Rroxscaffold_1G00071070

microtubule motor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016281
Physical Location & Seq
Forward (+)
92003819 .. 92005010
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071070.1

Sequence Viewer

Length: 669 bp
ATGGCTAATTCACTTGATCAGACCTGTGGCAATGTTGAGTTCACAAAAGAGCTAGCCGAGGCATTGCTTTATGAGAAGTTTGATGATGATAAGAGGAACGGCAAAGAATTAGCTGAATATGTTAAGGACCTTAAGGATTGCACAATGAAATGGCACGAGAAGAAGAAATCCTATCTTCTTGAGGAAGACAGGCTTCGGATTTTACTTGATTTGGCTGAAAAAAAGTGTATTCATGCTGATGCGGAGAGGAAAAAAAAGGTAGCTGAGCTCAATGCCATGCATTCCAACTTGAGACAAAGTATAGCTGCTTTAGAAGAAGAAATTGCAAAGGAAGAATCAGAGAAGACGGATGCAATTATTAGTCTTGGAAGAGAAAGGGAAGCAAGGGAGGCTGCTGAGACGTTGCAAACTTCTCTCCTACGGATGCTTCAACTACTGGAGGAAGAGAAATTAGTTGCTGAGCAGAGGGTTTCAGAACTGGAGGATGAATTTAATCGTAAGTTGGATTACAGCAGGAGTCTACAAGAGTACAATGACAAACTTGAAATTGATATTAGTACAATGAATGAGGCTCGCAAACGAGCGGATATGGAGAGATTGAGTAGCCAAATTCAAGGGAAACTGAATATCGTTCAGAAACTGATGAAATTAATTAAAGGGGACGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin

Protein Analysis

222

Amino Acids

25.82

Weight (kDa)

