CCGC 6 cut(s) 194, 214, 375, 458, 472, 475
AclWI GGATC 5 cut(s) 128, 165, 226, 239, 1070
AcoI YGGCCR 2 cut(s) 702, 861
AcsI RAATTY 3 cut(s) 855, 1168, 1262
AcuI CTGAAG 2 cut(s) 753, 945
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 659, 679
AfiI CCNNNNNNNGG 2 cut(s) 310, 1030
AgsI TTSAA 5 cut(s) 299, 576, 664, 1151, 1181
AhdI GACNNNNNGTC 1 cut(s) 1289
AjnI CCWGG 3 cut(s) 234, 417, 1023
Alw21I GWGCWC 2 cut(s) 169, 486
Alw26I GTCTC 4 cut(s) 30, 178, 709, 788
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 5 cut(s) 128, 165, 226, 239, 1070
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 4 cut(s) 336, 702, 861, 1327
ApaLI GTGCAC 1 cut(s) 165
ApeKI GCWGC 6 cut(s) 23, 118, 140, 239, 454, 776
ApoI RAATTY 3 cut(s) 855, 1168, 1262
Asp700I GAANNNNTTC 1 cut(s) 738
AspA2I CCTAGG 1 cut(s) 1334
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 4 cut(s) 26, 59, 65, 113
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 319
AvrII CCTAGG 1 cut(s) 1334
BaeGI GKGCMC 1 cut(s) 169
BamHI GGATCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 486
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 169, 486
BbvI GCAGC 6 cut(s) 35, 130, 152, 226, 441, 763
BccI CCATC 4 cut(s) 44, 799, 1053, 1219
BceAI ACGGC 1 cut(s) 717
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 3 cut(s) 236, 419, 1025
BcoDI GTCTC 4 cut(s) 30, 178, 709, 788
BfaI CTAG 4 cut(s) 479, 525, 831, 1335
BfuAI ACCTGC 1 cut(s) 665
BisI GCNGC 9 cut(s) 24, 119, 141, 240, 455, 458, 473, 476, 777
BlnI CCTAGG 1 cut(s) 1334
BlsI GCNGC 9 cut(s) 25, 120, 142, 241, 456, 459, 474, 477, 778
BmcAI AGTACT 1 cut(s) 659
Bme1390I CCNGG 3 cut(s) 236, 419, 1025
Bme18I GGWCC 1 cut(s) 319
BmeRI GACNNNNNGTC 1 cut(s) 1289
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 233, 321
BmrFI CCNGG 3 cut(s) 236, 419, 1025
BmsI GCATC 3 cut(s) 539, 969, 1024
Bpu10I CCTNAGC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 1057
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 4 cut(s) 495, 565, 771, 1334
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 1030
BseBI CCWGG 3 cut(s) 236, 419, 1025
BseCI ATCGAT 1 cut(s) 1057
BseDI CCNNGG 4 cut(s) 495, 565, 771, 1334
BseGI GGATG 2 cut(s) 936, 1306
BseLI CCNNNNNNNGG 2 cut(s) 310, 1030
BseMII CTCAG 2 cut(s) 704, 808
BseRI GAGGAG 2 cut(s) 204, 518
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 6 cut(s) 35, 130, 152, 226, 441, 763
BshFI GGCC 4 cut(s) 338, 704, 863, 1329
BshVI ATCGAT 1 cut(s) 1057
BsiHKAI GWGCWC 2 cut(s) 169, 486
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 4 cut(s) 115, 137, 181, 211
BslFI GGGAC 2 cut(s) 230, 503
BslI CCNNNNNNNGG 2 cut(s) 310, 1030
BsmAI GTCTC 4 cut(s) 30, 178, 709, 788
BsmBI CGTCTC 2 cut(s) 30, 178
BsmFI GGGAC 2 cut(s) 230, 503
