Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009862

Physical Location & Seq

Genomic Coordinates Forward (+)

39874287 .. 39877183

Gene Structure 2897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1314500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGACTCGGACCCACCATTTCGCAAGGCCTACAAGACCCTTTTCGACAACACCGTCAACAAAGCCAACAACATCAGCAACAACAAGGAGGAGGTGATACAACAGTTTGTTACAGTGGAGGAATGTGAACTGCCGCTGATTGATCTTGGGCGGCTGGAGCTCGGAGAAAAGGAGAGGGAGAAGTGCATGACGGAAATAGCTAGGGCATCGCAAGAGTGGGGTTTCTTTCAGGTAGTGAATCATGGGATTTCAGGAGGGCTTCTTCAGAAGATGAAGAGTGAGCAAGAGAAGGTATTCAAGCAATCTTTTGATAAGAAGAGGCAAGAGGACAAGCACTTGAACTTTTCACCGGGAACTTATCGTTGGGGAACTCCTTCTGCCACATGCCTACGGCAGTTAGCATGGTCTGAAGCTTTTCACATTCCACTCAACGACATTTCTGCTACATCAGCTTCTGGTCTCAACCATACACTCAGCTCAACAATGGAACAATTTGCTACAACAGTTTCAAGTTTGGCACTGAAATTGGCTGAAATTTTGGCGGAGAAATTAGGTCACAAGTCAACATTTTTCCTAGAAAATTGTTTGCCCAGCACTTGCTATCTTCGAATGAACCGATATCCGCCTTGCCCCATCCCTTCTGAGGTGTTTGGATTGATGCCACACACTGATAGTGATTTCCTTACAATATTGCACCAAGACCAGGTTGGAGGATTGCAGTTGATCAAAGACGATAGATGGATCGCAGTTAAACCTAATCCAGAAGCTCTAATCATTAACATTGGAGATCTATTTCAGGCATGGAGCAACAATGTGTACAAGAGTGTTCAACATCGAGTTGTCACGAATTTGCAAGTGGAACGATTCTCAACCGCATATTTCTTATGTCCTTCATATGACACCGTGATACAGAGTTGCAGGGAGCCTTCTGTCTATAGAAAATTCAGCTTTGGGGAGTATAGGCGGCAAGTCCAAGAGGATGTTCAAAAATTGGGTTCAAAAATTGGTCTTCCGAGATTTGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

343

Amino Acids

39.03

Weight (kDa)

