Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009862

Physical Location & Seq

Genomic Coordinates Reverse (-)

1228553 .. 1233073

Gene Structure 4521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G026300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGCCCAAGGAATGTGGTATTGTCGGTGGTCGACACATTAGTACGACCACAATCTTGTTTTTTTCTATTCGGAAGGTATATTTGCGTTCAATTTTCTTTTAATATCGTTTCTGATGAGAAGATTGAAAATCCTAGGTCTGAGGAAAATCCACGCGACAGCTCCCTCTGGCTACAGCCTTTAATAAGCATCATGGACTCGGACCCACCATTTCACAAGGCCTACAAGACCCTTTTCGACAAAACCGCGGACAAAGCCACCGCCACCATAATCAACAGCAACACCAACAACAAGGACCATGAGGAGATGCTGCAGCTTGTCATCGTCGAGGAATGCGACCTGCCGCTGATCGATCTGCAGCGGTTGGAGCTCGGAGAAAGGGAAAGGGAAGAGTGCAAGTTAGAGATAGCTAGGGCTTCTCAAGAGTGGGGTTTCTTTCAGGTTGTGAACCATGGGGTTTCTGGTGGGCTGCTTCAAAAGATGAAGATTGAGCAAGAGAAGGTGTTCAAGCAGTCGTTTGATAAGAAGAGTCAGGAGGACAAGCACTTGAATTTCTCTGCGGGTAGTTACCGTTGGGGAACGCCTTCAGCCACATGCCTAAGACAATTGGCTTGGTCTGAAGCGTTTCACATTCCACTCAAAGATATTTCCACCTCATCAGCAGCTGGTCTCGATTATAATCTCAGCTCGACAATGGAACAGTTTGCTACAACAGTTTCAAGTCTGGCACTGAACTTGGCTGAAATTTTAGCTGAGAAATTGGGTCACAAGTCGACATTTTTCCAAGCAAATTGTTTGCCCAGCACGTGCTATCTCCGATTGAACCGATATCCACCATGCCCCATCCCTTCTGAGGTGTTTGGGTTGATGCCACACACTGATAGCGACTTCCTTACAATTTTGCATCAAGACCAGGTTGGAGGACTGCAGTTGGTCAAGGATGGGATATGGATCGCGGTTAAACCTAATCCTGCGGCCCTAATCATCAACATCGGAGATTTATTTCAGGCATGGAGCAACAATGTGTACAAGAGTGTTCAACATCGAGTGGTCACGAATTTGGCAGTGGAACGATTCTCGACTGCATATTTCCTATGCCCTTCGTATGAGACTGTGATACAAAGCTGCCGTGAGCCTTCGGTGTATAGAAAATTCAGCTTCGGGGAGTATAGGCGGCAAGTCCAAGAGGATGTTAAAATGCTGGGTTCCAAAATAGGGCTTCCTAGGTTTGTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

413

Amino Acids

46.75

Weight (kDa)

