Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009862

Physical Location & Seq

Genomic Coordinates Forward (+)

93120301 .. 93127808

Gene Structure 7508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCGTTTCTCATTGTCTCCATCTCCAACTTTCAACTCCTAAGCATGGACTCGGACCCACCGTTTCACAAGGCCTACAAGACTTTTTTCGACAACGCCAGCACCACCACCGCCACTACCAACAACAACAACAATAACAAAGACAACAAATACCAGGAAGCGATAAAGGTAATCGTCGAGGAATGCGAGCTGCCGCTGATTGATCTGCGGCGGCTAGAGCTCGGGGACTCCGAGGGAGAGGAGTGCAAATCGGAGATAGCTAGGGCATCGCAGGAGTGGGGATTTTTTCAGGTTGTGAACCATGGGATTTCAAGCGAGCTTTTGCAGAAGATGAAGAGTGAGCAAGAAAAGGTATTCCAGCAATCGTTTGACAAGAAGAGCCAAGAACACAAGTACTTGAACTTTTCGGCAGGTACTTACCGTTGGGGAAGTCCTACGGCCACAAGCCTGAGACAGTTATCATGGTCTGAAGCTTTTCACATTCCACTCAACAAGATTTTTGCTTCCTCGGCTGCTGGTCTCGACGATCTCAGCTCAACGATGGAACAGTTTGCCACAACAGTTTCTAGTCTGGCACTGAAATTAGCTGAAATTTTGGCCGAGAAATTGGGTCACAAATCGACATTCTTCCACGAAAATTGTTTACCGAGCACTTGCTATCTTCGGATGAACCGATATCCACCATGTCCAATTCCTTCAGAGGTATTTGGTTTGATGCCACACACTGACAGTGACTTTCTCACTATATTGCATCAAGACCAGGTTGGGGGATTGCAATTGGTTAAAGATGATCGATGGATCGCAGTGAAGCCTAATCCAGAAGCTCTAATCATCAACATTGGGGATTTATTTCAGGCATGGAGCAACAATGTCTACAAGAGTGTTCAACATCGAGTTGTCACTAATTTGCAAGTTGAACGATTCTCCACTGCATACTTCTTTTGTCCATCTTATGAAACCATGATAGAGAGTTGTTGCGAGCCTTCGTTTTATAGAAAATTCAGCTTTGGGGAATATCGACGCCAAGTCCAAGAGGATGTTAAACAATTGGGTTCTAAAGTAGGCCTTCCTAGGTTTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

41.19

Weight (kDa)

