Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000433.1

Orthogroup ID

OG0016281

Physical Location & Seq

Genomic Coordinates Forward (+)

16623 .. 17782

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000433.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggcttcactagaccagacccatggtgatgttgacttcacaaaagaactagtccgggcattgctgaatgagaagcttggtgatgagtggaacggcaaagaactagctgagcatattaacgaccttaaggattgcatgatgaaatggtatgagaagagtgagaaagcccatcttcttgaggagaaaagacttcagactttaattgattcggctgaaaagaagtgcactgatattggtaagttgactgttgatgcggagaggaaaaagaagatagaagagctcaatgccatgcattccaacttgagacgaagtatagctgctttagaagaggaatttgcaaaggaagaatcagagaagatggtaagagtagcattatattctaattgttctattgaagtgtctcttccttttatttttgccctcaaattatttcctttcgacttggaggatgcaattattagtcttagaagagaaagggaagcgagggaggctgctgagacgttgcaaacttctctcctactgatgcttcaacaactggaggaagagaaattagctgccgagcagagggtttcagaacttgaggatgaatttaatcgcaagttagagtacaacaggagtctggaagagtacaaaagccaactggaagctgattttagtacactgaatgaggctcgcaaactaacagaaatggagagattgagtagccaaatccaggggaaactgaatatcgttgagaagctgatgaaattaattaagggggacgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

255

Amino Acids

29.62

Weight (kDa)