5.17

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016281)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02882
pyrus_communis pycom10g26300
rosa_laevigata RLG00000031229
rosa_multiflora Rmu_sc0000433.1_g000005 Rmu_sc0002453.1_g000003
rosa_roxburghii Rroxscaffold_1G00071070
rosa_rugosa Rorug04G0411800
rosa_samantha Rh5AG039300 Rh5AG039800 Rh5BG038400 Rh5CG042500 Rh5DG038000 Rh5DG038100
rosa_wichuraiana Rw5G003550 Rw5G003760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 584
AccI GTMKAC 1 cut(s) 520
AciI CCGC 2 cut(s) 242, 584
AcsI RAATTY 2 cut(s) 488, 609
AfaI GTAC 2 cut(s) 530, 559
AflII CTTAAG 1 cut(s) 131
AgsI TTSAA 3 cut(s) 431, 545, 614
AluBI AGCT 5 cut(s) 52, 113, 263, 268, 305
AluI AGCT 5 cut(s) 52, 113, 263, 268, 305
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 286, 392
AlwNI CAGNNNCTG 1 cut(s) 640
ApeKI GCWGC 2 cut(s) 305, 392
ApoI RAATTY 2 cut(s) 488, 609
AseI ATTAAT 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 270
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 2 cut(s) 192, 350
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 292, 379
BceAI ACGGC 1 cut(s) 115
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 286, 392
BfaI CTAG 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 306, 393
BlpI GCTNAGC 2 cut(s) 264, 459
BlsI GCNGC 2 cut(s) 307, 394
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmsI GCATC 3 cut(s) 229, 340, 414
BmtI GCTAGC 1 cut(s) 56
BpiI GAAGAC 2 cut(s) 192, 350
BpmI CTGGAG 2 cut(s) 458, 500
Bpu1102I GCTNAGC 2 cut(s) 264, 459
BpuEI CTTGAG 2 cut(s) 200, 310
BsaJI CCNNGG 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 441, 483
Bse3DI GCAATG 2 cut(s) 37, 62
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 3 cut(s) 355, 429, 490
BseMI GCAATG 2 cut(s) 37, 62
BseMII CTCAG 3 cut(s) 255, 387, 450
BseNI ACTGG 2 cut(s) 441, 483
BseXI GCAGC 2 cut(s) 292, 379
BsiHKAI GWGCWC 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 286, 392
BsmBI CGTCTC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 16
Bsp1720I GCTNAGC 2 cut(s) 264, 459
BspACI CCGC 2 cut(s) 242, 584
BspCNI CTCAG 3 cut(s) 256, 388, 451
BspOI GCTAGC 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 37, 62
BsrI ACTGG 2 cut(s) 441, 483
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 16
BssSI CACGAG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 155
Bst6I CTCTTC 2 cut(s) 364, 438
BstAFI CTTAAG 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 54, 574
BstDEI CTNAG 3 cut(s) 264, 396, 459
BstF5I GGATG 3 cut(s) 355, 429, 490
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 2 cut(s) 286, 392
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstV1I GCAGC 2 cut(s) 292, 379
BstV2I GAAGAC 2 cut(s) 192, 350
BtsCI GGATG 3 cut(s) 355, 429, 490
Cac8I GCNNGC 2 cut(s) 54, 574
CaiI CAGNNNCTG 1 cut(s) 640
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 529, 558
CviAII CATG 2 cut(s) 233, 277
CviQI GTAC 2 cut(s) 529, 558
DdeI CTNAG 3 cut(s) 264, 396, 459
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 364, 438
EarI CTCTTC 2 cut(s) 364, 438
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 2 cut(s) 236, 280
FaiI YATR 6 cut(s) 72, 120, 234, 278, 302, 590
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 2 cut(s) 232, 276
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 2 cut(s) 306, 393
FokI GGATG 3 cut(s) 362, 436, 497
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 306, 393
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 306, 393
GsuI CTGGAG 2 cut(s) 458, 500
Hin1II CATG 2 cut(s) 236, 280
HinfI GANTC 2 cut(s) 335, 517
Hpy166II GTNNAC 2 cut(s) 42, 521
Hpy188I TCNGA 5 cut(s) 21, 198, 340, 475, 636
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 2 cut(s) 42, 521
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 5 cut(s) 141, 280, 326, 353, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 3 cut(s) 264, 396, 459
HpySE526I ACGT 1 cut(s) 401
Hsp92II CATG 2 cut(s) 236, 280
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 5 cut(s) 37, 175, 422, 464, 499
Lsp1109I GCAGC 2 cut(s) 292, 379
LweI GCATC 3 cut(s) 229, 340, 414
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 401
MalI GATC 1 cut(s) 18
MbiI CCGCTC 1 cut(s) 584
MboI GATC 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 270
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 2 cut(s) 309, 483
MnlI CCTC 9 cut(s) 52, 87, 175, 240, 382, 433, 459, 475, 562
Mph1103I ATGCAT 1 cut(s) 282
MseI TTAA 5 cut(s) 123, 132, 492, 650, 654
MslI CAYNNNNRTG 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 1 cut(s) 16
NheI GCTAGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 236, 280
NmeAIII GCCGAG 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 282
PacI TTAATTAA 1 cut(s) 654
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 2 cut(s) 307, 394
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PpuMI RGGWCCY 1 cut(s) 127
PshBI ATTAAT 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 127
PspPI GGNCC 1 cut(s) 127
PspPPI RGGWCCY 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 640
RsaI GTAC 2 cut(s) 530, 559
RsaNI GTAC 2 cut(s) 529, 558
RseI CAYNNNNRTG 1 cut(s) 237
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 5 cut(s) 123, 132, 492, 650, 654
SatI GCNGC 2 cut(s) 306, 393
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 526
SduI GDGCHC 1 cut(s) 270
SetI ASST 9 cut(s) 26, 54, 115, 132, 261, 265, 270, 307, 404
SfaNI GCATC 3 cut(s) 229, 340, 414
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 3 cut(s) 131, 179, 289
SmoI CTYRAG 3 cut(s) 131, 179, 289
SsiI CCGC 2 cut(s) 242, 584
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 270
TaiI ACGT 1 cut(s) 404
TatI WGTACW 2 cut(s) 528, 557
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 5 cut(s) 123, 132, 492, 650, 654
Tru9I TTAA 5 cut(s) 123, 132, 492, 650, 654
TseI GCWGC 2 cut(s) 305, 392
TspDTI ATGAA 5 cut(s) 161, 221, 501, 578, 659
TspGWI ACGGA 2 cut(s) 362, 436
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 127
VspI ATTAAT 1 cut(s) 650
XapI RAATTY 2 cut(s) 488, 609
XmiI GTMKAC 1 cut(s) 520
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.