5.78

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	64 - 161	1.5e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	219 - 316	6.5e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21200 AT4G21200 AT4G21200
fragaria_vesca	FvH4_3g02670
malus_domestica	MD05G1341000.v1.1 MD10G1314500.v1.1
prunus_persica	Prupe.4G026300_v2.0.a1 Prupe.4G026300_v2.0.a1
pyrus_communis	pycom10g26660
rosa_chinensis	RchiOBHm_Chr5g0003991
rosa_laevigata	RLG00000031195
rosa_multiflora	Rmu_sc0000547.1_g000014
rosa_roxburghii	Rroxscaffold_1G00071690 Rroxscaffold_1G00071970
rosa_rugosa	Rorug04G0408800 Rorug04G0408900
rosa_samantha	Rh5AG036600 Rh5BG035700 Rh5CG039200 Rh5DG035100
rosa_wichuraiana	Rw5G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	873
AciI	CCGC	4 cut(s)	111, 194, 208, 211
AclWI	GGATC	1 cut(s)	806
AcoI	YGGCCR	2 cut(s)	438, 597
AcsI	RAATTY	2 cut(s)	591, 998
AcuI	CTGAAG	2 cut(s)	489, 681
AcyI	GRCGYC	1 cut(s)	1021
AfaI	GTAC	2 cut(s)	395, 415
AfiI	CCNNNNNNNGG	2 cut(s)	46, 766
AgsI	TTSAA	5 cut(s)	35, 312, 400, 887, 917
AhdI	GACNNNNNGTC	1 cut(s)	1025
AjnI	CCWGG	2 cut(s)	153, 759
AluBI	AGCT	9 cut(s)	190, 220, 260, 319, 473, 534, 587, 824, 1005
AluI	AGCT	9 cut(s)	190, 220, 260, 319, 473, 534, 587, 824, 1005
Alw21I	GWGCWC	2 cut(s)	222, 653
Alw26I	GTCTC	3 cut(s)	22, 445, 524
AlwI	GGATC	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	72, 438, 597, 1063
ApeKI	GCWGC	2 cut(s)	190, 512
ApoI	RAATTY	2 cut(s)	591, 998
Asp700I	GAANNNNTTC	1 cut(s)	474
AspA2I	CCTAGG	1 cut(s)	1070
AspS9I	GGNCC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	55
AvrII	CCTAGG	1 cut(s)	1070
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	222, 653
BbvI	GCAGC	2 cut(s)	177, 499
BccI	CCATC	4 cut(s)	29, 535, 789, 955
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	2 cut(s)	155, 761
BcoDI	GTCTC	3 cut(s)	22, 445, 524
BfaI	CTAG	4 cut(s)	215, 261, 567, 1071
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	5 cut(s)	191, 194, 209, 212, 513
BlnI	CCTAGG	1 cut(s)	1070
BlsI	GCNGC	5 cut(s)	192, 195, 210, 213, 514
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	2 cut(s)	155, 761
Bme18I	GGWCC	1 cut(s)	55
BmeRI	GACNNNNNGTC	1 cut(s)	1025
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	155, 761
BmsI	GCATC	3 cut(s)	275, 705, 760
Bpu10I	CCTNAGC	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	793
BsaHI	GRCGYC	1 cut(s)	1021
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	4 cut(s)	231, 301, 507, 1070
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 766
BseBI	CCWGG	2 cut(s)	155, 761
BseCI	ATCGAT	1 cut(s)	793
BseDI	CCNNGG	4 cut(s)	231, 301, 507, 1070
BseGI	GGATG	2 cut(s)	672, 1042
BseLI	CCNNNNNNNGG	2 cut(s)	46, 766
BseMII	CTCAG	2 cut(s)	440, 544
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	177, 499
BshFI	GGCC	4 cut(s)	74, 440, 599, 1065
BshVI	ATCGAT	1 cut(s)	793
BsiHKAI	GWGCWC	2 cut(s)	222, 653
BsiHKCI	CYCGRG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	46, 766
BsmAI	GTCTC	3 cut(s)	22, 445, 524
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	74, 440, 599, 1065
Bso31I	GGTCTC	1 cut(s)	524
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	222, 653
Bsp143I	GATC	4 cut(s)	202, 526, 790, 798
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	4 cut(s)	111, 194, 208, 211