4.99

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016281)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02882
pyrus_communis	pycom10g26300
rosa_laevigata	RLG00000031229
rosa_multiflora	Rmu_sc0000433.1_g000005 Rmu_sc0002453.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071070
rosa_rugosa	Rorug04G0411800
rosa_samantha	Rh5AG039300 Rh5AG039800 Rh5BG038400 Rh5CG042500 Rh5DG038000 Rh5DG038100
rosa_wichuraiana	Rw5G003550 Rw5G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	332, 587
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	3 cut(s)	608, 629, 658
AfiI	CCNNNNNNNGG	2 cut(s)	564, 712
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	395, 530
AhlI	ACTAGT	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	711
AluBI	AGCT	7 cut(s)	76, 107, 280, 317, 554, 647, 739
AluI	AGCT	7 cut(s)	76, 107, 280, 317, 554, 647, 739
Alw21I	GWGCWC	2 cut(s)	227, 282
Alw26I	GTCTC	3 cut(s)	298, 405, 491
Alw44I	GTGCAC	1 cut(s)	223
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	3 cut(s)	317, 491, 554
ApoI	RAATTY	2 cut(s)	332, 587
AseI	ATTAAT	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	38, 92
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	227, 282
BbvI	GCAGC	3 cut(s)	304, 478, 541
BccI	CCATC	2 cut(s)	177, 352
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	713
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	3 cut(s)	298, 405, 491
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	3 cut(s)	11, 50, 104
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	3 cut(s)	318, 492, 555
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	3 cut(s)	319, 493, 556
Bme1390I	CCNGG	2 cut(s)	56, 713
BmrFI	CCNGG	2 cut(s)	56, 713
BmsI	GCATC	3 cut(s)	241, 439, 513
BpmI	CTGGAG	1 cut(s)	557
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	3 cut(s)	197, 322, 599
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	22, 712
Bsc4I	CCNNNNNNNGG	2 cut(s)	564, 712
Bse1I	ACTGG	2 cut(s)	540, 645
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	713
BseDI	CCNNGG	2 cut(s)	22, 712
BseGI	GGATG	2 cut(s)	454, 589
BseLI	CCNNNNNNNGG	2 cut(s)	564, 712
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	99, 486
BseNI	ACTGG	2 cut(s)	540, 645
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	3 cut(s)	304, 478, 541
BsiHKAI	GWGCWC	2 cut(s)	227, 282
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	564, 712
BsmAI	GTCTC	3 cut(s)	298, 405, 491
BsmBI	CGTCTC	2 cut(s)	298, 491
BsmI	GAATGC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	227, 282
Bsp1720I	GCTNAGC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	2 cut(s)	100, 487
BspQI	GCTCTTC	1 cut(s)	270
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	540, 645
BssECI	CCNNGG	2 cut(s)	22, 712
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	7 cut(s)	149, 270, 321, 408, 463, 537, 618
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	3 cut(s)	108, 464, 495
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	454, 589
BstMAI	GTCTC	3 cut(s)	298, 405, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	54, 711
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	304, 478, 541
BstXI	CCANNNNNNTGG	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	454, 589
BtsIMutI	CAGTG	2 cut(s)	225, 659
Cac8I	GCNNGC	1 cut(s)	673
Csp6I	GTAC	3 cut(s)	607, 628, 657
CviAII	CATG	3 cut(s)	23, 136, 289
CviQI	GTAC	3 cut(s)	607, 628, 657
DdeI	CTNAG	3 cut(s)	108, 464, 495
Eam1104I	CTCTTC	7 cut(s)	149, 270, 321, 408, 463, 537, 618
EarI	CTCTTC	7 cut(s)	149, 270, 321, 408, 463, 537, 618
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	711
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	2 cut(s)	298, 491
FaeI	CATG	3 cut(s)	26, 139, 292
FaiI	YATR	7 cut(s)	24, 114, 137, 150, 290, 314, 376
FalI	AAGNNNNNCTT	4 cut(s)	156, 188, 387, 419
FatI	CATG	3 cut(s)	22, 135, 288
Fnu4HI	GCNGC	3 cut(s)	318, 492, 555
FokI	GGATG	2 cut(s)	461, 596
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	318, 492, 555
FspBI	CTAG	3 cut(s)	11, 50, 104
GluI	GCNGC	3 cut(s)	318, 492, 555
GsuI	CTGGAG	1 cut(s)	557
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	3 cut(s)	26, 139, 292
HincII	GTYRAC	2 cut(s)	34, 243
HindII	GTYRAC	2 cut(s)	34, 243
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	3 cut(s)	206, 347, 616
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	38, 92
Hpy166II	GTNNAC	4 cut(s)	34, 225, 243, 659
Hpy188I	TCNGA	3 cut(s)	195, 352, 574
Hpy188III	TCNNGA	2 cut(s)	176, 620
Hpy8I	GTNNAC	4 cut(s)	34, 225, 243, 659
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	6 cut(s)	135, 225, 292, 338, 452, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	3 cut(s)	108, 464, 495
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	3 cut(s)	26, 139, 292
LguI	GCTCTTC	1 cut(s)	270
LpnPI	CCDG	8 cut(s)	29, 68, 521, 598, 605, 626, 698, 725
Lsp1109I	GCAGC	3 cut(s)	304, 478, 541
LweI	GCATC	3 cut(s)	241, 439, 513
MaeI	CTAG	3 cut(s)	11, 50, 104
MaeII	ACGT	1 cut(s)	500
MhlI	GDGCHC	2 cut(s)	227, 282
MluCI	AATT	9 cut(s)	201, 332, 382, 425, 453, 548, 587, 746, 750
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	321
Mph1103I	ATGCAT	1 cut(s)	294
MseI	TTAA	6 cut(s)	117, 126, 200, 591, 749, 753
MslI	CAYNNNNRTG	1 cut(s)	27
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	56, 713
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	713
MwoI	GCNNNNNNNGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	22
NlaIII	CATG	3 cut(s)	26, 139, 292
NmeAIII	GCCGAG	1 cut(s)	583
NsiI	ATGCAT	1 cut(s)	294
PacI	TTAATTAA	1 cut(s)	753
PciSI	GCTCTTC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	206, 347
PkrI	GCNGC	3 cut(s)	319, 493, 556
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
PshBI	ATTAAT	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	711
RsaI	GTAC	3 cut(s)	608, 629, 658
RsaNI	GTAC	3 cut(s)	607, 628, 657
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	6 cut(s)	117, 126, 200, 591, 749, 753
SatI	GCNGC	3 cut(s)	318, 492, 555
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	2 cut(s)	56, 713
SduI	GDGCHC	2 cut(s)	227, 282
SetI	ASST	9 cut(s)	78, 109, 126, 282, 319, 503, 556, 649, 741
SfaNI	GCATC	3 cut(s)	241, 439, 513
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	4 cut(s)	125, 176, 301, 578
SmoI	CTYRAG	4 cut(s)	125, 176, 301, 578
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	9 cut(s)	201, 332, 382, 425, 453, 548, 587, 746, 750
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	3 cut(s)	11, 50, 104
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	54, 711
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	1 cut(s)	438
TasI	AATT	9 cut(s)	201, 332, 382, 425, 453, 548, 587, 746, 750
TatI	WGTACW	3 cut(s)	606, 627, 656
TfiI	GAWTC	2 cut(s)	206, 347
Tru1I	TTAA	6 cut(s)	117, 126, 200, 591, 749, 753
Tru9I	TTAA	6 cut(s)	117, 126, 200, 591, 749, 753
TscAI	CASTG	2 cut(s)	232, 666
TseI	GCWGC	3 cut(s)	317, 491, 554
TspDTI	ATGAA	3 cut(s)	155, 600, 758
TspRI	CASTG	2 cut(s)	232, 666
Vha464I	CTTAAG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	223
VspI	ATTAAT	1 cut(s)	749
XapI	RAATTY	2 cut(s)	332, 587
XspI	CTAG	3 cut(s)	11, 50, 104
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.