Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016281

Physical Location & Seq

Genomic Coordinates Reverse (-)

2815853 .. 2817696

Gene Structure 1844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG038400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTCACTAGACCAGACCCATGGTGATGTTGACTTCACAAAAGAACTAGTCCGGGCATTGCAGAATGAGAAGCTTGGTGATGAGGGGAACGGCAAAGAACTAACTGAGCATATTAACGACCTTAAGGATTGCATGATGAAATGGTATGAGAAGAGTGAGAAAGCCCATCTTCTTGAGGAGAAAAGACTTCAGACTTTAATTGATTCGGCTGAAAAGAAGTGCACTGATATTCAGGGGCAGAGGAAAAAGAAGGTAGATGAGCTCAATGCCATGCATTCCAACTTGAGACAAAGTATAGCTGCTTTAGAAGAGGAATTTGCAAAAAAAAGATCAGAGAAGATGGATGCAATTATTAGTCTTGGAAGAGAAAGGGAAGCAAGGGAGGCTGCTGAGACGTTGCAAACTTCTCTCCTACGGATGCTTCAACAACTGGAGGAAGAGAAATTAGTTGCTGAGCAGAGGGTTTCAGAACTGGAGGATGAATTTAATCGTAAGTTGGAGTACAGCAGGACTCTACAAGAGTACAATGCCAAACTTGAAATTGATATTAGTACAATGAATGAGGCTCGCAAACGAGCGGATATGGAGAGATTGAGTAGCCAAATTCAAGGGAAACTGAATATCGTTCAGAAGCTGATGAAATTAATTAAAGGGGACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

221

Amino Acids

25.64

Weight (kDa)