6.04

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21200 AT4G21200 AT4G21200
fragaria_vesca	FvH4_3g02670
malus_domestica	MD05G1341000.v1.1 MD10G1314500.v1.1
prunus_persica	Prupe.4G026300_v2.0.a1 Prupe.4G026300_v2.0.a1
pyrus_communis	pycom10g26660
rosa_chinensis	RchiOBHm_Chr5g0003991
rosa_laevigata	RLG00000031195
rosa_multiflora	Rmu_sc0000547.1_g000014
rosa_roxburghii	Rroxscaffold_1G00071690 Rroxscaffold_1G00071970
rosa_rugosa	Rorug04G0408800 Rorug04G0408900
rosa_samantha	Rh5AG036600 Rh5BG035700 Rh5CG039200 Rh5DG035100
rosa_wichuraiana	Rw5G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	348
AccI	GTMKAC	2 cut(s)	33, 773
AccII	CGCG	3 cut(s)	156, 248, 956
AciI	CCGC	9 cut(s)	246, 248, 261, 344, 361, 560, 956, 974, 1174
AclWI	GGATC	1 cut(s)	959
AcsI	RAATTY	4 cut(s)	550, 744, 1057, 1151
AcuI	CTGAAG	2 cut(s)	570, 639
AcvI	CACGTG	1 cut(s)	807
AfaI	GTAC	2 cut(s)	45, 1028
AfiI	CCNNNNNNNGG	2 cut(s)	853, 1215
AgsI	TTSAA	8 cut(s)	92, 128, 476, 508, 550, 720, 823, 1040
AjnI	CCWGG	1 cut(s)	912
AluBI	AGCT	9 cut(s)	162, 316, 370, 410, 665, 687, 752, 1125, 1158
AluI	AGCT	9 cut(s)	162, 316, 370, 410, 665, 687, 752, 1125, 1158
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	674, 1103
AlwI	GGATC	1 cut(s)	959
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	3 cut(s)	4, 219, 975
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	6 cut(s)	310, 313, 358, 469, 662, 1125
ApoI	RAATTY	4 cut(s)	550, 744, 1057, 1151
Asp700I	GAANNNNTTC	3 cut(s)	503, 583, 624
AspA2I	CCTAGG	2 cut(s)	134, 1223
AspS9I	GGNCC	5 cut(s)	4, 5, 202, 295, 976
AvaII	GGWCC	2 cut(s)	202, 295
AvrII	CCTAGG	2 cut(s)	134, 1223
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	8, 372
BbrPI	CACGTG	1 cut(s)	807
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	6 cut(s)	297, 325, 370, 456, 674, 1112
BccI	CCATC	2 cut(s)	851, 935
BceAI	ACGGC	1 cut(s)	1113
BciT130I	CCWGG	1 cut(s)	914
BcoDI	GTCTC	2 cut(s)	674, 1103
BfaI	CTAG	3 cut(s)	135, 411, 1224
BfmI	CTRYAG	4 cut(s)	173, 311, 356, 926
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	9 cut(s)	311, 314, 344, 359, 470, 663, 975, 1126, 1175
BlnI	CCTAGG	2 cut(s)	134, 1223
BlsI	GCNGC	9 cut(s)	312, 315, 345, 360, 471, 664, 976, 1127, 1176
Bme1390I	CCNGG	1 cut(s)	914
Bme18I	GGWCC	2 cut(s)	202, 295
BmgT120I	GGNCC	5 cut(s)	4, 5, 202, 295, 976
BmiI	GGNNCC	3 cut(s)	6, 204, 1207
BmrFI	CCNGG	1 cut(s)	914
BmsI	GCATC	4 cut(s)	198, 297, 858, 913
BpuEI	CTTGAG	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	807
BsaBI	GATNNNNATC	2 cut(s)	678, 950
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	5 cut(s)	8, 134, 246, 451, 1223
Bsc4I	CCNNNNNNNGG	2 cut(s)	853, 1215
Bse8I	GATNNNNATC	2 cut(s)	678, 950
BseBI	CCWGG	1 cut(s)	914
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	5 cut(s)	8, 134, 246, 451, 1223