6.72

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 143	2.5e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	200 - 297	8.6e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21200 AT4G21200 AT4G21200
fragaria_vesca	FvH4_3g02670
malus_domestica	MD05G1341000.v1.1 MD10G1314500.v1.1
prunus_persica	Prupe.4G026300_v2.0.a1 Prupe.4G026300_v2.0.a1
pyrus_communis	pycom10g26660
rosa_chinensis	RchiOBHm_Chr5g0003991
rosa_laevigata	RLG00000031195
rosa_multiflora	Rmu_sc0000547.1_g000014
rosa_roxburghii	Rroxscaffold_1G00071690 Rroxscaffold_1G00071970
rosa_rugosa	Rorug04G0408800 Rorug04G0408900
rosa_samantha	Rh5AG036600 Rh5BG035700 Rh5CG039200 Rh5DG035100
rosa_wichuraiana	Rw5G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AciI	CCGC	6 cut(s)	134, 151, 542, 623, 873, 964
AclWI	GGATC	1 cut(s)	749
AcsI	RAATTY	3 cut(s)	534, 847, 941
AcuI	CTGAAG	2 cut(s)	248, 429
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	2 cut(s)	643, 703
AgsI	TTSAA	6 cut(s)	298, 340, 510, 830, 986, 999
AjnI	CCWGG	1 cut(s)	702
AjuI	GAANNNNNNNTTGG	4 cut(s)	346, 378, 966, 998
AluBI	AGCT	7 cut(s)	160, 200, 413, 452, 477, 767, 948
AluI	AGCT	7 cut(s)	160, 200, 413, 452, 477, 767, 948
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	749
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	27
ApoI	RAATTY	3 cut(s)	534, 847, 941
Asp700I	GAANNNNTTC	3 cut(s)	293, 373, 414
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	106, 339
AsuII	TTCGAA	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	10
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	1001
Bbv12I	GWGCWC	1 cut(s)	162
BccI	CCATC	2 cut(s)	641, 732
BceAI	ACGGC	1 cut(s)	407
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	704
BclI	TGATCA	1 cut(s)	723
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	201, 575
BfmI	CTRYAG	1 cut(s)	934
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	3 cut(s)	134, 152, 965
BlsI	GCNGC	3 cut(s)	135, 153, 966
Bme1390I	CCNGG	2 cut(s)	351, 704
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	12, 924
BmrFI	CCNGG	2 cut(s)	351, 704
BmsI	GCATC	2 cut(s)	215, 648
BpiI	GAAGAC	1 cut(s)	1001
BpmI	CTGGAG	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 703
BseBI	CCWGG	1 cut(s)	704
BseGI	GGATG	2 cut(s)	633, 985
BseLI	CCNNNNNNNGG	2 cut(s)	643, 703
BseMII	CTCAG	2 cut(s)	487, 633
BseRI	GAGGAG	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	590
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	643, 703
BsmAI	GTCTC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	4 cut(s)	142, 723, 741, 787
BspACI	CCGC	6 cut(s)	134, 151, 542, 623, 873, 964
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	486, 634
BspLI	GGNNCC	2 cut(s)	12, 924
BspPI	GGATC	1 cut(s)	749
BspT104I	TTCGAA	1 cut(s)	607
BspTNI	GGTCTC	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	816
BssMI	GATC	4 cut(s)	142, 723, 741, 787
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	5 cut(s)	55, 105, 115, 505, 904
Bst6I	CTCTTC	2 cut(s)	269, 311
BstAUI	TGTACA	1 cut(s)	816
BstBI	TTCGAA	1 cut(s)	607
BstDEI	CTNAG	2 cut(s)	473, 642
BstF5I	GGATG	2 cut(s)	633, 985
BstKTI	GATC	4 cut(s)	145, 726, 744, 790
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	4 cut(s)	142, 723, 741, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 449
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	349, 702
BstSFI	CTRYAG	1 cut(s)	934
BstV2I	GAAGAC	1 cut(s)	1001
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	633, 985
BtsIMutI	CAGTG	3 cut(s)	120, 518, 666
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	10
CsiI	ACCWGGT	1 cut(s)	702
Csp6I	GTAC	1 cut(s)	817
CviAII	CATG	5 cut(s)	187, 242, 384, 402, 801
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	2 cut(s)	473, 642
DpnI	GATC	4 cut(s)	144, 725, 743, 789
DpnII	GATC	4 cut(s)	142, 723, 741, 787
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	269, 311
EarI	CTCTTC	2 cut(s)	269, 311
EciI	GGCGGA	2 cut(s)	557, 612
Ecl136II	GAGCTC	1 cut(s)	160
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	464