5.5

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016281)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02882
pyrus_communis	pycom10g26300
rosa_laevigata	RLG00000031229
rosa_multiflora	Rmu_sc0000433.1_g000005 Rmu_sc0002453.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071070
rosa_rugosa	Rorug04G0411800
rosa_samantha	Rh5AG039300 Rh5AG039800 Rh5BG038400 Rh5CG042500 Rh5DG038000 Rh5DG038100
rosa_wichuraiana	Rw5G003550 Rw5G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	581
AciI	CCGC	1 cut(s)	581
AcsI	RAATTY	3 cut(s)	317, 485, 606
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	3 cut(s)	506, 527, 556
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	428, 542, 611
AhlI	ACTAGT	1 cut(s)	49
AluBI	AGCT	4 cut(s)	76, 265, 302, 637
AluI	AGCT	4 cut(s)	76, 265, 302, 637
Alw21I	GWGCWC	2 cut(s)	227, 267
Alw26I	GTCTC	2 cut(s)	283, 389
Alw44I	GTGCAC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	637
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	302, 389
ApoI	RAATTY	3 cut(s)	317, 485, 606
AseI	ATTAAT	1 cut(s)	647
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	38, 92
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	227, 267
BbvI	GCAGC	2 cut(s)	289, 376
BccI	CCATC	2 cut(s)	177, 337
BceAI	ACGGC	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	283, 389
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	2 cut(s)	11, 50
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	303, 390
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	2 cut(s)	304, 391
Bme1390I	CCNGG	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	337, 411
BpmI	CTGGAG	2 cut(s)	455, 497
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	197, 307
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	438, 480
Bse3DI	GCAATG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	3 cut(s)	352, 426, 487
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	99, 384, 447
BseNI	ACTGG	2 cut(s)	438, 480
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	289, 376
BsiHKAI	GWGCWC	2 cut(s)	227, 267
BsiSI	CCGG	1 cut(s)	55
BsmAI	GTCTC	2 cut(s)	283, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	227, 267
Bsp143I	GATC	1 cut(s)	332
Bsp1720I	GCTNAGC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	581
BspCNI	CTCAG	3 cut(s)	100, 385, 448
BspTI	CTTAAG	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	438, 480
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	22
Bst6I	CTCTTC	4 cut(s)	149, 306, 361, 435
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	3 cut(s)	108, 393, 456
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	3 cut(s)	352, 426, 487
BstKTI	GATC	1 cut(s)	335
BstMAI	GTCTC	2 cut(s)	283, 389
BstMBI	GATC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	289, 376
BstXI	CCANNNNNNTGG	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	352, 426, 487
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	571
CaiI	CAGNNNCTG	1 cut(s)	637
Csp6I	GTAC	3 cut(s)	505, 526, 555
CviAII	CATG	3 cut(s)	23, 136, 274
CviQI	GTAC	3 cut(s)	505, 526, 555
DdeI	CTNAG	3 cut(s)	108, 393, 456
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
Eam1104I	CTCTTC	4 cut(s)	149, 306, 361, 435
EarI	CTCTTC	4 cut(s)	149, 306, 361, 435
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	3 cut(s)	26, 139, 277
FaiI	YATR	7 cut(s)	24, 114, 137, 150, 275, 299, 587
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	3 cut(s)	22, 135, 273
Fnu4HI	GCNGC	2 cut(s)	303, 390
FokI	GGATG	3 cut(s)	359, 433, 494
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	303, 390
FspBI	CTAG	2 cut(s)	11, 50
GluI	GCNGC	2 cut(s)	303, 390
GsuI	CTGGAG	2 cut(s)	455, 497
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	3 cut(s)	26, 139, 277
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	206, 514
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	38, 92
Hpy166II	GTNNAC	2 cut(s)	34, 225
Hpy188I	TCNGA	4 cut(s)	195, 337, 472, 633
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	2 cut(s)	34, 225
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	7 cut(s)	64, 135, 225, 277, 323, 350, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	3 cut(s)	108, 393, 456
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	3 cut(s)	26, 139, 277
Kzo9I	GATC	1 cut(s)	332
LpnPI	CCDG	6 cut(s)	29, 68, 221, 419, 461, 496
Lsp1109I	GCAGC	2 cut(s)	289, 376
LweI	GCATC	2 cut(s)	337, 411
MaeI	CTAG	2 cut(s)	11, 50
MaeII	ACGT	1 cut(s)	398
MalI	GATC	1 cut(s)	334
MbiI	CCGCTC	1 cut(s)	581
MboI	GATC	1 cut(s)	332
MboII	GAAGA	6 cut(s)	164, 166, 323, 352, 378, 452
MhlI	GDGCHC	2 cut(s)	227, 267
MluCI	AATT	9 cut(s)	201, 317, 351, 446, 485, 543, 606, 644, 648
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	2 cut(s)	306, 480
MnlI	CCTC	9 cut(s)	79, 172, 237, 307, 379, 430, 456, 472, 559
Mph1103I	ATGCAT	1 cut(s)	279
MseI	TTAA	6 cut(s)	117, 126, 200, 489, 647, 651
MslI	CAYNNNNRTG	1 cut(s)	27
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	3 cut(s)	26, 139, 277
NsiI	ATGCAT	1 cut(s)	279
PacI	TTAATTAA	1 cut(s)	651
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	304, 391
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PshBI	ATTAAT	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	637
RsaI	GTAC	3 cut(s)	506, 527, 556
RsaNI	GTAC	3 cut(s)	505, 526, 555
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	117, 126, 200, 489, 647, 651
SatI	GCNGC	2 cut(s)	303, 390
Sau3AI	GATC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	227, 267
SetI	ASST	7 cut(s)	78, 126, 258, 267, 304, 401, 639
SfaNI	GCATC	2 cut(s)	337, 411
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	125, 176, 286
SmoI	CTYRAG	3 cut(s)	125, 176, 286
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	9 cut(s)	201, 317, 351, 446, 485, 543, 606, 644, 648
SsiI	CCGC	1 cut(s)	581
SspMI	CTAG	2 cut(s)	11, 50
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	22
TaiI	ACGT	1 cut(s)	401
TasI	AATT	9 cut(s)	201, 317, 351, 446, 485, 543, 606, 644, 648
TatI	WGTACW	3 cut(s)	504, 525, 554
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	6 cut(s)	117, 126, 200, 489, 647, 651
Tru9I	TTAA	6 cut(s)	117, 126, 200, 489, 647, 651
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	2 cut(s)	302, 389
TspDTI	ATGAA	4 cut(s)	155, 498, 575, 656
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	223
VspI	ATTAAT	1 cut(s)	647
XapI	RAATTY	3 cut(s)	317, 485, 606
XspI	CTAG	2 cut(s)	11, 50
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.