Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016281

Physical Location & Seq

Genomic Coordinates Reverse (-)

2939550 .. 2941171

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG042500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTCACTAGACCAGACCCGTGGTGATGTTGACTTCACGAAAGAACTAGTCCGGGCATTGCTGAATGAGAAGTTTGGTGATGAGGGGAACGACAAAGAACTAGCTGAGCATATTAACGACCTTAAGGATTGCATGATGAAATGGTACGAGAAGAGTGAGAAACCCCATCTTCTTGAGGAGGAAAGACTTCAGACTTTAATTGATTCGGCTGAAAAGAAGTGCACTGATATTGATGCGGAGAGGAAAAAGGAGGTAGATGAGCTCAATGCCATGCATTCCAACTTGAGACAAAGTATAGCTGCTTTAGAAGAGGAATTTGCAAAGGAAGAATCAGAGAAGATGGATGCAATTATTAGTCTTAGAAAAGAAAGGGAAGCAAGGGAGGCTGCTGACGAGTTGCAAGTTTCTCTCCTAGAGATGCTTCAACAACTGGAGGAAGAGAAATTAGTTGCTGAGCAGAAGGCTTCAGAATTGGAGGATGAAATTAATCGAAAGTTGGAGTACAGCAGAAGTCTACAAGAGTACAATTCCAAACTCGAAATTGATATTAGTACAATGAATGAGGCTCGCAAACGAGCAGATATGGAGAGATTGAGTAGCCAAATCCAGGGGAAACTGAATATCATTGAGAAGCTGATGAAATTAATTAAAGGGGACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

221

Amino Acids

25.69

Weight (kDa)