Eco32I	GATATC	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	248, 429
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	702
EcoRV	GATATC	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	5 cut(s)	190, 245, 387, 405, 804
FatI	CATG	5 cut(s)	186, 241, 383, 401, 800
FauNDI	CATATG	1 cut(s)	895
FbaI	TGATCA	1 cut(s)	723
Fnu4HI	GCNGC	3 cut(s)	134, 152, 965
FokI	GGATG	2 cut(s)	620, 992
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	134, 152, 965
FspBI	CTAG	2 cut(s)	201, 575
GluI	GCNGC	3 cut(s)	134, 152, 965
GsaI	CCCAGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	5 cut(s)	190, 245, 387, 405, 804
HincII	GTYRAC	2 cut(s)	58, 564
HindII	GTYRAC	2 cut(s)	58, 564
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	3 cut(s)	5, 238, 864
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	106, 339
Hpy166II	GTNNAC	4 cut(s)	58, 128, 564, 817
Hpy188I	TCNGA	6 cut(s)	10, 164, 267, 409, 643, 1014
Hpy188III	TCNNGA	3 cut(s)	252, 761, 844
Hpy8I	GTNNAC	4 cut(s)	58, 128, 564, 817
HpyAV	CCTTC	5 cut(s)	283, 384, 648, 900, 936
HpyCH4III	ACNGT	5 cut(s)	55, 105, 115, 505, 904
HpyCH4V	TGCA	5 cut(s)	186, 694, 718, 853, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 449
HpyF3I	CTNAG	2 cut(s)	473, 642
Hsp92II	CATG	5 cut(s)	190, 245, 387, 405, 804
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	4 cut(s)	142, 723, 741, 787
LmnI	GCTCC	3 cut(s)	157, 804, 922
LweI	GCATC	2 cut(s)	215, 648
MabI	ACCWGGT	1 cut(s)	702
MaeI	CTAG	2 cut(s)	201, 575
MaeIII	GTNAC	3 cut(s)	109, 554, 841
MalI	GATC	4 cut(s)	144, 725, 743, 789
MboI	GATC	4 cut(s)	142, 723, 741, 787
MboII	GAAGA	6 cut(s)	254, 280, 286, 328, 596, 1001
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	9 cut(s)	491, 524, 534, 548, 580, 847, 941, 989, 1002
MmeI	TCCRAC	1 cut(s)	688
MroXI	GAANNNNTTC	3 cut(s)	293, 373, 414
MseI	TTAA	2 cut(s)	750, 777
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	351, 704
MvaI	CCWGG	1 cut(s)	704
MwoI	GCNNNNNNNGC	2 cut(s)	157, 449
NciI	CCSGG	1 cut(s)	351
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	4 cut(s)	142, 723, 741, 787
NlaIII	CATG	5 cut(s)	190, 245, 387, 405, 804
NlaIV	GGNNCC	2 cut(s)	12, 924
NmuCI	GTSAC	2 cut(s)	554, 841
NspI	RCATGY	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	607
PceI	AGGCCT	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 613
PdmI	GAANNNNTTC	3 cut(s)	293, 373, 414
PfeI	GAWTC	2 cut(s)	238, 864
PkrI	GCNGC	3 cut(s)	135, 153, 966
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	702
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	2 cut(s)	12, 924
PspPI	GGNCC	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	750, 777
SatI	GCNGC	3 cut(s)	134, 152, 965
Sau3AI	GATC	4 cut(s)	142, 723, 741, 787
Sau96I	GGNCC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	351, 704
SduI	GDGCHC	1 cut(s)	162
SexAI	ACCWGGT	1 cut(s)	702
SfaNI	GCATC	2 cut(s)	215, 648
SfcI	CTRYAG	1 cut(s)	934
SfuI	TTCGAA	1 cut(s)	607
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	9 cut(s)	491, 524, 534, 548, 580, 847, 941, 989, 1002
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	6 cut(s)	134, 151, 542, 623, 873, 964
SspI	AATATT	1 cut(s)	690
SspMI	CTAG	2 cut(s)	201, 575
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	349, 702
TaaI	ACNGT	5 cut(s)	55, 105, 115, 505, 904
TaqI	TCGA	3 cut(s)	45, 607, 835
TasI	AATT	9 cut(s)	491, 524, 534, 548, 580, 847, 941, 989, 1002
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	3 cut(s)	136, 154, 967
TfiI	GAWTC	2 cut(s)	238, 864
Tru1I	TTAA	2 cut(s)	750, 777
Tru9I	TTAA	2 cut(s)	750, 777
TscAI	CASTG	3 cut(s)	120, 525, 673
TseFI	GTSAC	2 cut(s)	554, 841
Tsp45I	GTSAC	2 cut(s)	554, 841
TspDTI	ATGAA	3 cut(s)	287, 626, 882
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	3 cut(s)	120, 525, 673
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	3 cut(s)	534, 847, 941
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704
XmnI	GAANNNNTTC	3 cut(s)	293, 373, 414
XspI	CTAG	2 cut(s)	201, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.