BseGI	GGATG	3 cut(s)	843, 946, 1195
BseJI	GATNNNNATC	2 cut(s)	678, 950
BseLI	CCNNNNNNNGG	2 cut(s)	853, 1215
BseMII	CTCAG	4 cut(s)	132, 697, 744, 843
BseRI	GAGGAG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	6 cut(s)	297, 325, 370, 456, 674, 1112
BseYI	CCCAGC	2 cut(s)	800, 1201
Bsh1236I	CGCG	3 cut(s)	156, 248, 956
BshFI	GGCC	3 cut(s)	6, 221, 977
BshVI	ATCGAT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	853, 1215
BsmAI	GTCTC	2 cut(s)	674, 1103
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	3 cut(s)	6, 221, 977
Bso31I	GGTCTC	1 cut(s)	674
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	2 cut(s)	8, 372
Bsp1407I	TGTACA	1 cut(s)	1026
Bsp143I	GATC	3 cut(s)	348, 352, 951
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	9 cut(s)	246, 248, 261, 344, 361, 560, 956, 974, 1174
BspANI	GGCC	3 cut(s)	6, 221, 977
BspCNI	CTCAG	4 cut(s)	133, 696, 745, 844
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	3 cut(s)	156, 248, 956
BspLI	GGNNCC	3 cut(s)	6, 204, 1207
BspMAI	CTGCAG	3 cut(s)	315, 360, 930
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	959
BspTNI	GGTCTC	1 cut(s)	674
BsrGI	TGTACA	1 cut(s)	1026
BssECI	CCNNGG	5 cut(s)	8, 134, 246, 451, 1223
BssMI	GATC	3 cut(s)	348, 352, 951
BssT1I	CCWWGG	4 cut(s)	8, 134, 451, 1223
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	4 cut(s)	572, 702, 715, 1114
Bst6I	CTCTTC	2 cut(s)	384, 521
BstAUI	TGTACA	1 cut(s)	1026
BstBAI	YACGTR	1 cut(s)	807
BstDEI	CTNAG	5 cut(s)	141, 599, 683, 753, 852
BstDSI	CCRYGG	2 cut(s)	246, 451
BstF5I	GGATG	3 cut(s)	843, 946, 1195
BstFNI	CGCG	3 cut(s)	156, 248, 956
BstKTI	GATC	3 cut(s)	351, 355, 954
BstMAI	GTCTC	2 cut(s)	674, 1103
BstMBI	GATC	3 cut(s)	348, 352, 951
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 367
BstNI	CCWGG	1 cut(s)	914
BstNSI	RCATGY	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	912
BstSFI	CTRYAG	4 cut(s)	173, 311, 356, 926
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	3 cut(s)	156, 248, 956
BstV1I	GCAGC	6 cut(s)	297, 325, 370, 456, 674, 1112
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	6, 221, 977
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	2 cut(s)	246, 451
BtsCI	GGATG	3 cut(s)	843, 946, 1195
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	3 cut(s)	728, 876, 1071
BveI	ACCTGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	665
Cfr13I	GGNCC	5 cut(s)	4, 5, 202, 295, 976
Cfr42I	CCGCGG	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	351
CsiI	ACCWGGT	1 cut(s)	912
Csp6I	GTAC	2 cut(s)	44, 1027
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	6 cut(s)	193, 299, 452, 594, 837, 1011
CviQI	GTAC	2 cut(s)	44, 1027
DdeI	CTNAG	5 cut(s)	141, 599, 683, 753, 852
DpnI	GATC	3 cut(s)	350, 354, 953
DpnII	GATC	3 cut(s)	348, 352, 951
Eam1104I	CTCTTC	2 cut(s)	384, 521
EarI	CTCTTC	2 cut(s)	384, 521