4.73

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016281)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02882
pyrus_communis	pycom10g26300
rosa_laevigata	RLG00000031229
rosa_multiflora	Rmu_sc0000433.1_g000005 Rmu_sc0002453.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071070
rosa_rugosa	Rorug04G0411800
rosa_samantha	Rh5AG039300 Rh5AG039800 Rh5BG038400 Rh5CG042500 Rh5DG038000 Rh5DG038100
rosa_wichuraiana	Rw5G003550 Rw5G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	517
AciI	CCGC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	2 cut(s)	176, 453
AfaI	GTAC	4 cut(s)	149, 506, 527, 556
AfiI	CCNNNNNNNGG	1 cut(s)	610
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	428
AhlI	ACTAGT	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	4 cut(s)	107, 265, 302, 637
AluI	AGCT	4 cut(s)	107, 265, 302, 637
Alw21I	GWGCWC	2 cut(s)	227, 267
Alw26I	GTCTC	1 cut(s)	283
Alw44I	GTGCAC	1 cut(s)	223
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	302, 389
ApoI	RAATTY	1 cut(s)	317
AseI	ATTAAT	2 cut(s)	489, 647
Asp700I	GAANNNNTTC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	38, 92
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	227, 267
BbvI	GCAGC	2 cut(s)	289, 376
BccI	CCATC	2 cut(s)	177, 337
BciT130I	CCWGG	1 cut(s)	611
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	4 cut(s)	11, 50, 104, 416
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	303, 390
BlpI	GCTNAGC	2 cut(s)	108, 456
BlsI	GCNGC	2 cut(s)	304, 391
Bme1390I	CCNGG	2 cut(s)	56, 611
BmrFI	CCNGG	2 cut(s)	56, 611
BmsI	GCATC	3 cut(s)	226, 337, 411
BpmI	CTGGAG	1 cut(s)	455
Bpu1102I	GCTNAGC	2 cut(s)	108, 456
BpuEI	CTTGAG	2 cut(s)	197, 307
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	22, 610
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
Bse1I	ACTGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	22, 610
BseGI	GGATG	2 cut(s)	352, 487
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	99, 447
BseNI	ACTGG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	289, 376
BsiHKAI	GWGCWC	2 cut(s)	227, 267
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	610
BsmAI	GTCTC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	227, 267
Bsp1720I	GCTNAGC	2 cut(s)	108, 456
BspACI	CCGC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	100, 448
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	22, 610
Bst2UI	CCWGG	1 cut(s)	611
Bst6I	CTCTTC	3 cut(s)	149, 306, 435
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	3 cut(s)	108, 362, 456
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	352, 487
BstMAI	GTCTC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	54, 609
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	289, 376
BstXI	CCANNNNNNTGG	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	352, 487
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	571
Csp6I	GTAC	4 cut(s)	148, 505, 526, 555
CviAII	CATG	2 cut(s)	136, 274
CviQI	GTAC	4 cut(s)	148, 505, 526, 555
DdeI	CTNAG	3 cut(s)	108, 362, 456
Eam1104I	CTCTTC	3 cut(s)	149, 306, 435
EarI	CTCTTC	3 cut(s)	149, 306, 435
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	176, 453
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	2 cut(s)	139, 277
FaiI	YATR	5 cut(s)	114, 137, 275, 299, 587
FatI	CATG	2 cut(s)	135, 273
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	303, 390
FokI	GGATG	2 cut(s)	359, 494
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	303, 390
FspBI	CTAG	4 cut(s)	11, 50, 104, 416
GluI	GCNGC	2 cut(s)	303, 390
GsuI	CTGGAG	1 cut(s)	455
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	2 cut(s)	139, 277
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	206, 332
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	38, 92
Hpy166II	GTNNAC	3 cut(s)	34, 225, 518
Hpy188I	TCNGA	3 cut(s)	195, 337, 472
Hpy188III	TCNNGA	2 cut(s)	40, 176
Hpy8I	GTNNAC	3 cut(s)	34, 225, 518
HpyAV	CCTTC	1 cut(s)	457
HpyCH4V	TGCA	6 cut(s)	135, 225, 277, 323, 350, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	3 cut(s)	108, 362, 456
Hsp92II	CATG	2 cut(s)	139, 277
LpnPI	CCDG	5 cut(s)	29, 68, 419, 596, 623
Lsp1109I	GCAGC	2 cut(s)	289, 376
LweI	GCATC	3 cut(s)	226, 337, 411
MaeI	CTAG	4 cut(s)	11, 50, 104, 416
MboII	GAAGA	6 cut(s)	164, 166, 323, 341, 352, 452
MhlI	GDGCHC	2 cut(s)	227, 267
MmeI	TCCRAC	2 cut(s)	306, 480
Mph1103I	ATGCAT	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	6 cut(s)	117, 126, 200, 489, 647, 651
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	56, 611
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	56
NlaIII	CATG	2 cut(s)	139, 277
NsiI	ATGCAT	1 cut(s)	279
PacI	TTAATTAA	1 cut(s)	651
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	206, 332
PkrI	GCNGC	2 cut(s)	304, 391
PshBI	ATTAAT	2 cut(s)	489, 647
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
RsaI	GTAC	4 cut(s)	149, 506, 527, 556
RsaNI	GTAC	4 cut(s)	148, 505, 526, 555
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	117, 126, 200, 489, 647, 651
SatI	GCNGC	2 cut(s)	303, 390
ScrFI	CCNGG	2 cut(s)	56, 611
SduI	GDGCHC	2 cut(s)	227, 267
SetI	ASST	6 cut(s)	109, 126, 258, 267, 304, 639
SfaNI	GCATC	3 cut(s)	226, 337, 411
SmlI	CTYRAG	3 cut(s)	125, 176, 286
SmoI	CTYRAG	3 cut(s)	125, 176, 286
SpeI	ACTAGT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	4 cut(s)	11, 50, 104, 416
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	54, 609
TaqI	TCGA	2 cut(s)	493, 540
TatI	WGTACW	3 cut(s)	504, 525, 554
TfiI	GAWTC	2 cut(s)	206, 332
Tru1I	TTAA	6 cut(s)	117, 126, 200, 489, 647, 651
Tru9I	TTAA	6 cut(s)	117, 126, 200, 489, 647, 651
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	2 cut(s)	302, 389
TspDTI	ATGAA	4 cut(s)	155, 498, 575, 656
TspRI	CASTG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	223
VspI	ATTAAT	2 cut(s)	489, 647
XapI	RAATTY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	4 cut(s)	11, 50, 104, 416
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.