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 4 cut(s) 338, 704, 863, 1329
Bso31I GGTCTC 1 cut(s) 788
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 169, 486
Bsp143I GATC 8 cut(s) 91, 133, 157, 231, 466, 790, 1054, 1062
Bsp19I CCATGG 1 cut(s) 565
BspACI CCGC 6 cut(s) 194, 214, 375, 458, 472, 475
BspANI GGCC 4 cut(s) 338, 704, 863, 1329
BspCNI CTCAG 2 cut(s) 705, 807
BspDI ATCGAT 1 cut(s) 1057
BspLI GGNNCC 2 cut(s) 233, 321
BspMI ACCTGC 1 cut(s) 665
BspPI GGATC 5 cut(s) 128, 165, 226, 239, 1070
BspQI GCTCTTC 1 cut(s) 635
BspTNI GGTCTC 1 cut(s) 788
BsrBI CCGCTC 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 495, 565, 771, 1334
BssMI GATC 8 cut(s) 91, 133, 157, 231, 466, 790, 1054, 1062
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 2 cut(s) 565, 1334
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 236, 419, 1025
Bst4CI ACNGT 7 cut(s) 14, 327, 686, 720, 813, 826, 995
Bst6I CTCTTC 2 cut(s) 593, 635
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 5 cut(s) 244, 364, 452, 581, 1244
BstDEI CTNAG 3 cut(s) 305, 713, 794
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 2 cut(s) 936, 1306
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 8 cut(s) 94, 136, 160, 234, 469, 793, 1057, 1065
BstMAI GTCTC 4 cut(s) 30, 178, 709, 788
BstMBI GATC 8 cut(s) 91, 133, 157, 231, 466, 790, 1054, 1062
BstMWI GCNNNNNNNGC 4 cut(s) 29, 264, 481, 773
BstNI CCWGG 3 cut(s) 236, 419, 1025
BstSCI CCNGG 3 cut(s) 234, 417, 1023
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 6 cut(s) 35, 130, 152, 226, 441, 763
BstX2I RGATCY 2 cut(s) 133, 231
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 2 cut(s) 133, 231
Bsu15I ATCGAT 1 cut(s) 1057
BsuRI GGCC 4 cut(s) 338, 704, 863, 1329
BsuTUI ATCGAT 1 cut(s) 1057
BtgI CCRYGG 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 516
BtsCI GGATG 2 cut(s) 936, 1306
BtsI GCAGTG 2 cut(s) 1074, 1191
BtsIMutI CAGTG 5 cut(s) 839, 987, 1000, 1074, 1191
BveI ACCTGC 1 cut(s) 665
Cac8I GCNNGC 5 cut(s) 244, 364, 452, 581, 1244
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 319
ClaI ATCGAT 1 cut(s) 1057
CsiI ACCWGGT 1 cut(s) 1023
Csp6I GTAC 2 cut(s) 658, 678
CspCI CAANNNNNGTGG 2 cut(s) 884, 919
CviAII CATG 6 cut(s) 310, 566, 726, 948, 1122, 1225
CviQI GTAC 2 cut(s) 658, 678
DdeI CTNAG 3 cut(s) 305, 713, 794
DpnI GATC 8 cut(s) 93, 135, 159, 233, 468, 792, 1056, 1064
DpnII GATC 8 cut(s) 91, 133, 157, 231, 466, 790, 1054, 1062
DriI GACNNNNNGTC 1 cut(s) 1289
EaeI YGGCCR 2 cut(s) 702, 861
Eam1104I CTCTTC 2 cut(s) 593, 635
Eam1105I GACNNNNNGTC 1 cut(s) 1289
EarI CTCTTC 2 cut(s) 593, 635
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 565, 1334
Eco147I AGGCCT 2 cut(s) 338, 1329
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 788
Eco32I GATATC 1 cut(s) 941