BspANI	GGCC	4 cut(s)	74, 440, 599, 1065
BspCNI	CTCAG	2 cut(s)	441, 543
BspDI	ATCGAT	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	1 cut(s)	806
BspQI	GCTCTTC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	524
BssECI	CCNNGG	4 cut(s)	231, 301, 507, 1070
BssMI	GATC	4 cut(s)	202, 526, 790, 798
BssNI	GRCGYC	1 cut(s)	1021
BssT1I	CCWWGG	2 cut(s)	301, 1070
Bst2UI	CCWGG	2 cut(s)	155, 761
Bst4CI	ACNGT	6 cut(s)	63, 422, 456, 549, 562, 731
Bst6I	CTCTTC	2 cut(s)	329, 371
BstACI	GRCGYC	1 cut(s)	1021
BstC8I	GCNNGC	4 cut(s)	100, 188, 317, 980
BstDEI	CTNAG	3 cut(s)	41, 449, 530
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	672, 1042
BstKTI	GATC	4 cut(s)	205, 529, 793, 801
BstMAI	GTCTC	3 cut(s)	22, 445, 524
BstMBI	GATC	4 cut(s)	202, 526, 790, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 509
BstNI	CCWGG	2 cut(s)	155, 761
BstSCI	CCNGG	2 cut(s)	153, 759
BstV1I	GCAGC	2 cut(s)	177, 499
Bsu15I	ATCGAT	1 cut(s)	793
BsuRI	GGCC	4 cut(s)	74, 440, 599, 1065
BsuTUI	ATCGAT	1 cut(s)	793
BtgI	CCRYGG	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	672, 1042
BtsI	GCAGTG	2 cut(s)	810, 927
BtsIMutI	CAGTG	5 cut(s)	575, 723, 736, 810, 927
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	4 cut(s)	100, 188, 317, 980
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	793
CseI	GACGC	1 cut(s)	1029
CsiI	ACCWGGT	1 cut(s)	759
Csp6I	GTAC	2 cut(s)	394, 414
CspCI	CAANNNNNGTGG	2 cut(s)	620, 655
CviAII	CATG	6 cut(s)	46, 302, 462, 684, 858, 961
CviQI	GTAC	2 cut(s)	394, 414
DdeI	CTNAG	3 cut(s)	41, 449, 530
DpnI	GATC	4 cut(s)	204, 528, 792, 800
DpnII	GATC	4 cut(s)	202, 526, 790, 798
DriI	GACNNNNNGTC	1 cut(s)	1025
EaeI	YGGCCR	2 cut(s)	438, 597
Eam1104I	CTCTTC	2 cut(s)	329, 371
Eam1105I	GACNNNNNGTC	1 cut(s)	1025
EarI	CTCTTC	2 cut(s)	329, 371
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	301, 1070
Eco147I	AGGCCT	2 cut(s)	74, 1065
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	524
Eco32I	GATATC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	489, 681
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	153, 759
EcoRV	GATATC	1 cut(s)	677
EcoT14I	CCWWGG	2 cut(s)	301, 1070
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	301, 1070
FaeI	CATG	6 cut(s)	49, 305, 465, 687, 861, 964
FalI	AAGNNNNNCTT	2 cut(s)	1050, 1082
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	6 cut(s)	45, 301, 461, 683, 857, 960
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	5 cut(s)	191, 194, 209, 212, 513
FokI	GGATG	2 cut(s)	679, 1049
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	191, 194, 209, 212, 513
FspBI	CTAG	4 cut(s)	215, 261, 567, 1071
GluI	GCNGC	5 cut(s)	191, 194, 209, 212, 513
HaeIII	GGCC	4 cut(s)	74, 440, 599, 1065
HgaI	GACGC	1 cut(s)	1029
Hin1I	GRCGYC	1 cut(s)	1021
Hin1II	CATG	6 cut(s)	49, 305, 465, 687, 861, 964
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	3 cut(s)	50, 227, 921
Hpy166II	GTNNAC	3 cut(s)	298, 644, 874
Hpy188I	TCNGA	6 cut(s)	55, 232, 253, 469, 666, 700
Hpy188III	TCNNGA	3 cut(s)	521, 755, 818
Hpy8I	GTNNAC	3 cut(s)	298, 644, 874
Hpy99I	CGWCG	3 cut(s)	179, 527, 1023
HpyAV	CCTTC	3 cut(s)	705, 993, 1076
HpyCH4III	ACNGT	6 cut(s)	63, 422, 456, 549, 562, 731
HpyCH4V	TGCA	6 cut(s)	246, 325, 751, 775, 910, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 509
