FvH4_3g02882

microtubule motor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016281
Physical Location & Seq
Reverse (-)
1540876 .. 1541927
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02882.t1

Sequence Viewer

Length: 498 bp
ATGGCTAGTTCATTTGATCAGACCTGTGGCGAAGTTGAGTTCACAAGAGAACTATCCGAGGCATTGCTGCATGAGAAGTTTGATGATGATAAGAGGGACGGCAAAGAATTAGCTAAATATGTAAAGGACCTTGAGAATTGCACTATGAAATGGCATGAGAAGAAGATATCCTATCTTCTTGAAGACGAAAGGCTTCGGAGTCTACTTGATTTGGCTGAAAAAAAGTGTACGGATGCTGTTAATAGTCTTAGAAGAGAAAGGGAAGCATGGGAGACGTTGCAAATTTCTCTCCTAGGCAAGCTTGAACAATTGCAGGAGGAAAAATTGTTTGCTGAGCAGAGGGCTTCAGAATTGGAGGATGACTTTAATAAAAAGTTGGAGTACAACAGGAGTCTACAGGAGTACAATTCTGAACTCGAAATTGATTTTAGGACACTGAATGAGGCTTCCAAACGAGCAGAAATGGAGAGATCGCTAGCCAAATCCATGGGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin

Protein Analysis

166

Amino Acids

19.49

Weight (kDa)

4.86

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02882
pyrus_communis pycom10g26300
rosa_laevigata RLG00000031229
rosa_multiflora Rmu_sc0000433.1_g000005 Rmu_sc0002453.1_g000003
rosa_roxburghii Rroxscaffold_1G00071070
rosa_rugosa Rorug04G0411800
rosa_samantha Rh5AG039300 Rh5AG039800 Rh5BG038400 Rh5CG042500 Rh5DG038000 Rh5DG038100
rosa_wichuraiana Rw5G003550 Rw5G003760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 202, 394
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 3 cut(s) 229, 383, 404
AgsI TTSAA 2 cut(s) 182, 305
AluBI AGCT 2 cut(s) 113, 301
AluI AGCT 2 cut(s) 113, 301
Alw26I GTCTC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 192
AspA2I CCTAGG 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 475
AvaII GGWCC 1 cut(s) 127
AvrII CCTAGG 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 115
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 3 cut(s) 6, 293, 476
BfmI CTRYAG 1 cut(s) 395
BisI GCNGC 1 cut(s) 68
BlnI CCTAGG 1 cut(s) 292
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 57, 292, 486
Bse3DI GCAATG 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 57, 292, 486
BseGI GGATG 2 cut(s) 238, 364
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 266
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 16, 470, 492
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 486
BspCNI CTCAG 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 57, 292, 486
BssMI GATC 3 cut(s) 16, 470, 492
BssT1I CCWWGG 2 cut(s) 292, 486
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 299, 477
BstDEI CTNAG 2 cut(s) 248, 333
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 238, 364
BstKTI GATC 3 cut(s) 19, 473, 495
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 16, 470, 492
BstSFI CTRYAG 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 492
BstXI CCANNNNNNTGG 1 cut(s) 487
BstYI RGATCY 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 2 cut(s) 238, 364
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 299, 477
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 3 cut(s) 228, 382, 403
CviAII CATG 4 cut(s) 71, 155, 267, 487
CviJI RGCY 8 cut(s) 5, 113, 193, 215, 301, 344, 446, 479
CviKI_1 RGCY 8 cut(s) 5, 113, 193, 215, 301, 344, 446, 479
CviQI GTAC 3 cut(s) 228, 382, 403
DdeI CTNAG 2 cut(s) 248, 333
DpnI GATC 3 cut(s) 18, 472, 494
DpnII GATC 3 cut(s) 16, 470, 492
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 292, 486
Eco32I GATATC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 127
EcoRV GATATC 1 cut(s) 168
EcoT14I CCWWGG 2 cut(s) 292, 486
ErhI CCWWGG 2 cut(s) 292, 486
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 4 cut(s) 74, 158, 270, 490
FaiI YATR 6 cut(s) 72, 120, 146, 156, 268, 488
FaqI GGGAC 1 cut(s) 110
FatI CATG 4 cut(s) 70, 154, 266, 486
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 2 cut(s) 202, 394
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 2 cut(s) 245, 371
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 3 cut(s) 6, 293, 476
GluI GCNGC 1 cut(s) 68
Hin1II CATG 4 cut(s) 74, 158, 270, 490
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 2 cut(s) 199, 391
Hpy166II GTNNAC 4 cut(s) 42, 203, 228, 395
Hpy188I TCNGA 6 cut(s) 21, 58, 198, 349, 412, 497
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 4 cut(s) 42, 203, 228, 395
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 70, 141, 280, 313
HpyF3I CTNAG 2 cut(s) 248, 333
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 4 cut(s) 74, 158, 270, 490
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 3 cut(s) 16, 470, 492
LpnPI CCDG 4 cut(s) 37, 299, 373, 383
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 223
MaeI CTAG 3 cut(s) 6, 293, 476
MaeII ACGT 1 cut(s) 275
MalI GATC 3 cut(s) 18, 472, 494
MboI GATC 3 cut(s) 16, 470, 492
MboII GAAGA 5 cut(s) 167, 172, 175, 194, 264
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 1 cut(s) 492
MluCI AATT 8 cut(s) 107, 136, 282, 308, 323, 350, 406, 420
MlyI GAGTC 2 cut(s) 208, 400
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 6 cut(s) 52, 87, 310, 333, 349, 436
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 2 cut(s) 240, 366
MunI CAATTG 1 cut(s) 308
NcoI CCATGG 1 cut(s) 486
NdeII GATC 3 cut(s) 16, 470, 492
NheI GCTAGC 1 cut(s) 475
NlaIII CATG 4 cut(s) 74, 158, 270, 490
PdmI GAANNNNTTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 2 cut(s) 207, 399
PpsI GAGTC 2 cut(s) 207, 399
PpuMI RGGWCCY 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 127
PspPI GGNCC 1 cut(s) 127
PspPPI RGGWCCY 1 cut(s) 127
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 3 cut(s) 229, 383, 404
RsaNI GTAC 3 cut(s) 228, 382, 403
SaqAI TTAA 2 cut(s) 240, 366
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 3 cut(s) 16, 470, 492
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 2 cut(s) 208, 400
SetI ASST 5 cut(s) 26, 115, 132, 278, 303
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 395
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 8 cut(s) 107, 136, 282, 308, 323, 350, 406, 420
SspMI CTAG 3 cut(s) 6, 293, 476
StyI CCWWGG 2 cut(s) 292, 486
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 417
TasI AATT 8 cut(s) 107, 136, 282, 308, 323, 350, 406, 420
TatI WGTACW 2 cut(s) 381, 402
Tru1I TTAA 2 cut(s) 240, 366
Tru9I TTAA 2 cut(s) 240, 366
TscAI CASTG 1 cut(s) 441
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 282
XmaJI CCTAGG 1 cut(s) 292
XmiI GTMKAC 2 cut(s) 202, 394
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 3 cut(s) 6, 293, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.