Eco47I GGWCC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 2 cut(s) 753, 945
Eco88I CYCGRG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 484
EcoRII CCWGG 3 cut(s) 234, 417, 1023
EcoRV GATATC 1 cut(s) 941
EcoT14I CCWWGG 2 cut(s) 565, 1334
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 565, 1334
Esp3I CGTCTC 2 cut(s) 30, 178
FaeI CATG 6 cut(s) 313, 569, 729, 951, 1125, 1228
FalI AAGNNNNNCTT 2 cut(s) 1314, 1346
FaqI GGGAC 2 cut(s) 230, 503
FatI CATG 6 cut(s) 309, 565, 725, 947, 1121, 1224
FauI CCCGC 1 cut(s) 207
FblI GTMKAC 1 cut(s) 1137
Fnu4HI GCNGC 9 cut(s) 24, 119, 141, 240, 455, 458, 473, 476, 777
FokI GGATG 2 cut(s) 943, 1313
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 9 cut(s) 24, 119, 141, 240, 455, 458, 473, 476, 777
FspBI CTAG 4 cut(s) 479, 525, 831, 1335
GlaI GCGC 1 cut(s) 22
GluI GCNGC 9 cut(s) 24, 119, 141, 240, 455, 458, 473, 476, 777
HaeIII GGCC 4 cut(s) 338, 704, 863, 1329
HapII CCGG 4 cut(s) 115, 137, 181, 211
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 6 cut(s) 313, 569, 729, 951, 1125, 1228
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 2 cut(s) 292, 735
HinfI GANTC 6 cut(s) 71, 197, 218, 314, 491, 1185
HpaII CCGG 4 cut(s) 115, 137, 181, 211
HphI GGTGA 4 cut(s) 26, 59, 65, 113
Hpy166II GTNNAC 4 cut(s) 167, 562, 908, 1138
Hpy188III TCNNGA 4 cut(s) 203, 785, 1019, 1082
Hpy8I GTNNAC 4 cut(s) 167, 562, 908, 1138
Hpy99I CGWCG 5 cut(s) 14, 44, 47, 443, 791
HpyAV CCTTC 6 cut(s) 11, 218, 222, 969, 1257, 1340
HpyCH4III ACNGT 7 cut(s) 14, 327, 686, 720, 813, 826, 995
HpyCH4IV ACGT 3 cut(s) 42, 63, 163
HpyCH4V TGCA 8 cut(s) 167, 258, 510, 589, 1015, 1039, 1174, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 264, 481, 773
HpyF3I CTNAG 3 cut(s) 305, 713, 794
HpySE526I ACGT 3 cut(s) 42, 63, 163
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 6 cut(s) 313, 569, 729, 951, 1125, 1228
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 8 cut(s) 91, 133, 157, 231, 466, 790, 1054, 1062
LguI GCTCTTC 1 cut(s) 635
LmnI GCTCC 2 cut(s) 191, 1125
Lsp1109I GCAGC 6 cut(s) 35, 130, 152, 226, 441, 763
LweI GCATC 3 cut(s) 539, 969, 1024
MabI ACCWGGT 1 cut(s) 1023
MaeI CTAG 4 cut(s) 479, 525, 831, 1335
MaeII ACGT 3 cut(s) 42, 63, 163
MaeIII GTNAC 4 cut(s) 53, 875, 995, 1162
MalI GATC 8 cut(s) 93, 135, 159, 233, 468, 792, 1056, 1064
MbiI CCGCTC 1 cut(s) 194
MboI GATC 8 cut(s) 91, 133, 157, 231, 466, 790, 1054, 1062
MboII GAAGA 6 cut(s) 101, 604, 610, 652, 883, 917
MfeI CAATTG 2 cut(s) 1040, 1310
MflI RGATCY 2 cut(s) 133, 231
MhlI GDGCHC 2 cut(s) 169, 486
MlyI GAGTC 3 cut(s) 212, 308, 485
MnlI CCTC 9 cut(s) 90, 182, 242, 436, 490, 496, 781, 958, 1291
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 2 cut(s) 290, 1305
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 460