HpyF3I	CTNAG	3 cut(s)	41, 449, 530
Hsp92I	GRCGYC	1 cut(s)	1021
Hsp92II	CATG	6 cut(s)	49, 305, 465, 687, 861, 964
Kzo9I	GATC	4 cut(s)	202, 526, 790, 798
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	861
Lsp1109I	GCAGC	2 cut(s)	177, 499
LweI	GCATC	3 cut(s)	275, 705, 760
MabI	ACCWGGT	1 cut(s)	759
MaeI	CTAG	4 cut(s)	215, 261, 567, 1071
MaeIII	GTNAC	3 cut(s)	611, 731, 898
MalI	GATC	4 cut(s)	204, 528, 792, 800
MboI	GATC	4 cut(s)	202, 526, 790, 798
MboII	GAAGA	5 cut(s)	340, 346, 388, 619, 653
MfeI	CAATTG	2 cut(s)	776, 1046
MhlI	GDGCHC	2 cut(s)	222, 653
MluCI	AATT	9 cut(s)	581, 591, 605, 637, 690, 776, 904, 998, 1046
MlyI	GAGTC	2 cut(s)	44, 221
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	172, 226, 232, 517, 694, 1027
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	783, 1041
MspA1I	CMGCKG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	155, 761
MunI	CAATTG	2 cut(s)	776, 1046
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	2 cut(s)	155, 761
MwoI	GCNNNNNNNGC	2 cut(s)	217, 509
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	4 cut(s)	202, 526, 790, 798
NlaIII	CATG	6 cut(s)	49, 305, 465, 687, 861, 964
NlaIV	GGNNCC	1 cut(s)	57
NmeAIII	GCCGAG	2 cut(s)	488, 625
NmuCI	GTSAC	3 cut(s)	611, 731, 898
PceI	AGGCCT	2 cut(s)	74, 1065
PciSI	GCTCTTC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	4 cut(s)	59, 183, 228, 670
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	921
PkrI	GCNGC	5 cut(s)	192, 195, 210, 213, 514
PleI	GAGTC	2 cut(s)	44, 221
PpsI	GAGTC	2 cut(s)	44, 221
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	153, 759
PspGI	CCWGG	2 cut(s)	153, 759
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	395, 415
RsaNI	GTAC	2 cut(s)	394, 414
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	783, 1041
SatI	GCNGC	5 cut(s)	191, 194, 209, 212, 513
Sau3AI	GATC	4 cut(s)	202, 526, 790, 798
Sau96I	GGNCC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	2 cut(s)	44, 221
ScrFI	CCNGG	2 cut(s)	155, 761
SduI	GDGCHC	2 cut(s)	222, 653
SexAI	ACCWGGT	1 cut(s)	759
SfaNI	GCATC	3 cut(s)	275, 705, 760
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	9 cut(s)	581, 591, 605, 637, 690, 776, 904, 998, 1046
SseBI	AGGCCT	2 cut(s)	74, 1065
SsiI	CCGC	4 cut(s)	111, 194, 208, 211
SspMI	CTAG	4 cut(s)	215, 261, 567, 1071
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	2 cut(s)	74, 1065
StyD4I	CCNGG	2 cut(s)	153, 759
StyI	CCWWGG	2 cut(s)	301, 1070
TaaI	ACNGT	6 cut(s)	63, 422, 456, 549, 562, 731
TaqI	TCGA	7 cut(s)	90, 177, 522, 620, 793, 892, 1018
TasI	AATT	9 cut(s)	581, 591, 605, 637, 690, 776, 904, 998, 1046
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	3 cut(s)	196, 211, 214
TfiI	GAWTC	1 cut(s)	921
Tru1I	TTAA	2 cut(s)	783, 1041
Tru9I	TTAA	2 cut(s)	783, 1041
TscAI	CASTG	5 cut(s)	582, 730, 736, 810, 934
TseFI	GTSAC	3 cut(s)	611, 731, 898
TseI	GCWGC	2 cut(s)	190, 512
Tsp45I	GTSAC	3 cut(s)	611, 731, 898
TspDTI	ATGAA	3 cut(s)	347, 683, 969
TspRI	CASTG	5 cut(s)	582, 730, 736, 810, 934
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	2 cut(s)	591, 998
XmaJI	CCTAGG	1 cut(s)	1070
XmiI	GTMKAC	1 cut(s)	873
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	4 cut(s)	215, 261, 567, 1071
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.