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	4 cut(s)	8, 134, 451, 1223
Eco147I	AGGCCT	1 cut(s)	221
Eco24I	GRGCYC	2 cut(s)	8, 372
Eco31I	GGTCTC	1 cut(s)	674
Eco32I	GATATC	1 cut(s)	830
Eco47I	GGWCC	2 cut(s)	202, 295
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	570, 639
Eco72I	CACGTG	1 cut(s)	807
EcoICRI	GAGCTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	912
EcoRV	GATATC	1 cut(s)	830
EcoT14I	CCWWGG	4 cut(s)	8, 134, 451, 1223
EcoT38I	GRGCYC	2 cut(s)	8, 372
ErhI	CCWWGG	4 cut(s)	8, 134, 451, 1223
FaeI	CATG	6 cut(s)	196, 302, 455, 597, 840, 1014
FatI	CATG	6 cut(s)	192, 298, 451, 593, 836, 1010
FauI	CCCGC	1 cut(s)	553
FblI	GTMKAC	2 cut(s)	33, 773
Fnu4HI	GCNGC	9 cut(s)	311, 314, 344, 359, 470, 663, 975, 1126, 1175
FokI	GGATG	3 cut(s)	830, 953, 1202
FriOI	GRGCYC	2 cut(s)	8, 372
Fsp4HI	GCNGC	9 cut(s)	311, 314, 344, 359, 470, 663, 975, 1126, 1175
FspBI	CTAG	3 cut(s)	135, 411, 1224
GluI	GCNGC	9 cut(s)	311, 314, 344, 359, 470, 663, 975, 1126, 1175
GsaI	CCCAGC	2 cut(s)	804, 1205
HaeIII	GGCC	3 cut(s)	6, 221, 977
Hin1II	CATG	6 cut(s)	196, 302, 455, 597, 840, 1014
HincII	GTYRAC	2 cut(s)	34, 774
HindII	GTYRAC	2 cut(s)	34, 774
HinfI	GANTC	3 cut(s)	197, 529, 1074
Hpy166II	GTNNAC	4 cut(s)	34, 448, 774, 1027
Hpy188I	TCNGA	9 cut(s)	74, 115, 142, 202, 374, 619, 818, 853, 995
Hpy188III	TCNNGA	6 cut(s)	422, 533, 671, 908, 1054, 1078
Hpy8I	GTNNAC	4 cut(s)	34, 448, 774, 1027
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	6 cut(s)	69, 493, 594, 858, 1110, 1146
HpyCH4III	ACNGT	4 cut(s)	572, 702, 715, 1114
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	6 cut(s)	313, 358, 396, 904, 928, 1085
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 367
HpyF3I	CTNAG	5 cut(s)	141, 599, 683, 753, 852
HpySE526I	ACGT	1 cut(s)	806
Hsp92II	CATG	6 cut(s)	196, 302, 455, 597, 840, 1014
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	348, 352, 951
LmnI	GCTCC	3 cut(s)	167, 367, 1014
Lsp1109I	GCAGC	6 cut(s)	297, 325, 370, 456, 674, 1112
LweI	GCATC	4 cut(s)	198, 297, 858, 913
MabI	ACCWGGT	1 cut(s)	912
MaeI	CTAG	3 cut(s)	135, 411, 1224
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	3 cut(s)	566, 764, 1051
MalI	GATC	3 cut(s)	350, 354, 953
MboI	GATC	3 cut(s)	348, 352, 951
MboII	GAAGA	4 cut(s)	133, 401, 496, 538
MfeI	CAATTG	1 cut(s)	605
MhlI	GDGCHC	2 cut(s)	8, 372
MluCI	AATT	9 cut(s)	92, 550, 605, 744, 758, 790, 897, 1057, 1151
MlyI	GAGTC	2 cut(s)	191, 538
MmeI	TCCRAC	2 cut(s)	345, 898
MnlI	CCTC	9 cut(s)	136, 176, 295, 322, 529, 664, 847, 914, 1180
MroXI	GAANNNNTTC	3 cut(s)	503, 583, 624
MseI	TTAA	4 cut(s)	102, 182, 960, 1194
MspA1I	CMGCKG	4 cut(s)	248, 346, 361, 665
MspR9I	CCNGG	1 cut(s)	914
MunI	CAATTG	1 cut(s)	605
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	914
MvnI	CGCG	3 cut(s)	156, 248, 956
MwoI	GCNNNNNNNGC	2 cut(s)	254, 367