MspI CCGG 4 cut(s) 115, 137, 181, 211
MspR9I CCNGG 3 cut(s) 236, 419, 1025
MunI CAATTG 2 cut(s) 1040, 1310
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 3 cut(s) 236, 419, 1025
MwoI GCNNNNNNNGC 4 cut(s) 29, 264, 481, 773
NcoI CCATGG 1 cut(s) 565
NdeII GATC 8 cut(s) 91, 133, 157, 231, 466, 790, 1054, 1062
NlaIII CATG 6 cut(s) 313, 569, 729, 951, 1125, 1228
NlaIV GGNNCC 2 cut(s) 233, 321
NmeAIII GCCGAG 2 cut(s) 752, 889
NmuCI GTSAC 4 cut(s) 53, 875, 995, 1162
PceI AGGCCT 2 cut(s) 338, 1329
PciSI GCTCTTC 1 cut(s) 635
PcsI WCGNNNNNNNCGW 4 cut(s) 323, 447, 492, 934
PctI GAATGC 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 3 cut(s) 71, 197, 1185
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 9 cut(s) 25, 120, 142, 241, 456, 459, 474, 477, 778
PleI GAGTC 3 cut(s) 212, 308, 485
PpsI GAGTC 3 cut(s) 212, 308, 485
Psp124BI GAGCTC 1 cut(s) 486
Psp6I CCWGG 3 cut(s) 234, 417, 1023
PspGI CCWGG 3 cut(s) 234, 417, 1023
PspN4I GGNNCC 2 cut(s) 233, 321
PspPI GGNCC 1 cut(s) 319
PsuI RGATCY 2 cut(s) 133, 231
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 2 cut(s) 659, 679
RsaNI GTAC 2 cut(s) 658, 678
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 635
SaqAI TTAA 2 cut(s) 290, 1305
SatI GCNGC 9 cut(s) 24, 119, 141, 240, 455, 458, 473, 476, 777
Sau3AI GATC 8 cut(s) 91, 133, 157, 231, 466, 790, 1054, 1062
Sau96I GGNCC 1 cut(s) 319
ScaI AGTACT 1 cut(s) 659
SchI GAGTC 3 cut(s) 212, 308, 485
ScrFI CCNGG 3 cut(s) 236, 419, 1025
SduI GDGCHC 2 cut(s) 169, 486
SexAI ACCWGGT 1 cut(s) 1023
SfaNI GCATC 3 cut(s) 539, 969, 1024
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
SseBI AGGCCT 2 cut(s) 338, 1329
SsiI CCGC 6 cut(s) 194, 214, 375, 458, 472, 475
SspMI CTAG 4 cut(s) 479, 525, 831, 1335
SstI GAGCTC 1 cut(s) 486
StuI AGGCCT 2 cut(s) 338, 1329
StyD4I CCNGG 3 cut(s) 234, 417, 1023
StyI CCWWGG 2 cut(s) 565, 1334
TaaI ACNGT 7 cut(s) 14, 327, 686, 720, 813, 826, 995
TaiI ACGT 3 cut(s) 45, 66, 166
TaqI TCGA 7 cut(s) 354, 441, 786, 884, 1057, 1156, 1282
TatI WGTACW 1 cut(s) 657
TauI GCSGC 3 cut(s) 460, 475, 478
TfiI GAWTC 3 cut(s) 71, 197, 1185
Tru1I TTAA 2 cut(s) 290, 1305
Tru9I TTAA 2 cut(s) 290, 1305
TscAI CASTG 5 cut(s) 846, 994, 1000, 1074, 1198
TseFI GTSAC 4 cut(s) 53, 875, 995, 1162
TseI GCWGC 6 cut(s) 23, 118, 140, 239, 454, 776
Tsp45I GTSAC 4 cut(s) 53, 875, 995, 1162
TspDTI ATGAA 4 cut(s) 102, 611, 947, 1233
TspRI CASTG 5 cut(s) 846, 994, 1000, 1074, 1198
Tth111I GACNNNGTC 1 cut(s) 41
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 3 cut(s) 855, 1168, 1262
XmaJI CCTAGG 1 cut(s) 1334
XmiI GTMKAC 1 cut(s) 1137
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 4 cut(s) 479, 525, 831, 1335
ZraI GACGTC 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.