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	3 cut(s)	348, 352, 951
NlaIII	CATG	6 cut(s)	196, 302, 455, 597, 840, 1014
NlaIV	GGNNCC	3 cut(s)	6, 204, 1207
NmuCI	GTSAC	2 cut(s)	764, 1051
NspI	RCATGY	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	338
PdmI	GAANNNNTTC	3 cut(s)	503, 583, 624
PfeI	GAWTC	1 cut(s)	1074
PkrI	GCNGC	9 cut(s)	312, 315, 345, 360, 471, 664, 976, 1127, 1176
PleI	GAGTC	2 cut(s)	191, 537
PmaCI	CACGTG	1 cut(s)	807
PmlI	CACGTG	1 cut(s)	807
PpsI	GAGTC	2 cut(s)	191, 537
Ppu21I	YACGTR	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	912
PspCI	CACGTG	1 cut(s)	807
PspFI	CCCAGC	2 cut(s)	800, 1201
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	3 cut(s)	6, 204, 1207
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	5 cut(s)	4, 5, 202, 295, 976
PstI	CTGCAG	3 cut(s)	315, 360, 930
PstNI	CAGNNNCTG	1 cut(s)	665
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	2 cut(s)	45, 1028
RsaNI	GTAC	2 cut(s)	44, 1027
SacI	GAGCTC	1 cut(s)	372
SacII	CCGCGG	1 cut(s)	249
SalI	GTCGAC	2 cut(s)	32, 772
SaqAI	TTAA	4 cut(s)	102, 182, 960, 1194
SatI	GCNGC	9 cut(s)	311, 314, 344, 359, 470, 663, 975, 1126, 1175
Sau3AI	GATC	3 cut(s)	348, 352, 951
Sau96I	GGNCC	5 cut(s)	4, 5, 202, 295, 976
SchI	GAGTC	2 cut(s)	191, 538
ScrFI	CCNGG	1 cut(s)	914
SduI	GDGCHC	2 cut(s)	8, 372
SexAI	ACCWGGT	1 cut(s)	912
SfaNI	GCATC	4 cut(s)	198, 297, 858, 913
SfcI	CTRYAG	4 cut(s)	173, 311, 356, 926
Sfr303I	CCGCGG	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	202, 295
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
Sse9I	AATT	9 cut(s)	92, 550, 605, 744, 758, 790, 897, 1057, 1151
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	9 cut(s)	246, 248, 261, 344, 361, 560, 956, 974, 1174
SspMI	CTAG	3 cut(s)	135, 411, 1224
SstI	GAGCTC	1 cut(s)	372
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	912
StyI	CCWWGG	4 cut(s)	8, 134, 451, 1223
TaaI	ACNGT	4 cut(s)	572, 702, 715, 1114
TaiI	ACGT	1 cut(s)	809
TaqI	TCGA	9 cut(s)	33, 237, 327, 351, 672, 689, 773, 1045, 1079
TasI	AATT	9 cut(s)	92, 550, 605, 744, 758, 790, 897, 1057, 1151
TatI	WGTACW	1 cut(s)	1026
TauI	GCSGC	3 cut(s)	346, 977, 1177
TfiI	GAWTC	1 cut(s)	1074
Tru1I	TTAA	4 cut(s)	102, 182, 960, 1194
Tru9I	TTAA	4 cut(s)	102, 182, 960, 1194
TscAI	CASTG	3 cut(s)	735, 883, 1071
TseFI	GTSAC	2 cut(s)	764, 1051
TseI	GCWGC	6 cut(s)	310, 313, 358, 469, 662, 1125
Tsp45I	GTSAC	2 cut(s)	764, 1051
TspDTI	ATGAA	1 cut(s)	497
TspRI	CASTG	3 cut(s)	735, 883, 1071
VpaK11BI	GGWCC	2 cut(s)	202, 295
XapI	RAATTY	4 cut(s)	550, 744, 1057, 1151
XceI	RCATGY	1 cut(s)	597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XmaJI	CCTAGG	2 cut(s)	134, 1223
XmiI	GTMKAC	2 cut(s)	33, 773
XmnI	GAANNNNTTC	3 cut(s)	503, 583, 624
XspI	CTAG	3 cut(s)	135, 411, 1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.